| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 641,446 | Δ17,325 bp | [uspG]–crcB | 18 genes [uspG], ybdR, yldA, rnk, rna, citT, citG, citX, citF, citE, citD, citC, dpiB, dpiA, dcuC, pagP, cspE, crcB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 641446 | 658770 | 17325 | 36 [0] | [0] 38 | [uspG]–crcB | [uspG],ybdR,yldA,rnk,rna,citT,citG,citX,citF,citE,citD,citC,dpiB,dpiA,dcuC,pagP,cspE,crcB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 641445 | 0 (0.000) | 36 (0.590) | 30/492 | 0.5 | 100% | coding (423/429 nt) | uspG | universal stress protein G |
| ? | NC_000913 | 658771 = | 0 (0.000) | intergenic (‑833/‑176) | crcB/tatE | F(‑) channel protein/twin arginine protein translocation system ‑ TatE protein | |||||
TACTTCCTGCCGCCTGGGTTCGCGGGCCGCTCAAAGAGCATCACTGGTCAACGTTGCTTGCCGCTCGTGCGCTGGATACCACCTGTTATATGGTGGCGGCGGGGGAGTGCGGGAACAAAAATATCGGTCAAAGCCGGATTATAGATCCCTTTGGCGTCACCATTGCGGCAGCGTCAGAAATGCCTGCACTCATTATGGCGGAAGTGACGCCCGAACGTGTGCGTCAGGTGCGCGCGCAACTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAATATTCTCTGGTTTTTAAGGCGCGTTCTGTTGCCGGTTATATGTCAAGAAGGTATCTATGGGTGAGATTAGTATTACCAAACTGCTGGTAGTTGCGGCGCTGGTCGTTCTGCTGTTTGGGACTAAGAA > NC_000913/658532‑659017 | ggcgggtgactgtacgacggttccgtacaagcagatcatcatcgccactggcgaaggtgccaaagcctctctgagtgcttttgcctacctgattcgcaccaaaactgcataagaagaagtaagattcacctgcaattgcttagccgccggggtcaaacctggcggcttttttatggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTa < 1:136747‑M2/12‑1 (MQ=255) gcgggggactgtacgacggttccgtacaagcagatcatcatcgccactggcgaaggtgccaaagcctctctgagtgcttttgactacctgattcgcaccaaaactgcataagaagaagtaagattcacctgcaattgcttagccgccggggtcaaaccttgcggcttttttatggcattaaaaagccccgccgggctggctccgggcaggtcgggatacttattctggcacttaacgcCTGCCCGTCTTa > 2:332664‑M2/239‑250 (MQ=255) gggtgactgtacgacggttccggacaagcagatcatcatcgccactggcgaaggtgccaaagcctctctgagtgcttttgactacctgattcgcaccaaaactgcataagaagaagtaagattcacctgcaattgcttagccgccggggtcaaacctggcggcttttttatggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAaac < 1:114561‑M2/15‑1 (MQ=255) gactgtccgacgtttccgtccaagcagatcatcaccgccactggcgatggtgccaatgcctctctgagtgcttttgactccctgtttcgcaccaaaactgcataagaagaagtaagattcacctgaaattgcttagccgccggggtcaaacctggcggcttttttatggcattaaaaagccccgccgggatggttccgggcagggcgggattcttattctggcaattaacgcCTGCCCGTCTTAAACAAcc < 1:417300‑M2/19‑1 (MQ=255) gactgtacgacggttccgtacaagcagatcatcatcgccactggcgaaggtgccaaagcctctctgagtgcttttgactacctgattcgcaccaaaactgcataagaagaagtaagattcacctgcaattgcttagccgccggggtcaaacctggcggcttttttatggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAAcc < 1:345051‑M2/19‑1 (MQ=255) gtacgacggttccgtacaagcagatcatcatcgcgactggcgaaggtgccaaagcctctctgagtgcttttgactacctgattcgcaccaaaactgcataagaagaagtaagattcacctgcaattgcttagccgccggggtcaaacctggcggcttttttatggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCg > 1:338212‑M2/229‑251 (MQ=255) gtcgtttcgttccaacaatatcctcatcgccactggcgaagttgccaaggcctctctgagtgctttggactacctgcttcacgccaaaactgcataggaagaattaaaattcccctgcaattgcttagccgccggggtcaaccctggcggcttttttatggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCttt < 2:318022‑M2/27‑1 (MQ=255) acggttccgtacaagcagatcatcatcgccactggcgaaggtgccaaagcctctctgagtgcttttgactacctgattcgcaccaaaactgcataagaagaagtaagattcacctgcaattgcttagccgccggggtcaaacctggcggcttttttatggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTg > 1:241016‑M2/224‑251 (MQ=255) cggttcatcatcgccactggcgaaggtgccaaggcctctctgagtgcttttgactacctgattcgcaccaaaacggcataagaagaagtaagatccccctgcaattgcttagccgccggggtcaaccctggcggcttttttatggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAattat < 1:240844‑M2/43‑1 (MQ=255) ctggcgaaggtgccaaagcctctctgagtgcttttgactacctgattcgcagaaaaactgcataagaagaagtaagattcacctgcaattgcttagccgccggggtcaaacctggcggcttttttatggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGATTTGCGCCGCCGGAATTATTATGATGTTTTTTTAc > 1:407673‑M2/193‑251 (MQ=255) gaaggtgccaaagcctctctgagtgcttttgactacctgattcgcaccaaaactgcataagaaaaagtaagattcacctgcaattgcttagccgccggggtcaaacctggcggcttttttatggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGgc < 1:52859‑M2/64‑1 (MQ=255) ctgattcgcaccaaaactgcataagaagaagtaagattcacctgcaattgcttagccgccggggtcaaacctggcggcttttttatggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTgc > 1:478627‑M2/152‑251 (MQ=255) cgcaccaaaactgcaaaagaaaaagtaagattcacctgcaattgcttagccgccggggtcaaacctggcggcttttttatggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGcgcgcg < 1:104782‑M2/105‑1 (MQ=255) aaaagaagaattaagattcccctgcaattgcttagccgccggggtcaaccctggcggcttttttatggctttaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTaa < 1:347283‑M2/120‑1 (MQ=255) agaagaagtaagtttcaccggcaattgcttagccgccggggtcaaacctggcggtttttttatggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAatat < 1:450333‑M2/123‑1 (MQ=255) agaagaagtaagattcacctgcaattgcttagccgccggggtcaaacctggcggcttttttatggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAatat < 1:375708‑M2/123‑1 (MQ=255) gaagaagtaagattcacctgcaattgcttagccgccggggtcaaacctggcggcttttttatggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAATAtt > 1:255439‑M2/128‑251 (MQ=255) aagaagtaagattcacctgcaattgcttagccgccggggtcaaacctggcggcttttttatggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTTTTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGATTGTCCgtttatactc > 1:486855‑M2/127‑248 (MQ=255) gtaagattcacctgcaattgcttagccgccggggtcaaacctggcggcttttttatggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCCATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAATATTCTCTgg > 2:113662‑M2/122‑251 (MQ=255) aagataccccggaaattgcttagccgccggggtcaaacctggcggtttttttatggaattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAATATTCTCTGGtt < 1:320718‑M2/132‑1 (MQ=255) agattcacctgcaattgcttagccgccggggtcaaacctggcggcttttttatggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAATATTCTCTGGttt > 1:138553‑M2/119‑251 (MQ=255) ctgcaattgcttagccgccggggtcaaacctggcggcttttttatggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAATATTCTCTGGTTTTTAAGgcg > 1:401219‑M2/111‑251 (MQ=255) attgcttgccccccggggtaaaacctggcggtttttttatggcataaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAATATTCTCTGGTTTTTAAGGCGCGTTc < 2:423361‑M2/146‑1 (MQ=255) attgcttagccgccggggtcaaacctgggggcttttttatggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAATATTCTCTGGTTTTTAAGGCGCGTTc < 1:76073‑M2/146‑1 (MQ=255) ttgcttagccgccggggtcaaacctggcggcttttttatggcattaaaaagacccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTAGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGCCCGTTAATATTCTCTGGTTTTTAAGGCGCGTTCt > 1:29896‑M2/105‑251 (MQ=255) agccgccggggtcaaaccgggcggcttttttatggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAATATTCTCTGGTTTTTAAGGCGCGTTCTGTTGcc < 1:82930‑M2/153‑1 (MQ=255) gcttttttagggcattaaaaagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAATATTCTCTGGTTTTTAAGGCGCGTTCTGTTGCCGGTTATATGTCAAGAAGGTATCt < 1:4932‑M2/176‑1 (MQ=255) gcagtaaaaagcccagccgggatggatccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAATATTCTCTGGTTTTTAAGGCGCGTTCTGTTGACGGTTATATGTCAAGAAGGGATCTATGGGTg > 2:134158‑M2/65‑247 (MQ=255) aattaaaaagccccgccgggatggctccggtcagggcgggagacttattctggcaagtaacgcCTGCCCGTCTTAAACAACCGTCGCTGTGCGCCGCCGCAATGATTAGGATGTTTTTTGACTCGGCGCTTGATTCACCTTGTTTCAGATTGCTATTGTGTGCGCGCGTCGAATGACCGGTAATATTCTCTGGTTTTTAAGGCGCGTTCTGTTGCCGGTTatatgtcaagaaggtagttatgtgttagatt < 2:204111‑M2/188‑16 (MQ=255) aaaaaacccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCCCCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAATATTCTCTGGTTTTTAAGGCGCGTTCTGTTGCCGGTTATATGTCAAGAAGGTATCTATGGGTGAGATTAGt < 2:376570‑M2/191‑1 (MQ=255) aagccccgccgggatggctccgggcagggcgggatacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAATATTCTCTGGTTTTTAAGGCGCGTTCTGTTGCCGGTTATATGTCAAGAAGGTATCTATGGGTGAGATTAGTAtt > 1:416029‑M2/57‑250 (MQ=255) tggctccgggcagggcgggatacttattatggcaattaacgcCTGCCCGTCTTACACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGATATTGTGTGCGCGCGTCGAATGACCGTTAATATTCTCTGGTTTTTAAGGCGCGTTCTGTTGCCGGTTATATGTCAAGAAGGTATCTCTGGGGGATATTAGTATTACCAATCTGCTGGt > 1:15138‑M2/43‑250 (MQ=255) tacttattctggcaattaacgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTACTATTCTCTGGTTTTTAAGGCGCGTTCTGTTGCCGGTTATATGTCAAGAAGGTATATATGGGTGAGATTAGTATTACCAAACTGCTGGTAGTTGCGCCGCTGGTCGATct > 2:55261‑M2/23‑251 (MQ=255) attctggcaattaacgcCTGCCCGTCTTAAANAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAATATTCTCTGGTTTTTAAGGCGCGTTCTGTTGCCGGTTATATGTCAAGAAGGTATCTATGGGTGAGATTAGTATTACCAAACTGCTGGTAGTTGCGGCGCTGGTCGTTCTGCTGt < 2:241016‑M2/234‑1 (MQ=255) aacgcCTTCCCGTCTTAAACACCCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAATATTCTCTGGTTTTTAAGGCGCGTTCTGTTGCCGGTTATATGTCAAGAAGGTATCTATGGGTGAGATTAGTATTACCAAACTGCTGGTAGTTGCGGCGCTGGTCGTTCTGCTGTTTGGGACTaaga < 2:303819‑M2/246‑1 (MQ=255) acgcCTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAATATTCTCTGGTTTTTAAGGCGCGTTCTGTTGCCGGTTATATGTCAAGAAGGTATCTATGGGTGAGATTAGTATTACCAAACTGCTGGTAGTTGCGGCGCTGGTCGTTCTGCTGTTTGGGACTaagaa < 2:338212‑M2/247‑1 (MQ=255) cTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAATATTCTCTGGTTTTTAAGGCGCGTTCTGTTGCCGGTTATATGTCAAGAAGGTATCTATGGGTGAGATTAGTATTACCAAACTGCTGGTAGTTGCGGCGCTGGTCGt < 1:52936/226‑1 (MQ=255) cTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAATATTCTCTGGTTTTTAAGGCGCGTTCTGTTGCCGGTTATATGTCAAGAAGGTATCTATGGGTGAGATTAGTATTACCAAACTGCTGGTAGTTGCGGCGCTGGTCGt > 2:52936/1‑226 (MQ=255) | TACTTCCTGCCGCCTGGGTTCGCGGGCCGCTCAAAGAGCATCACTGGTCAACGTTGCTTGCCGCTCGTGCGCTGGATACCACCTGTTATATGGTGGCGGCGGGGGAGTGCGGGAACAAAAATATCGGTCAAAGCCGGATTATAGATCCCTTTGGCGTCACCATTGCGGCAGCGTCAGAAATGCCTGCACTCATTATGGCGGAAGTGACGCCCGAACGTGTGCGTCAGGTGCGCGCGCAACTGCCCGTCTTAAACAACCGTCGCTTTGCGCCGCCGCAATTATTATGATGTTTTTTTACTCGGCGCTTGATTCACCTTGTTACAGATTGCTATTGTGTGCGCGCGTCGAATGACCGTTAATATTCTCTGGTTTTTAAGGCGCGTTCTGTTGCCGGTTATATGTCAAGAAGGTATCTATGGGTGAGATTAGTATTACCAAACTGCTGGTAGTTGCGGCGCTGGTCGTTCTGCTGTTTGGGACTAAGAA > NC_000913/658532‑659017 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |