Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,498,768 9486 bp→CCC [pyrS]fryB [pyrS], pyrR, ypdC, fryA, ypdE, ypdF, fryC, fryB

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2498768 2508253 9486 65 [0] [0] 64 [pyrS]–fryB [pyrS],pyrR,ypdC,fryA,ypdE,ypdF,fryC,fryB

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 24987670 (0.000)64 (0.660)
+CCC
57/486 0.3 100% coding (97/1698 nt) pyrS sensor histidine kinase PyrS
?NC_000913 2508254 = 0 (0.000)intergenic (‑12/+207) fryB/glk putative PTS enzyme IIB component FryB/glucokinase

GCATTATCAAGAGATGCATTGCTAATACACCATTTATCTATCAATCCCCTTTTAAAATTGTGGTTTTTCCTCAAAAACGGCCTGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGCGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAACGTACGTATTATCGCGGTGATGTCCGGCGGGATTCTGTTTGGCCCGTGGGTAGGCATCATTACCGGCGTGATTGCGGGTATTCACCGGTATTTAATTGATATCGGCGGCGTGACGGCGATCCCCTG  >  NC_000913/2498528‑2499011
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                    
gCATTATCAAGAGATGCATTGCTAATACACCATTTATCTATCAATCCCCTTTTAAAATTGTGGTTTTTCCTCAAAACCGGCCTGCTGGTCATCAGCCTTCAGGTTCCCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcag                                                                                                                                                                                                                                            <  2:558132‑M1/250‑11 (MQ=255)
       aaatagaTGCTTTGATAATTCACCATTTATCTTTCAAGCCCCTTTGAAAATTGGGGTTTTTCCTAAAAAACGGTCTGTTGGTCAGAAGTCTTCAGGGTACCTATCATAGAGGTTTAATCCTTATTCAGGGTCACCCGTTCACGAATTATTCAACATGCTGCTTTCGGTCTGCTATAGGGCGGCTTGAATGCTTATCTGCCTGTTCTTTCTCATCCTTTCCCGCCTGTTTcgcgccccgttaagttatagtt                                                                                                                                                                                                                                    <  2:211485/247‑19 (MQ=255)
          gagaTGCATTGCTAATACACCATTTATCTATCAATCCCCTTTTAAAATTGTGGTTTTTCCTCAAAAACGGCCTGCTGGTCATCAGCCTTCAGGTTTCCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCGGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgac                                                                                                                                                                                                                                 <  1:448122‑M1/251‑22 (MQ=255)
          gagaTGCATTGCTAATACACCATTTATCTATCAATCCCCTTTTAAAATTGTGGTTTTTCCTCAAAAACGGCCTGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgac                                                                                                                                                                                                                                 <  2:200201‑M1/251‑22 (MQ=255)
             aTGCATTGCTAATACACCATTTATCTATCAATCCCCTTTTAAAATTGTGGTTTTTCCTCAAAAACGGCCTGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttccgtgatagttgacg                                                                                                                                                                                                                                >  1:300594‑M1/1‑227 (MQ=255)
               gCATTGCTAATACACCATTTATCTATCAATCCCCTTTTAAAATTGTGGTTTTTCCTCAAAAACGGCCTGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtg                                                                                                                                                                                                                            >  1:212942‑M1/1‑225 (MQ=255)
                cATTGTTAATACCCCATTTATCTACCAACCCCCTTTTAAAATTGTGGTTTTTCCTCAAAAACGGCCTGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCCCCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtga                                                                                                                                                                                                                           <  2:300594‑M1/251‑28 (MQ=255)
                       aaTACCCCATTTATCTATCAATCCCCTTTTAAAATTGGGGTTTTTCCTCAAAAACGGCCTGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCGGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaatta                                                                                                                                                                                                                      <  2:10605‑M1/249‑33 (MQ=255)
                       aaTACACCATTTATCTATCAATCCCCTTTTAAAATTGTGGTTTTTCCTCAAAAACGGCCTGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattat                                                                                                                                                                                                                     <  1:501042‑M1/250‑34 (MQ=255)
                         tACACCATTTATCTATCAATCCCCTTTTAAAATTGTGGTTTTTCCTCAAAAACGGCCTGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATTCTTATCTTCCTGTTCTTTCTCATCCGGATCCGCCTTTTTCGCCccccggtcagtgttagttgccgagtggaattatta                                                                                                                                                                                                                   >  2:196374‑M1/1‑215 (MQ=255)
                              cATTTATCTATCAATCCCCTTTTAAAATTGTGGTTTTTCCTCAAAAACGGCCTGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgc                                                                                                                                                                                                             <  1:180399‑M1/251‑42 (MQ=255)
                                    tctatcAATCCCCTTTTAAAATTGTGGTTTTTCCTCAAAAACGGCCTGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaac                                                                                                                                                                                                        >  1:685495‑M1/1‑204 (MQ=255)
                                       atcatcccccttttaaAAGTGTGGTTTTTCCTCAAAAACGGCCTGCTGGTCAGCAGCTTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCAAGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaat                                                                                                                                                                                                    <  2:520006‑M1/245‑51 (MQ=255)
                                         cAATCCCCTTTTAAAATTGTGGTTTTTCCTCAAAAACGGCCTGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCTCGccccgttcagtgatagttgccgggtgaaattatgaacgtgcaaaacaaatcc                                                                                                                                                                                                  >  2:15518‑M1/1‑199 (MQ=255)
                                            tCCCCTTTTAAAATTGTGGTTTTTCCTCAAAAACGGCCTGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCTTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatc                                                                                                                                                                                                   <  2:481271‑M1/247‑52 (MQ=255)
                                            tCCCCTTTTAAAATTGTGGTTTTTCCTCAAAAACGGCCTGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatc                                                                                                                                                                                                   >  1:481271‑M1/1‑196 (MQ=255)
                                             ccccTTTTAAAATTGTGTTTTTTCCCCAAAAACGGCTGGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGACACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCTGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgt                                                                                                                                                                                              <  1:29979‑M1/251‑57 (MQ=255)
                                                cTTTTAAAATTGTGGTTTTTCCTCAAAAACGGCCTGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGAGTTAATGCTTATTTGCCTGTTCTTTCTCATCCGTACCCGCCTGTTTCGCGccccgttccgtgatagttgatgagggtaattatgaaccgggcatttctccgtgggaatg                                                                                                                                                                                           >  2:429113‑M1/1‑192 (MQ=255)
                                                     aaaaTTGTGGTTTTTCCTCAAAAACGGCCTGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccaga                                                                                                                                                                                       <  1:92278‑M1/250‑64 (MQ=255)
                                                           gtgGTTTTTCCTCAAAAACGGCCTGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtggtagttgacgagggaaattatgaacgtgccaaacaaatcgccgttaccagacaaata                                                                                                                                                                                 >  1:91535‑M1/1‑181 (MQ=255)
                                                                           aaCGGCCTGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtggaattatgaacgggcaaaacaaatcgccggtaccagacaaataatgcatttactggaga                                                                                                                                                                 >  2:410400‑M1/1‑165 (MQ=255)
                                                                            aCGGCCTGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaat                                                                                                                                                               >  2:223348‑M1/1‑164 (MQ=255)
                                                                             cGGCCTGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCCGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcattttctggagaatt                                                                                                                                                              >  2:614867‑M1/1‑163 (MQ=255)
                                                                                   gctgGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatc                                                                                                                                                          <  1:714139‑M1/249‑93 (MQ=255)
                                                                                       gTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGGTCGGGCAGCGTTAATGCTTATCTGCCTGTTTTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttccgtgatagttgacgagtgaaattatgaacgggcaaaacaaaacgccgttaccagacaaaaaatgcatttactggagaattaatcccgctg                                                                                                                                                    >  1:636722‑M1/1‑153 (MQ=255)
                                                                                            caGCTTTCAGGGTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCAAGAAATATTCAACATGCTGCTGGCGGTCTTCGACCGGGCAGCGTTAATGCTTACCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacgg                                                                                                                                               <  2:225457‑M1/251‑104 (MQ=255)
                                                                                               ccttagggttccctAACATAAAGGTTTAATCNTTATTCAGAGTCCCCCGGCCACGAAATATTCACCATGCGGCGGGCGGTCTTCAATCGGGCAGCGTTAATGCTTACCGGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaag                                                                                                                                            <  2:367475‑M1/245‑107 (MQ=255)
                                                                                                      gTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGGTCTTTCTCATCCGTATCCCCCTGTTTCGCGcccagttcagttatagttgaagagtgaaattatgaacgtgcaaaacaaaccgccgttaccagacaaataatgcatttactggagaattaatcacgatgtacggaagtgtgacg                                                                                                                                     >  2:480767‑M1/1‑138 (MQ=255)
                                                                                                             aTCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaa                                                                                                                                                            >  1:346114‑M1/1‑131 (MQ=255)
                                                                                                             aTCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCGGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcg                                                                                                                              <  1:15518‑M1/251‑121 (MQ=255)
                                                                                                             aNCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaa                                                                                                                                                            <  2:346114‑M1/221‑91 (MQ=255)
                                                                                                                aTAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCGTCGGTCGGGCCGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTAGCGccccgttcagtgatagttgacgagtgaaattatgaacgagcaaaaaaaatcgccgttaccagacaaaaaatgcaattaatggagaagtaatcccgctgaacgggagggggacgcagggagacc                                                                                                                           >  2:455637‑M1/1‑128 (MQ=255)
                                                                                                                  agagGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcagggcgacctt                                                                                                                         >  1:333350‑M1/1‑126 (MQ=255)
                                                                                                                         tAATCCTTATTCAGAGTCCCCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgagg                                                                                                                   <  1:525659‑M1/250‑132 (MQ=255)
                                                                                                                           aTCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGTCGGTCTTCGCTCGGGCAGCGTAAATGCTTATCTGACCGTTCTTTCTAATCCGAATACGCCTGTTTCGCGccccgttcagtgatatatgacgagtgaaattatgcacgtgcaaaacaaatcgccattaccagacaaataatgcattttctggagaattaatccagctgtacggaagtgtgacgcaggatgacactgtgagggg                                                                                                                 >  2:192091‑M1/1‑117 (MQ=255)
                                                                                                                           aTCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgagggga                                                                                                                <  1:756793‑M1/251‑135 (MQ=255)
                                                                                                                           aTCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTGAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgagggga                                                                                                                <  1:39904‑M1/251‑135 (MQ=255)
                                                                                                                           aTCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATACTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgaatttactggagcattaatcccgcggtacggcagtgtgacgcaggtagaacttgtgagggg                                                                                                                 >  2:138609‑M1/1‑117 (MQ=255)
                                                                                                                            tCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgccggtcgaccttgtgaggggac                                                                                                               >  1:639724‑M1/1‑116 (MQ=255)
                                                                                                                             ccTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCCGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgaggggac                                                                                                               <  1:196374‑M1/250‑136 (MQ=255)
                                                                                                                                   tCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgaggggacacaaag                                                                                                         <  1:614867‑M1/250‑142 (MQ=255)
                                                                                                                                             ccGTGAACGAAATATTCAACATGCTGCTGGCGGTCTTCGCTCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgaggggacacaaagaaaaattgaat                                                                                              <  2:198719‑M1/251‑153 (MQ=255)
                                                                                                                                                  cACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgggaggggacacaaagaaaaattgaataaact                                                                                         >  2:181093‑M1/1‑94 (MQ=255)
                                                                                                                                                   aCGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgaggggacacaaagaaaaattgaataaactg                                                                                        >  1:287809‑M1/1‑93 (MQ=255)
                                                                                                                                                              aaCATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGcccctttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgggacgccggtcgacctttggaggggccacaaaggaaaattgaataaaatgtatgatttaa                                                                              >  2:671119‑M1/1‑82 (MQ=255)
                                                                                                                                                                   gttgctggcGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgaggggacacaaagaaaaattgaataaactgtatgatttaaaagat                                                                         <  2:212942‑M1/248‑174 (MQ=255)
                                                                                                                                                                   ccggtttgcggttgtcgttcagtcagcgttaatgtttttctgcctgtTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgttaagcatttcgaccttgtgaggggacacaaagaaaaattgaataaactgtatgatttaaaagat                                                                         <  2:706004‑M1/227‑174 (MQ=255)
                                                                                                                                                                            ggTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgaggggacacaaagaaaaattgaataaactgtatgatttaaaagattatcggg                                                                  >  1:473369‑M1/1‑68 (MQ=255)
                                                                                                                                                                                 tCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgaggggacacaaagaaaaattgaataaactgtatgatttaaaagattatcgggagagtt                                                            <  1:223348‑M1/249‑187 (MQ=255)
                                                                                                                                                                                            gCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgaggggacacaaagaaaaattgaataaactgtatgatttaaaagattatcgggagagttacctcccgatat                                                >  2:197762‑M1/1‑52 (MQ=255)
                                                                                                                                                                                            gCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgaggggacacaaagaaaaattgaataaactgtatgatttaaaagattatcgggagagttacctcccgatat                                                >  1:642462‑M1/1‑52 (MQ=255)
                                                                                                                                                                                               ttAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcattt                                                                                                                                                                         >  1:581749‑M1/1‑49 (MQ=255)
                                                                                                                                                                                               ttAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcattt                                                                                                                                                                         <  2:581749‑M1/126‑78 (MQ=255)
                                                                                                                                                                                                     cTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgaggggacacaaagaaaaattgaataaactgtatgatttaaaagattatcgggagagttacctcccgatataaaaggaagg                                      >  1:318636‑M1/1‑43 (MQ=255)
                                                                                                                                                                                                                gTTCTTTCTCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgaggggacacaaagaaaaattgaataaactgtatgatttaaaagattatcgggagagttacctcccgatataaaaggaaggatttacagaat                           <  1:543384‑M1/251‑220 (MQ=255)
                                                                                                                                                                                                                     ttctCATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgaggggacacaaagaaaaattgaataaactgtatgatttaaaagattatcgggagagttacctcccgatataaaaggaaggatttacagaatgtg                        <  1:480767‑M1/249‑223 (MQ=255)
                                                                                                                                                                                                                        tcATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgaggggacacaaagaaaaattgaataaactgtatgatttaaaagattat                                                                      >  2:290308‑M1/1‑24 (MQ=255)
                                                                                                                                                                                                                        tcATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgaggggacacaaagaaaaattgaataaactgtatgatttaaaagattat                                                                      <  1:290308‑M1/200‑177 (MQ=255)
                                                                                                                                                                                                                         cATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgaggggacacaaagaaaaattgaataaactgtatgatttaaaagattatcgggagagttacctcccgatataaaaggaaggatttacagaatgtgacctaa                  <  2:287809‑M1/251‑229 (MQ=255)
                                                                                                                                                                                                                         cATCCGTATCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgaggggacacaaagaaaaattgaataaactgtatgatttaaaagattatcgggagagttacctcccgatataaaaggaaggatttacagaatgtgaccta                   >  2:162959‑M1/1‑23 (MQ=255)
                                                                                                                                                                                                                              ggctccgCCTGTTTCGCGccccgttcagtgatagtttacgagagaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgaggggacacaaagaaaaattgaataaactgtatgatttaaaagattatcgtgagagttacctcccgatataaaaggaaggatttacagaatgtgacctaaggtct             <  2:454151‑M1/248‑234 (MQ=255)
                                                                                                                                                                                                                               tATCCGCCTGTTTCGCGctccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtccggaagtgtgacgcaggtcgaccttgtgaggggacacaaagaaaaattgaataaactgtatgatttaaaagattatcgggagagttacctcccgatataaaaggacggatttacagaatgtgacctaaggtctg            >  2:653676‑M1/1‑17 (MQ=255)
                                                                                                                                                                                                                                 tCCGCCTGTTTCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgaggggacacaaagaaaaattgaataaactgtatgatttaaaagattatcgggagagttacctcccgatataaaaggaaggatttacagaatgtgacctaaggtctggc          >  1:700563‑M1/1‑15 (MQ=255)
                                                                                                                                                                                                                                          ttCGCGccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgaggggacacaaagaaaaattgaataaactgtatgatttaaaagattatcgggagagttacctcccgatataaaaggaaggatttacagaatgtgacctaaggtctggcgtaaatgt  <  1:599360‑M1/250‑245 (MQ=255)
                                                                                                                                                                                                                                          tgcgcgccccgttcagtgatagttgacgagtgaaattatgaacgtgcaaaacaaatcgccgttaccagacaaataatgcatttactggagaattaatcccgctgtacggaagtgtgacgcaggtcgaccttgtgaggggacacaaagaaaaattgaataaactgtatgatttaaaagattatcgggagagttacctcccgatataaaaggaaggatttacagaatgtgacctaaggtctggcgtaaatgt  <  1:39913‑M1/248‑245 (MQ=255)
                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                                    
GCATTATCAAGAGATGCATTGCTAATACACCATTTATCTATCAATCCCCTTTTAAAATTGTGGTTTTTCCTCAAAAACGGCCTGCTGGTCATCAGCCTTCAGGTTACCTATCATAGAGGTTTAATCCTTATTCAGAGTCACCCGTGCACGAAATATTCAACATGCTGCTGGCGGTCTTCGATCGGGCAGCGTTAATGCTTATCTGCCTGTTCTTTCTCATCCGTATCCGCCTGTTTCGCGAACTGTTGCACAAGTCGGCGCACTCCCCAAAAGAATTGCTCGCCGTTACCGCCATTTTCTCGCTGTTCGCCCTGTTCAGCACCTGGTCCGGCGTTCCCGTAGAAGGCTCGCTGGTGAACGTACGTATTATCGCGGTGATGTCCGGCGGGATTCTGTTTGGCCCGTGGGTAGGCATCATTACCGGCGTGATTGCGGGTATTCACCGGTATTTAATTGATATCGGCGGCGTGACGGCGATCCCCTG  >  NC_000913/2498528‑2499011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: