Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,077,568	Δ1,832 bp		[cmtA]–cmtB	[cmtA], cmtB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3077568	3079399	1832	57 [0]	[0] 57	[cmtA]–cmtB	[cmtA],cmtB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3077567	0 (0.000)	57 (0.580)	55/490	0.3	100%	coding (1293/1389 nt)	cmtA	mannitol‑specific PTS enzyme IICB component CmtA
	?	NC_000913	3079400 =	0 (0.000)					intergenic (‑70/+244)	cmtB/tktA	mannitol‑specific PTS enzyme IIA component CmtB/transketolase 1

CGCCGCTTTCCAGGTCGATAAACAGACGCTGTCAGAAATTACACTCACCAGTAATTCATTATCGGTAATTTCTGGCAGTTCAAATACGCGCAGACGGACATCCCGCTTGCCATAAATAGCAGCAACTTTGGTTTTCATTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACACGTTTCACGCGCCCTTCCAGACTGGCATGAGTAACGACGATATCCGCATCCGCAGGCACGTTTTCTATGGCGTAATGTTTTACTTCAATTGCCAGCCCCGCTTTTTCCAGGCGTTTACGGAAGGTGGTCGCGCCCATCGCACTGGAGCCCATCCCCGCATCGCAAACAAAGGCGATACGCTTAACCCTGCTTAACGAGAATGCACCCTCTTGTTTCATCGCCTTAACCGCATTGGCTGACTGAGCA  >  NC_000913/3077319‑3077813                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                       cgccgcTTTCCAGGTCGATAAACAGACGCTGTCAGAAATTACACTCACCAGTAATTCATTATCGGTAATTTCTGGCAGTTCAAATACGCGCAGACGGACATCCCGCTTGCCATAAATAGCAGCAACTTTGGTTTTCATTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCTAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGTTTTATCCGTCACAaa                                                                                                                                                                                                                                                      <  1:717340‑M1/251‑3 (MQ=255)        ttCCAGGTCGATAAACAGACGCTGTTAGAANTTACACTCACCAGTAATTCATTATCGGTAATTTCTGGCAGTTCAAAGACGCGCAGACGGACATCCCGCTTGCCATAAATAGCAGCAACTTTGGTTTTCATTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaatt                                                                                                                                                                                                                                                <  2:351372‑M1/250‑9 (MQ=255)          ccAGGTCGATAAACAGACGCTGTCAGAAATTACACTCACCAGTAATTCATTATCGGTAATTTCTGGCAGTTCAAATACGCGCAGACGGACATCCCGCTTGCCATAAATAGCAGCAACTTTGGTTTTCATTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattga                                                                                                                                                                                                                                              <  1:419750‑M1/250‑11 (MQ=255)                     aaCAGACGCTGTCAGAAATTACACTCACCAGTAATTCATTATCGGTAATTTCTGGCAGTTCAAATACGCGCAGACGGACATCCCGCTTGCCATAAATAGCAGCAACTTTGGTTTGCATTTGTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccg                                                                                                                                                                                                                                  <  2:524594‑M1/251‑23 (MQ=255)                       cAGACGCTGTCAGAAATTACACTCACCAGTAATTCATTATCGGTAATTTCTGGCAGTTCAAATACGCGCAGACGGACATCCCGCTTGCCATAAATAGCAGCAACTTTGGTTTTCATTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcacttgagcagggaaaccggt                                                                                                                                                                                                                                <  2:637365‑M1/251‑25 (MQ=255)                       cAGACGCAGTCAGAAATTACACTCACCAGTAATTCATTATCGGTAATTTCTAGCAGTTCAAATACGCGAAGACGGACATCCCGCTTGCCATAAATAGCAGCACCTTTGGTTTTCATTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATAGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaaacaattgagcagggaaaccggg                                                                                                                                                                                                                                >  2:661838‑M1/1‑227 (MQ=255)                                   gAAATTACACTCACCAGTAAGTCATTATCGGTAATTTCTGGCAGATCAAATACGCGCAGACGGACATCCCGCTTGCCATAAATAGCAGCAACTTTGGCTTTCATTTTTACCTCTGTAATCAGTGTATATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATACGTC‑CAaacgcnagtgagcagggaaaccggggttttgaaaacc                                                                                                                                                                                                                   >  2:379970‑M1/1‑214 (MQ=255)                                                        tCATTATCGGTAATTTCTGGCAGTTCAAATACGCGCAGACGGACATCCCGCTTGCCATAAATAGCAGCAACTTTGGTTTTCATTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttat                                                                                                                                                                                                <  1:389333‑M1/250‑57 (MQ=255)                                                                   aaTTTCTGGCAGTTCAAATACGCGCAGACGGACATCCCGCTTGCCATAAATAGCAGCAACTTTGGTTTTCATTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagt                                                                                                                                                                                    <  2:658039‑M1/251‑69 (MQ=255)                                                                                 cAAATACGCGCAGACGGACATCCCGCTTGCCATAAATAGCAGCAACTTTGGTTTTCATTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataaca                                                                                                                                                                       >  1:214594‑M1/1‑169 (MQ=255)                                                                                           cAGACGGACATCCCGCTTGCCATAAATAGCAGCAACTTTGGTTTTCATTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtca                                                                                                                                                             >  2:437652‑M1/1‑159 (MQ=255)                                                                                            aGACGGACATCCCGCTTGCCATAAATAGCAGCAACTTTGGTTTTCATTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaat                                                                                                                                                           <  1:639090‑M1/251‑94 (MQ=255)                                                                                              aCGGACATCCCGATTGCCATAAATAGCAGCAACTTTGGTTTTCATTTTTACCTCTGTAATCAGTGTTTATGTTCAGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCCATATAGTTATTAATCAATAACAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgacttattcatttcttatataacattgagttatagatataacaacaaatgtcaata                                                                                                                                                          >  2:625825‑M1/1‑156 (MQ=255)                                                                                               cGGACATCCCGCTTGCCATAAATAGCAGCCAATTTGGTTTTCATTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacg                                                                                                                                                        >  2:31131‑M1/1‑155 (MQ=255)                                                                                                gtacaTCCCGCTTGCCATAAATAGCAGCAACTTTGGTTTTCATTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtggtttgaaaacagtgaatgattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgc                                                                                                                                                       <  1:484694‑M1/249‑98 (MQ=255)                                                                                                       ccGCTTGCCATAAATAGCAGCAACTTTGGTTTTCATTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgt                                                                                                                                                <  2:637401‑M1/251‑105 (MQ=255)                                                                                                             gCCATAAATAGCAGCAACTTTGGTTTTCATTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgc                                                                                                                                           <  2:153147‑M1/250‑110 (MQ=255)                                                                                                              ccATAAATAGCAGCAACTTTGGTTTTCATTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcat                                                                                                                                         <  1:482179‑M1/251‑112 (MQ=255)                                                                                                                  aaaTAGCAGCAACTTTGGTTTTCATTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTCAATAAAGAGTCGAGTTTTGGCTCGCCAATAAAGTTATTAATCAATATCAGTGGTTTATACGTCACCaaacaattgagcagggaaaccggggttttgaaaaaagtgaattattaatttcttatctaacattgaattatagatataacaacaaatgtaaatcagcatatcgtgctgcatatt                                                                                                                                      >  2:602413‑M1/1‑136 (MQ=255)                                                                                                                                   gTTTTCATTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttatt                                                                                                                    <  2:271017‑M1/251‑133 (MQ=255)                                                                                                                                    ttttCATTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTACATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgtttttaaaacagtgaatttttaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgctgcctattacataatatatatttattg                                                                                                                   >  2:254722‑M1/1‑118 (MQ=255)                                                                                                                                         aTTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGAGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatat                                                                                                              >  2:98272‑M1/1‑113 (MQ=255)                                                                                                                                           ttttACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatata                                                                                                             >  2:13532‑M1/1‑111 (MQ=255)                                                                                                                                            tttACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataa                                                                                                            <  1:502927‑M1/250‑141 (MQ=255)                                                                                                                                                ccTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatt                                                                                                       <  2:8412‑M1/251‑146 (MQ=255)                                                                                                                                                     gaaatcAGTGTTTATGTTCGGCGGTTAATTGATTAAATCAAGAGTCGAGTTTTGGATCGCCAATATAGTTATTAATAAATATCAGTGGTTTATACGTCACAacgcacttgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatac                                                                                                                                                         >  2:627510‑M1/3‑101 (MQ=255)                                                                                                                                                     gTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGGTCGCCAATATAGATATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagtgaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagataaaacaacaaatgtcaatacgcatatcgtgatgactattacataattgatatttattacataaaaatatttttg                                                                                                   >  2:760163‑M1/1‑101 (MQ=255)                                                                                                                                                     gTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatac                                                                                                                                                         <  1:627510‑M1/196‑96 (MQ=255)                                                                                                                                                      tAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtc                                                                                                                                                              >  1:227650‑M1/1‑100 (MQ=255)                                                                                                                                                      tAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtc                                                                                                                                                              <  2:227650‑M1/190‑91 (MQ=255)                                                                                                                                                       aaTCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTTGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTTACAaagcaattgagcaaggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatc                                                                                                <  2:402962‑M1/251‑153 (MQ=255)                                                                                                                                                       aaTCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatc                                                                                                <  2:598420‑M1/251‑153 (MQ=255)                                                                                                                                                           aGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctac                                                                                             >  1:660405‑M1/1‑95 (MQ=255)                                                                                                                                                              gtTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctccaac                                                                                          <  2:208384‑M1/250‑159 (MQ=255)                                                                                                                                                              gtTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatgtattgcatataaatatttgtgatctacaaca                                                                                         <  1:661838‑M1/251‑160 (MQ=255)                                                                                                                                                                 tATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctacaacacgc                                                                                      >  2:22479‑M1/1‑89 (MQ=255)                                                                                                                                                                      tCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTTTCCGGCACAaagcaattgggcaggggaaccggtgttttgaaaacagtgaattattaatttcttttataaaattgggttatagatattacaacaaatgttaataagcatatcgtgatgcatatttcataattggtatttattgcatataaatatttgggatcatcaaaacgccttat                                                                                 >  2:198371‑M1/1‑84 (MQ=255)                                                                                                                                                                          cggTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctacaacacgccttatctat                                                                             <  1:24016‑M1/251‑172 (MQ=255)                                                                                                                                                                             ttAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctacaacacgccttatctattgc                                                                          >  1:239124‑M1/1‑77 (MQ=255)                                                                                                                                                                              tAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctacaaaacgccttatctattgct                                                                         >  2:686525‑M1/1‑76 (MQ=255)                                                                                                                                                                                        aataaaGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctacaacacgccttatctattgcttgtccgcaa                                                                >  1:159283‑M1/1‑66 (MQ=255)                                                                                                                                                                                         ataaaGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctacaacacgccttatctattgcttgtccgcaaac                                                              <  1:666236‑M1/251‑187 (MQ=255)                                                                                                                                                                                         ataaaGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATAACAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgaatataaatatttgtgatctacaacacgccttatctattgcttgtccgaaaac                                                              >  2:685106‑M1/1‑65 (MQ=255)                                                                                                                                                                                                gtCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctacaacacgccttatctattgcttgtccgcaaacggacata                                                       <  2:214594‑M1/251‑194 (MQ=255)                                                                                                                                                                                                 gcgAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctacaacacgccttatctattgcttgtccgcaaacggacatat                                                      <  2:239124‑M1/250‑195 (MQ=255)                                                                                                                                                                                                       tttGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctacaacacgccttatctattgcttgtccgcaaacggacatatcaaggt                                                >  1:170071‑M1/1‑51 (MQ=255)                                                                                                                                                                                                               gCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaaggtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctacaacacgccttatctattgcttgtccgcaaacggacatatcaaggtaataaaaa                                        <  1:354356‑M1/251‑209 (MQ=255)                                                                                                                                                                                                                                 cAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctacaacacgccttatctattgcttgtccgcaaacggacatatcaaggtaataaaaaaggtcgccgaagcgacct                      <  2:658063‑M1/251‑227 (MQ=255)                                                                                                                                                                                                                                 cAATATCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctacaacacgccttatctattgcttgtccgcaaacggacatatcaaggtaataaaaaaggtcgccgaagcgacc                       <  1:625825‑M1/250‑226 (MQ=255)                                                                                                                                                                                                                                     atCAGTGGTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctacaacacgccttatctattgcttgtccgcaaacggacatatcaaggtaataaaaaaggtcgccgaagcgaccttttt                  <  1:774‑M1/251‑231 (MQ=255)                                                                                                                                                                                                                                           ggTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctacaacacgccttatctattgcttgtccgcaaacggacatatcaaggtaataaaaaaggtcgccgaagcgacctttttacccg             <  1:437652‑M1/250‑236 (MQ=255)                                                                                                                                                                                                                                            gTTTATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctacaacacgccttatctattgcttgtccgcaaacggacatatcaaggtaataaaaaaggtcgccgaagcgacctttttacccga            >  1:371863‑M1/1‑14 (MQ=255)                                                                                                                                                                                                                                              ttATCCGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctacaacacgccttatctattgcttgtccgcaaacggacatatcaaggtaataaaaaaggtcgccgaagcgacctttttacccgaaa          <  1:31131‑M1/250‑239 (MQ=255)                                                                                                                                                                                                                                               tATCCGTCACAaagcaattgagcagggaaancggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctacaacacgccttatctattgcttgtccgcaaacggacatatcaaggtaataaaaaaggtcgccgaagctgcctttttacccgaaat         <  2:379298‑M1/250‑240 (MQ=255)                                                                                                                                                                                                                                                  ccGTCACAaagcaattgagcagggaaaccggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctacaacacgccttatctattgcttgtccgcaaacggacatatcaaggtaataaaaaaggtcgccgaagcgacctttttacccgaaatgcta     <  1:368707‑M1/251‑244 (MQ=255)                                                                                                                                                                                                                                                    gTCACAaagcaattgagcagggaaaccggagttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctacaacacgccttatctattgcttgtccgcaaacggacatatcaaggtaataaaaaaggtcgccgaagcgacctttttacccgaaatgctaat   >  2:257103‑M1/1‑6 (MQ=255)                                                                                                                                                                                                                                                      cacaaagcaattgagcagggaaaacggtgttttgaaaacagtgaattattaatttcttatataacattgagttatagatataacaacaaatgtcaatacgcatatcgtgatgcatattacataattgatatttattgcatataaatatttgtgatctacaacacgccttatctattgcttgtccgcaatcggacatatcaaggtaataaaaaaggtcgccgaagcgacctttttacccgaaatgctaatt  <  1:395953‑M1/250‑247 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                       CGCCGCTTTCCAGGTCGATAAACAGACGCTGTCAGAAATTACACTCACCAGTAATTCATTATCGGTAATTTCTGGCAGTTCAAATACGCGCAGACGGACATCCCGCTTGCCATAAATAGCAGCAACTTTGGTTTTCATTTTTACCTCTGTAATCAGTGTTTATGTTCGGCGGTTAATTGATTAAATAAAGTGTCGAGTTTTGGATCGCCAATATAGTTATTAATCAATATCAGTGGTTTATCCGTCACACGTTTCACGCGCCCTTCCAGACTGGCATGAGTAACGACGATATCCGCATCCGCAGGCACGTTTTCTATGGCGTAATGTTTTACTTCAATTGCCAGCCCCGCTTTTTCCAGGCGTTTACGGAAGGTGGTCGCGCCCATCGCACTGGAGCCCATCCCCGCATCGCAAACAAAGGCGATACGCTTAACCCTGCTTAACGAGAATGCACCCTCTTGTTTCATCGCCTTAACCGCATTGGCTGACTGAGCA  >  NC_000913/3077319‑3077813

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑