Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,836,957	Δ8,771 bp		[setC]–[adeD]	[setC], yicL, yicU, nlpA, yicS, nepI, yicN, adeQ, [adeD]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3836957	3845727	8771	24 [0]	[0] 24	[setC]–[adeD]	[setC],yicL,yicU,nlpA,yicS,nepI,yicN,adeQ,[adeD]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3836956	0 (0.000)	24 (0.390)	24/492	0.9	100%	coding (4/1185 nt)	setC	putative arabinose exporter
	?	NC_000913	3845728 =	0 (0.000)					coding (1765/1767 nt)	adeD	adenine deaminase

GTAACGGCCAGGTACAAAGTCATCTGCCGTTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCTTTCTCTGCCAGTGATCCCCGCGCTAAAACTAACCAGTCAGGGGCTATTTGATGGCGAGAAGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCC  >  NC_000913/3845480‑3845947                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                            caaatcaacttgttttatttttactatcaaaaatagctcattgccttactataattaatatataaattcggtaattaattcttaacatgcttttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggaacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcta                                                                                                                                                                                                                            >  1:306832‑M2/249‑250 (MQ=255)  aaatcaacttgttttatttttactatcaaaaatagctcattgccttactataattaatatataaattcggtaattaattcttaacatgcttttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgctaat                                                                                                                                                                                                                          <  1:195915‑M2/4‑1 (MQ=255)    atcaacttgttttatttttactaacaaaaatagctcattgccttactataattaatatataaattcggtaattaattcttaacatgcttttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgctaataa                                                                                                                                                                                                                        <  1:112170‑M2/6‑1 (MQ=255)           tgttttatttttactatcaaaaatagctcattgccttactataattaatatataaattcggtaattaattcttaacatgcttttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGc                                                                                                                                                                                                                 >  2:113375‑M2/239‑251 (MQ=255)             ttttatttttactatcaaaaatagctcattgccttactataattaatatataaattaggtaattaattcttaacatgcttttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGccc                                                                                                                                                                                                               >  2:453796‑M2/237‑251 (MQ=255)                                aatagctcattgccttactataattaatatataaattcggtaattaattcttaacatgcttttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCaaa                                                                                                                                                                                             >  1:429051‑M2/218‑250 (MQ=255)                                     ctcattgccttactataattaatatataaattcggtaattaattcttaacatgcttttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCAc                                                                                                                                                                                       >  1:149683‑M2/213‑251 (MQ=255)                                             cttactataattaatatataaattcggtaattaattcttaacatgcttttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatataatactcattcgactggtacttatttgaaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGATTCATGCCGGGCAAAAGTCACCAGTTACg                                                                                                                                                                               >  2:483870‑M2/205‑251 (MQ=255)                                              ttactataattaatatataaattcggtaattaattcttaacatgcttttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGNCGTCATGCCGGGCAAACGTCACCCGTTACGt                                                                                                                                                                              >  2:217836‑M2/204‑251 (MQ=255)                                                actataattaatatataaattcggtaattaattcttaacatgcttttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGttt                                                                                                                                                                            >  1:149378‑M2/202‑251 (MQ=255)                                                     aattaatatataaattcggtaattaattcttaacatgcttttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaaatcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGcc                                                                                                                                                                       >  2:460902‑M2/197‑251 (MQ=255)                                                         aatatataaattcggtaattaattcttaacatgcttttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTg                                                                                                                                                                   >  1:375575‑M2/193‑251 (MQ=255)                                                                                   taacatgattttactaataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatctgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGCCAACTGCTGCATTTTTTTCTCccgg                                                                                                                                         >  2:67547‑M2/167‑251 (MQ=255)                                                                                                   ataatctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGGCGGATTTTGCGttctt                                                                                                                         <  1:65791‑M2/101‑1 (MQ=255)                                                                                                        ctcaattgctggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACt                                                                                                                                                                    >  2:453945‑M2/146‑203 (MQ=255)                                                                                                        ctcaattgctggccctataatattgcgctagcattgcttgctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGGCACCAGTTACGTTTATGCCACt                                                                                                                                                                    <  1:453945‑M2/58‑1 (MQ=255)                                                                                                                 tggccctataatattgcgctagcatcgttttttggttgtataagcgatactcaaaaattcttaatacaatactcattcgactggtacatatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTCATAAAAAAAGCCCGGCGTCATGACGGGCAAAAGTCACCAGTTACGTTTATGCAACTGTCAAATGCTGAATTTTTTTCCCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACt                                                                                                           >  2:304241‑M2/137‑251 (MQ=255)                                                                                                                  ggccctataatattgcgctagcattgctttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttctttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCActt                                                                                                          >  1:93016‑M2/136‑250 (MQ=255)                                                                                                                         taatattgcgctagcattgctttctggttgtatcagcgctactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCTTCATGCCGGGCAAACGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGGCGGATTTTTCGTTCTTCCATTACCGCCACTATCGCCAt                                                                                                   >  2:143543‑M2/129‑251 (MQ=255)                                                                                                                                             tttctggttgtatcagcgatactcaaaaattcttaatacaatactcattcgactggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATcg                                                                               >  2:329475‑M2/109‑251 (MQ=255)                                                                                                                                                                                  acaatactcattcgcctggtacttatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGCCAACTGCTGAATTTTTTTCTCGCGGCGGCTTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATCTCCAGCGCAGCGAAGGTGCCTGcccaccc                                          >  2:92619‑M2/72‑248 (MQ=255)                                                                                                                                                                                                         tatttgtaactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTcc                   >  1:306654‑M2/49‑251 (MQ=255)                                                                                                                                                                                                                aactcagttatattttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGc            >  1:46525‑M2/42‑251 (MQ=255)                                                                                                                                                                                                                            ttttttcgcccggtgattcagaagaatgcTAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGAGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCCATCATAccc  >  1:166455‑M2/30‑249 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                            GTAACGGCCAGGTACAAAGTCATCTGCCGTTACCCATTGCCGGGCTGATGAGCACCGACACGGCGCAGTCGCTGGCGGAACAAATTGACGCCTTGAAAGCCGCCGCCCGTGAATGCGGTCCGTTACCCGATGAGCCGTTTATTCAGATGGCGTTTCTTTCTCTGCCAGTGATCCCCGCGCTAAAACTAACCAGTCAGGGGCTATTTGATGGCGAGAAGTTTGCCTTCACTACGCTGGAAGTCACGGAATAATAAAAAAAGCCCGGCGTCATGCCGGGCAAAAGTCACCAGTTACGTTTATGCCACTGTCAACTGCTGAATTTTTTTCTCGCGGCGGATTTTGCGTTCTTCCATTACCGCCACTATCGCCATCAGGCAGATACAACCAATCGCGGCGATATCCAGCGCGGCGAAGGTGCCTGCCCAGCCGGTAAGGCCGAATACCGGCGTCCCATCGGCAATCATTCCC  >  NC_000913/3845480‑3845947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.