| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 641,446 | Δ17,325 bp | [uspG]–crcB | 18 genes [uspG], ybdR, yldA, rnk, rna, citT, citG, citX, citF, citE, citD, citC, dpiB, dpiA, dcuC, pagP, cspE, crcB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 641446 | 658770 | 17325 | 36 [0] | [0] 38 | [uspG]–crcB | [uspG],ybdR,yldA,rnk,rna,citT,citG,citX,citF,citE,citD,citC,dpiB,dpiA,dcuC,pagP,cspE,crcB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 641445 | 0 (0.000) | 36 (0.590) | 30/492 | 0.5 | 100% | coding (423/429 nt) | uspG | universal stress protein G |
| ? | NC_000913 | 658771 = | 0 (0.000) | intergenic (‑833/‑176) | crcB/tatE | F(‑) channel protein/twin arginine protein translocation system ‑ TatE protein | |||||
AGCGGGTGACTGTACGACGGTTCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATTGGCGTGGCGGATCACGCTCGAGGCGTTAGAACCTAACAGATGGGTCGAAATCGATGGGTTGCGAGAACCAATAACTACAACATCAGCCCCCAGTTCTTCTGCCAACTCATTGACTTCATCCCGCACGCTACCAAAACGGACATGTTGTTTAATGCGGGAAGGATCGATGGTGAAGTGGCTGACCATCGTTTGCAGACGTTCTTGTGCTTCATGTTGCAGATGCTCTT > NC_000913/641207‑641692 | ggcGGGTGACTGTACGACGGTTCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGCCTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtctta < 1:136747‑M1/250‑13 (MQ=255) gCGGGGGACTGTACGACGGTTCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTTGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGCTGGCTCCGGGCAGGTCGGGATACTTATTCTGGCACTTAACGCctgcccgtctta > 2:332664‑M1/1‑238 (MQ=255) gggTGACTGTACGACGGTTCCGGACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaac < 1:114561‑M1/251‑16 (MQ=255) gACTGTCCGACGTTTCCGTCCAAGCAGATCATCACCGCCACTGGCGATGGTGCCAATGCCTCTCTGAGTGCTTTTGACTCCCTGTTTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGAAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGTTCCGGGCAGGGCGGGATTCTTATTCTGGCAATTAACGCctgcccgtcttaaacaacc < 1:417300‑M1/251‑20 (MQ=255) gACTGTACGACGGTTCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaacc < 1:345051‑M1/251‑20 (MQ=255) gTACGACGGTTCCGTACAAGCAGATCATCATCGCGACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcg > 1:338212‑M1/1‑228 (MQ=255) gtcgtttcgttccaacaatatcctcatcgccactggcgaagttgccaaggcCTCTCTGAGTGCTTTGGACTACCTGCTTCACGCCAAAACTGCATAGGAAGAATTAAAATTCCCCTGCAATTGCTTAGCCGCCGGGGTCAACCCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgcttt < 2:318022‑M1/228‑28 (MQ=255) acgGTTCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttg > 1:241016‑M1/1‑223 (MQ=255) cggttcatcatcgccaCTGGCGAAGGTGCCAAGGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACGGCATAAGAAGAAGTAAGATCCCCCTGCAATTGCTTAGCCGCCGGGGTCAACCCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaattat < 1:240844‑M1/247‑44 (MQ=255) cTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCAGAAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgatttgcgccgccggaattattatgatgtttttttac > 1:407673‑M1/1‑192 (MQ=255) gAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAAAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggc < 1:52859‑M1/251‑65 (MQ=255) cTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgc > 1:478627‑M1/1‑151 (MQ=255) cGCACCAAAACTGCAAAAGAAAAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcg < 1:104782‑M1/250‑106 (MQ=255) aaaagaagaattaAGATTCCCCTGCAATTGCTTAGCCGCCGGGGTCAACCCTGGCGGCTTTTTTATGGCTTTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcgtcgaatgaccgttaa < 1:347283‑M1/249‑121 (MQ=255) agaagaagTAAGTTTCACCGGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGTTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcgtcgaatgaccgttaatat < 1:450333‑M1/251‑124 (MQ=255) agaagaagTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcgtcgaatgaccgttaatat < 1:375708‑M1/251‑124 (MQ=255) gaagaagTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcgtcgaatgaccgttaatatt > 1:255439‑M1/1‑127 (MQ=255) aagaagTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaatttttatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcgtcgattgtccgtttatactc > 1:486855‑M1/1‑126 (MQ=255) gTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgccattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcgtcgaatgaccgttaatattctctgg > 2:113662‑M1/1‑121 (MQ=255) aagataccccggaaattgcttagccgccGGGGTCAAACCTGGCGGTTTTTTTATGGAATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcgtcgaatgaccgttaatattctctggtt < 1:320718‑M1/238‑133 (MQ=255) aGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcgtcgaatgaccgttaatattctctggttt > 1:138553‑M1/1‑118 (MQ=255) cTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcgtcgaatgaccgttaatattctctggtttttaaggcg > 1:401219‑M1/1‑110 (MQ=255) attgcttgccccccggggtaaaacctgGCGGTTTTTTTATGGCATAAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcgtcgaatgaccgttaatattctctggtttttaaggcgcgttc < 2:423361‑M1/239‑147 (MQ=255) aTTGCTTAGCCGCCGGGGTCAAACCTGGGGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcgtcgaatgaccgttaatattctctggtttttaaggcgcgttc < 1:76073‑M1/251‑147 (MQ=255) ttGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGACCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtagctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcgtcgaatgcccgttaatattctctggtttttaaggcgcgttct > 1:29896‑M1/1‑104 (MQ=255) aGCCGCCGGGGTCAAACCGGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcgtcgaatgaccgttaatattctctggtttttaaggcgcgttctgttgcc < 1:82930‑M1/251‑154 (MQ=255) gcTTTTTTAGGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcgtcgaatgaccgttaatattctctggtttttaaggcgcgttctgttgccggttatatgtcaagaaggtatct < 1:4932‑M1/251‑177 (MQ=255) gcagtaaaaAGCCCAGCCGGGATGGATCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcgtcgaatgaccgttaatattctctggtttttaaggcgcgttctgttgacggttatatgtcaagaagggatctatgggtg > 2:134158‑M1/5‑64 (MQ=255) aatTAAAAAGCCCCGCCGGGATGGCTCCGGTCAGGGCGGGAGACTTATTCTGGCAAGTAACGCctgcccgtcttaaacaaccgtcgctgtgcgccgccgcaatgattaggatgttttttgactcggcgcttgattcaccttgtttcagattgctattgtgtgcgcgcgtcgaatgaccggtaatattctctggtttttaaggcgcgttctgttgccggttatatgtcaagaaggtagttatgtgttagatt < 2:204111‑M1/250‑189 (MQ=255) aaaaaacCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattccccttgttacagattgctattgtgtgcgcgcgtcgaatgaccgttaatattctctggtttttaaggcgcgttctgttgccggttatatgtcaagaaggtatctatgggtgagattagt < 2:376570‑M1/250‑192 (MQ=255) aaGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcgtcgaatgaccgttaatattctctggtttttaaggcgcgttctgttgccggttatatgtcaagaaggtatctatgggtgagattagtatt > 1:416029‑M1/1‑56 (MQ=255) tGGCTCCGGGCAGGGCGGGATACTTATTATGGCAATTAACGCctgcccgtcttacacaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgatattgtgtgcgcgcgtcgaatgaccgttaatattctctggtttttaaggcgcgttctgttgccggttatatgtcaagaaggtatctctgggggatattagtattaccaatctgctggt > 1:15138‑M1/1‑42 (MQ=255) tACTTATTCTGGCAATTAACGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcgtcgaatgaccgttactattctctggtttttaaggcgcgttctgttgccggttatatgtcaagaaggtatatatgggtgagattagtattaccaaactgctggtagttgcgccgctggtcgatct > 2:55261‑M1/1‑22 (MQ=255) aTTCTGGCAATTAACGCctgcccgtcttaaanaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcgtcgaatgaccgttaatattctctggtttttaaggcgcgttctgttgccggttatatgtcaagaaggtatctatgggtgagattagtattaccaaactgctggtagttgcggcgctggtcgttctgctgt < 2:241016‑M1/251‑235 (MQ=255) aaCGCcttcccgtcttaaacacccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcgtcgaatgaccgttaatattctctggtttttaaggcgcgttctgttgccggttatatgtcaagaaggtatctatgggtgagattagtattaccaaactgctggtagttgcggcgctggtcgttctgctgtttgggactaaga < 2:303819‑M1/251‑247 (MQ=255) aCGCctgcccgtcttaaacaaccgtcgctttgcgccgccgcaattattatgatgtttttttactcggcgcttgattcaccttgttacagattgctattgtgtgcgcgcgtcgaatgaccgttaatattctctggtttttaaggcgcgttctgttgccggttatatgtcaagaaggtatctatgggtgagattagtattaccaaactgctggtagttgcggcgctggtcgttctgctgtttgggactaagaa < 2:338212‑M1/251‑248 (MQ=255) | AGCGGGTGACTGTACGACGGTTCCGTACAAGCAGATCATCATCGCCACTGGCGAAGGTGCCAAAGCCTCTCTGAGTGCTTTTGACTACCTGATTCGCACCAAAACTGCATAAGAAGAAGTAAGATTCACCTGCAATTGCTTAGCCGCCGGGGTCAAACCTGGCGGCTTTTTTATGGCATTAAAAAGCCCCGCCGGGATGGCTCCGGGCAGGGCGGGATACTTATTCTGGCAATTAACGCACAACCAGCACCGGCAGATTGGCGTGGCGGATCACGCTCGAGGCGTTAGAACCTAACAGATGGGTCGAAATCGATGGGTTGCGAGAACCAATAACTACAACATCAGCCCCCAGTTCTTCTGCCAACTCATTGACTTCATCCCGCACGCTACCAAAACGGACATGTTGTTTAATGCGGGAAGGATCGATGGTGAAGTGGCTGACCATCGTTTGCAGACGTTCTTGTGCTTCATGTTGCAGATGCTCTT > NC_000913/641207‑641692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |