Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,077,568	Δ1,832 bp		[cmtA]–cmtB	[cmtA], cmtB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3077568	3079399	1832	57 [0]	[0] 57	[cmtA]–cmtB	[cmtA],cmtB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3077567	0 (0.000)	57 (0.580)	55/490	0.3	100%	coding (1293/1389 nt)	cmtA	mannitol‑specific PTS enzyme IICB component CmtA
	?	NC_000913	3079400 =	0 (0.000)					intergenic (‑70/+244)	cmtB/tktA	mannitol‑specific PTS enzyme IIA component CmtB/transketolase 1

TGCGAGAATATAATAAGGGCCATTGTTAATGGTGGAATCTTTAATTGCCTGAATGTAATTCTCGCTGATATAGTTTTTATCCAGCAATGATACCATCGAGAAATCGATAGCTTCCTGCCAATCTTTTGCTGAATGTATAACTGAGATTGATGATTCTGGAAAATAATCACTAAGCCGCATAAATTATCCTTATTTTATTTTTAGGGTACCGTCCGGCGGTAAAAATAAAATACTCGTGCGGTTTAATGAAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAGCGACCTTTTTACCCGAAATGCTAATT  >  NC_000913/3079151‑3079645                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                       cgccgctttccaggtcgataaacagacgctgtcagaaattacactcaccagtaattcattatcggtaatttctggcagttcaaatacgcgcagacggacatcccgcttgccataaatagcagcaactttggttttcatttttacctctgtaatcagtgtttatgttcggcggttaattgattaaataaagtgtctagttttggatcgccaatatagttattaatcaatatcagtgttttatccgtcacaaa                                                                                                                                                                                                                                                       <  1:717340‑M2/2‑1 (MQ=255)        ttccaggtcgataaacagacgctgttagaanttacactcaccagtaattcattatcggtaatttctggcagttcaaagacgcgcagacggacatcccgcttgccataaatagcagcaactttggttttcatttttacctctgtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAAtt                                                                                                                                                                                                                                                <  2:351372‑M2/8‑1 (MQ=255)          ccaggtcgataaacagacgctgtcagaaattacactcaccagtaattcattatcggtaatttctggcagttcaaatacgcgcagacggacatcccgcttgccataaatagcagcaactttggttttcatttttacctctgtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGa                                                                                                                                                                                                                                              <  1:419750‑M2/10‑1 (MQ=255)                     aacagacgctgtcagaaattacactcaccagtaattcattatcggtaatttctggcagttcaaatacgcgcagacggacatcccgcttgccataaatagcagcaactttggtttgcatttgtacctctgtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCg                                                                                                                                                                                                                                  <  2:524594‑M2/22‑1 (MQ=255)                       cagacgctgtcagaaattacactcaccagtaattcattatcggtaatttctggcagttcaaatacgcgcagacggacatcccgcttgccataaatagcagcaactttggttttcatttttacctctgtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCACTTGAGCAGGGAAACCGgt                                                                                                                                                                                                                                <  2:637365‑M2/24‑1 (MQ=255)                       cagacgcagtcagaaattacactcaccagtaattcattatcggtaatttctagcagttcaaatacgcgaagacggacatcccgcttgccataaatagcagcacctttggttttcatttttacctctgtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatagccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑ACAATTGAGCAGGGAAACcggg                                                                                                                                                                                                                                >  2:661838‑M2/228‑250 (MQ=255)                                    gaaattacactcaccagtaagtcattatcggtaatttctggcagatcaaatacgcgcagacggacatcccgcttgccataaatagcagcaactttggctttcatttttacctctgtaatcagtgtatatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatacgtccaAACGCNAGTGAGCAGGGAAACCGGGGTTTTGAAAacc                                                                                                                                                                                                                    >  2:379970‑M2/215‑250 (MQ=255)                                                        tcattatcggtaatttctggcagttcaaatacgcgcagacggacatcccgcttgccataaatagcagcaactttggttttcatttttacctctgtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTtat                                                                                                                                                                                                <  1:389333‑M2/56‑1 (MQ=255)                                                                   aatttctggcagttcaaatacgcgcagacggacatcccgcttgccataaatagcagcaactttggttttcatttttacctctgtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGt                                                                                                                                                                                    <  2:658039‑M2/68‑1 (MQ=255)                                                                                 caaatacgcgcagacggacatcccgcttgccataaatagcagcaactttggttttcatttttacctctgtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATaaca                                                                                                                                                                       >  1:214594‑M2/170‑250 (MQ=255)                                                                                           cagacggacatcccgcttgccataaatagcagcaactttggttttcatttttacctctgtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCa                                                                                                                                                             >  2:437652‑M2/160‑250 (MQ=255)                                                                                            agacggacatcccgcttgccataaatagcagcaactttggttttcatttttacctctgtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAAt                                                                                                                                                           <  1:639090‑M2/93‑1 (MQ=255)                                                                                              acggacatcccgattgccataaatagcagcaactttggttttcatttttacctctgtaatcagtgtttatgttcagcggttaattgattaaataaagtgtcgagttttggatcgcccatatagttattaatcaataacagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGACTTATTCATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATa                                                                                                                                                          >  2:625825‑M2/157‑250 (MQ=255)                                                                                               cggacatcccgcttgccataaatagcagccaatttggttttcatttttacctctgtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACg                                                                                                                                                        >  2:31131‑M2/156‑251 (MQ=255)                                                                                                gtacatcccgcttgccataaatagcagcaactttggttttcatttttacctctgtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGGTTTGAAAACAGTGAATGATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGc                                                                                                                                                       <  1:484694‑M2/97‑1 (MQ=255)                                                                                                       ccgcttgccataaatagcagcaactttggttttcatttttacctctgtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGt                                                                                                                                                <  2:637401‑M2/104‑1 (MQ=255)                                                                                                             gccataaatagcagcaactttggttttcatttttacctctgtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGc                                                                                                                                           <  2:153147‑M2/109‑1 (MQ=255)                                                                                                              ccataaatagcagcaactttggttttcatttttacctctgtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCat                                                                                                                                         <  1:482179‑M2/111‑1 (MQ=255)                                                                                                                  aaatagcagcaactttggttttcatttttacctctgtaatcagtgtttatgttcggcggttaattgattcaataaagagtcgagttttggctcgccaataaagttattaatcaatatcagtggtttatacgtcaccAA‑ACAATTGAGCAGGGAAACCGGGGTTTTGAAAAAAGTGAATTATTAATTTCTTATCTAACATTGAATTATAGATATAACAACAAATGTAAATCAGCATATCGTGCTGCATAtt                                                                                                                                      >  2:602413‑M2/137‑250 (MQ=255)                                                                                                                                   gttttcatttttacctctgtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGAtatttatt                                                                                                                    <  2:271017‑M2/132‑1 (MQ=255)                                                                                                                                    ttttcatttttacctctgtaatcagtgtttatgttcggcggttaattgattacataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTTAAAACAGTGAATTTTTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGCTGCCTATTACATAATATATATTTATTg                                                                                                                   >  2:254722‑M2/119‑251 (MQ=255)                                                                                                                                         atttttacctctgtaatcagtgtttatgttcggcggttaattgattaaataaagagtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCatat                                                                                                              >  2:98272‑M2/114‑251 (MQ=255)                                                                                                                                           ttttacctctgtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCAtata                                                                                                             >  2:13532‑M2/112‑250 (MQ=255)                                                                                                                                            tttacctctgtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATaa                                                                                                            <  1:502927‑M2/140‑1 (MQ=255)                                                                                                                                                cctctgtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATAtt                                                                                                       <  2:8412‑M2/145‑1 (MQ=255)                                                                                                                                                     gtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttgggtcgccaatatagatattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGTGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATAAAACAACAAATGTCAATACGCATATCGTGATGACTATTACATAATTGATATTTATTACATAAAAatatttttg                                                                                                   >  2:760163‑M2/102‑247 (MQ=255)                                                                                                                                                     gtaatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATAc                                                                                                                                                         <  1:627510‑M2/95‑1 (MQ=255)                                                                                                                                                     gaaatcagtgtttatgttcggcggttaattgattaaatcaagagtcgagttttggatcgccaatatagttattaataaatatcagtggtttatacgtcacaAC‑GCACTTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATAc                                                                                                                                                         >  2:627510‑M2/102‑196 (MQ=255)                                                                                                                                                      taatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTc                                                                                                                                                              >  1:227650‑M2/101‑190 (MQ=255)                                                                                                                                                      taatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTc                                                                                                                                                              <  2:227650‑M2/90‑1 (MQ=255)                                                                                                                                                       aatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagtttttgatcgccaatatagttattaatcaatatcagtggtttatccgttacaAA‑GCAATTGAGCAAGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATc                                                                                                <  2:402962‑M2/152‑1 (MQ=255)                                                                                                                                                       aatcagtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATc                                                                                                <  2:598420‑M2/152‑1 (MQ=255)                                                                                                                                                           agtgtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTac                                                                                             >  1:660405‑M2/96‑250 (MQ=255)                                                                                                                                                              gtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTccaac                                                                                          <  2:208384‑M2/158‑1 (MQ=255)                                                                                                                                                              gtttatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATGTATTGCATATAAATATTTGTGATCTacaaca                                                                                         <  1:661838‑M2/159‑1 (MQ=255)                                                                                                                                                                 tatgttcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGc                                                                                      >  2:22479‑M2/90‑251 (MQ=255)                                                                                                                                                                      tcggcggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttttccggcacaAA‑GCAATTGGGCAGGGGAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTTTATAAAATTGGGTTATAGATATTACAACAAATGTTAATAAGCATATCGTGATGCATATTTCATAATTGGTATTTATTGCATATAAATATTTGGGATCATCAAAACGCCTTAt                                                                                 >  2:198371‑M2/85‑251 (MQ=255)                                                                                                                                                                          cggttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTAt                                                                             <  1:24016‑M2/171‑1 (MQ=255)                                                                                                                                                                             ttaattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGc                                                                          >  1:239124‑M2/78‑251 (MQ=255)                                                                                                                                                                              taattgattaaataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAAAACGCCTTATCTATTGCt                                                                         >  2:686525‑M2/77‑251 (MQ=255)                                                                                                                                                                                        aataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCaa                                                                >  1:159283‑M2/67‑250 (MQ=255)                                                                                                                                                                                         ataaagtgtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAAc                                                              <  1:666236‑M2/186‑1 (MQ=255)                                                                                                                                                                                         ataaagtgtcgagttttggatcgccaatatagttattaatcaataacagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGAATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGAAAAc                                                              >  2:685106‑M2/66‑251 (MQ=255)                                                                                                                                                                                                gtcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACata                                                       <  2:214594‑M2/193‑1 (MQ=255)                                                                                                                                                                                                 gcgagttttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACatat                                                      <  2:239124‑M2/194‑1 (MQ=255)                                                                                                                                                                                                       tttggatcgccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGt                                                >  1:170071‑M2/52‑251 (MQ=255)                                                                                                                                                                                                               gccaatatagttattaatcaatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAAGGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATaaaaa                                        <  1:354356‑M2/208‑1 (MQ=255)                                                                                                                                                                                                                                 caatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAGCGAcc                       <  1:625825‑M2/225‑1 (MQ=255)                                                                                                                                                                                                                                 caatatcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAGCGACCt                      <  2:658063‑M2/226‑1 (MQ=255)                                                                                                                                                                                                                                     atcagtggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAGCGACCttttt                  <  1:774‑M2/230‑1 (MQ=255)                                                                                                                                                                                                                                           ggtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAGCGACCTTTTTACCCg             <  1:437652‑M2/235‑1 (MQ=255)                                                                                                                                                                                                                                            gtttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAGCGACCTTTTTACCCGa            >  1:371863‑M2/15‑250 (MQ=255)                                                                                                                                                                                                                                              ttatccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAGCGACCTTTTTACCCGaaa          <  1:31131‑M2/238‑1 (MQ=255)                                                                                                                                                                                                                                               tatccgtcacaAA‑GCAATTGAGCAGGGAAANCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAGCTGCCTTTTTACCCGAAAt         <  2:379298‑M2/239‑1 (MQ=255)                                                                                                                                                                                                                                                  ccgtcacaAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAGCGACCTTTTTACCCGAAATGCTa     <  1:368707‑M2/243‑1 (MQ=255)                                                                                                                                                                                                                                                    gtcacaAA‑GCAATTGAGCAGGGAAACCGGAGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAGCGACCTTTTTACCCGAAATGCTAAt   >  2:257103‑M2/7‑251 (MQ=255)                                                                                                                                                                                                                                                      cacaAA‑GCAATTGAGCAGGGAAAACGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAATCGGACATATCAAGGTAATAAAAAAGGTCGCCGAAGCGACCTTTTTACCCGAAATGCTAAtt  <  1:395953‑M2/246‑1 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                       TGCGAGAATATAATAAGGGCCATTGTTAATGGTGGAATCTTTAATTGCCTGAATGTAATTCTCGCTGATATAGTTTTTATCCAGCAATGATACCATCGAGAAATCGATAGCTTCCTGCCAATCTTTTGCTGAATGTATAACTGAGATTGATGATTCTGGAAAATAATCACTAAGCCGCATAAATTATCCTTATTTTATTTTTAGGGTACCGTCCGGCGGTAAAAATAAAATACTCGTGCGGTTTAATGAAA‑GCAATTGAGCAGGGAAACCGGTGTTTTGAAAACAGTGAATTATTAATTTCTTATATAACATTGAGTTATAGATATAACAACAAATGTCAATACGCATATCGTGATGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCCGAAGCGACCTTTTTACCCGAAATGCTAATT  >  NC_000913/3079151‑3079645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑