Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,499,401 Δ12,725 bp yhfL[yhfZ] yhfL, frlA, frlB, frlC, frlD, frlR, yhfS, yhfT, yhfU, php, yhfW, yhfX, yhfY, [yhfZ]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3499401 3512125 12725 72 [0] [0] 73 yhfL–[yhfZ] yhfL,frlA,frlB,frlC,frlD,frlR,yhfS,yhfT,yhfU,php,yhfW,yhfX,yhfY,[yhfZ]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 34994000 (0.000)72 (0.740) 66/492 0.2 100% intergenic (+199/‑48) cysG/yhfL siroheme synthase/DUF4223 domain‑containing lipoprotein YhfL
?NC_000913 3512126 = 0 (0.000)coding (219/906 nt) yhfZ putative DNA‑binding transcriptional regulator YhfZ

GTCGGGTTGTTGGCCTGCGCGATAAACTGAACTGGTTCTCCAACCATTAATTTAACCCGGGCCAGAGAATTCTGGCCTTCTTAATGACTCTTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTGCTTATATTCATATAATCAATGAATATTAATTAATATATAATACATAGGGAATGTAAATGAACAAATTTATTAAAGTTGCACTGGTAGGTGCAGTACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAGAAATCGGCTAACACCGGTTTAATT  >  NC_000913/3499152‑3499650
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                          
gTCGGGTTGTTGGCCTGCGCGATAAACTGAANTGGTTCTCCAACCATTAATTTAACCCGGGCCAGAGAATTCTGGCCTTCTTAATGACTCTTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCct                                                                                                                                                                                                                                                          <  2:339596‑M1/251‑3 (MQ=255)
  cGGGTTGTTGGCCTGCGCGATAAACTGAACTGGTTCTCCAACCATTAATTTAACCCGGGCCAGAGAATTCTGGCCTTCTTAATGACTCTTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcg                                                                                                                                                                                                                                                        >  1:736415‑M1/1‑247 (MQ=255)
                            gaactgGTTCTCCAACCATTAATTTAACCCGGGCCAGAGAATTCTGGCCTTCTTAATGACTCTTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacg                                                                                                                                                                                                                              <  2:239526‑M1/251‑31 (MQ=255)
                            gaactgGTTCTCCAACCATTAATTTAACCCGGGCCAGAGAATTCTGGCCTTCTTAATGACTCTTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacg                                                                                                                                                                                                                              >  2:252752‑M1/1‑221 (MQ=255)
                               ctgGTTCTCCAACCATTAATTTAACCCGGGCCAGAGAATTCTGGCCTTCTTAATGACTCTTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcg                                                                                                                                                                                                                           >  1:115356‑M1/1‑218 (MQ=255)
                                  gTTCTCCAACCATTAATTTAACCCGGGCCAGAGAATTCTGGCCTTCTTAATGACTCTTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttc                                                                                                                                                                                                                        >  1:164119‑M1/1‑215 (MQ=255)
                                  gTTCTCCAACCATTAATTGAACCCGGGCCAGAGAATTCTGGCCTTCTTAATGACTCTTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttc                                                                                                                                                                                                                        <  2:159367‑M1/251‑37 (MQ=255)
                                       ccAACCATTAATTTAACCCGGGCCAGAGAATTCTGGCCTTCTTAATGACTCTTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTCTATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatcc                                                                                                                                                                                                                   >  1:74659‑M1/1‑210 (MQ=255)
                                            cATTAATTTAACCCGGGCCAGAGAATTCTGGCCTTCTTAATGACTCTTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatc                                                                                                                                                                                                              <  2:315857‑M1/251‑47 (MQ=255)
                                                 aTTTAACCCGGGCCAGAGAATTCTGGCCTTCTTAATGACTCTTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctcc                                                                                                                                                                                                         >  1:630465‑M1/1‑200 (MQ=255)
                                                                   aaTTCTGGCCTTCTTAATGACTCTTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgtttt                                                                                                                                                                                       <  1:739023‑M1/251‑70 (MQ=255)
                                                                   aaTTCTGGCCTTCTTAATGACTCTTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGGTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgtttt                                                                                                                                                                                       >  1:334085‑M1/1‑182 (MQ=255)
                                                                      tCTGGCCTTCTTAATGACTCTTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttca                                                                                                                                                                                     >  1:680310‑M1/1‑179 (MQ=255)
                                                                        tGGCCTTCTTAATGACTCTTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacg                                                                                                                                                                                  >  1:377270‑M1/1‑177 (MQ=255)
                                                                         ggCCTTCTTAATGACTCTTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaac                                                                                                                                                                                   <  1:468928‑M1/249‑74 (MQ=255)
                                                                            cttcttAATGCATCTTTTTCTATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggc                                                                                                                                                                              >  1:172941‑M1/1‑173 (MQ=255)
                                                                                ttAATGACTCTTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgc                                                                                                                                                                          >  2:120716‑M1/1‑169 (MQ=255)
                                                                                   aTGACTCTTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtc                                                                                                                                                                       >  1:746126‑M1/1‑166 (MQ=255)
                                                                                     gACTCTTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtc                                                                                                                                                                       >  2:497197‑M1/1‑164 (MQ=255)
                                                                                         ctTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggcc                                                                                                                                                                  >  1:637204‑M1/1‑160 (MQ=255)
                                                                                               atatatTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagatatctgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggat                                                                                                                                                           <  2:213102‑M1/251‑98 (MQ=255)
                                                                                                 atatTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatg                                                                                                                                                          >  1:699803‑M1/1‑152 (MQ=255)
                                                                                                  tatTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatga                                                                                                                                                         >  1:722645‑M1/1‑151 (MQ=255)
                                                                                                         cAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcngcctgcgtcaggccaacggatgaacggcatt                                                                                                                                                 >  2:378562‑M1/1‑144 (MQ=255)
                                                                                                          aaaTAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTCCAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggttgaacggcattc                                                                                                                                                >  1:485341‑M1/1‑143 (MQ=255)
                                                                                                          aaaTAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattc                                                                                                                                                <  2:80298‑M1/251‑109 (MQ=255)
                                                                                                                   aTAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgcc                                                                                                                                         >  1:33961‑M1/1‑134 (MQ=255)
                                                                                                                    tAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagc                                                                                                                                      >  1:315819‑M1/1‑133 (MQ=255)
                                                                                                                    tAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAACGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagc                                                                                                                                      >  1:428831‑M1/1‑133 (MQ=255)
                                                                                                                        cccTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcat                                                                                                                                  >  2:288048‑M1/1‑129 (MQ=255)
                                                                                                                                aaataTTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggtt                                                                                                                          <  2:115356‑M1/251‑131 (MQ=255)
                                                                                                                                        tCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcg                                                                                                                  >  2:538260‑M1/1‑113 (MQ=255)
                                                                                                                                            cTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcagtccaacggatgaacggcgttcatntgccagcccatctatggttttcaatcgatt                                                                                                               >  2:395052‑M1/1‑109 (MQ=255)
                                                                                                                                              aaTGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattacc                                                                                                            >  2:221514‑M1/1‑107 (MQ=255)
                                                                                                                                               aTGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATCCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcatgccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccg                                                                                                           <  1:723224‑M1/251‑146 (MQ=255)
                                                                                                                                                tGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcggttaccgc                                                                                                          >  1:373542‑M1/1‑105 (MQ=255)
                                                                                                                                                           cACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccggcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaagcgattaccgcacgtttcaccc                                                                                               <  2:543623‑M1/251‑158 (MQ=255)
                                                                                                                                                              cGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaac                                                                                            >  2:8680‑M1/1‑91 (MQ=255)
                                                                                                                                                                ttACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaaca                                                                                           >  1:747754‑M1/1‑89 (MQ=255)
                                                                                                                                                                 tACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaa                                                                                          >  2:739703‑M1/1‑88 (MQ=255)
                                                                                                                                                                 tACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaa                                                                                          >  1:89904‑M1/1‑88 (MQ=255)
                                                                                                                                                                  aCAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaat                                                                                        >  1:529559‑M1/1‑87 (MQ=255)
                                                                                                                                                                              aaaaTTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATAGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataaagggccagcg                                                                            >  2:610446‑M1/1‑75 (MQ=255)
                                                                                                                                                                                   tAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtg                                                                       >  1:184816‑M1/1‑70 (MQ=255)
                                                                                                                                                                                    aaGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtg                                                                       >  2:536853‑M1/1‑69 (MQ=255)
                                                                                                                                                                                        cATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggtattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgac                                                                  <  2:237119‑M1/251‑187 (MQ=255)
                                                                                                                                                                                           tctctcaCTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcgcttttcacccaacaaataacgggccagcttcgtgatgacg                                                                 <  2:746126‑M1/246‑188 (MQ=255)
                                                                                                                                                                                             gCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgacgacgc                                                             >  1:470453‑M1/1‑60 (MQ=255)
                                                                                                                                                                                                cACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgacgacgcctt                                                          >  1:293320‑M1/1‑57 (MQ=255)
                                                                                                                                                                                                cACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGGATATTCctcgaccagagaactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgacgacgcctt                                                          <  2:16096‑M1/251‑195 (MQ=255)
                                                                                                                                                                                                 ccttacgtcaattaaatATGCCTGTATCGTTCTTAACGAGCAGTCTTCGTATTTTCccagaccagatacctgccattgcgcccacggcgttcaatccgtctcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgacgacgccttc                                                         <  2:680310‑M1/243‑196 (MQ=255)
                                                                                                                                                                                                    gACGCCAATTAAATATTCCTTTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgacgacgccttct                                                        <  2:637204‑M1/249‑197 (MQ=255)
                                                                                                                                                                                                    gACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgacgacgccttct                                                        <  1:536853‑M1/249‑197 (MQ=255)
                                                                                                                                                                                                       gCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCcacgaccagataactgccattgcgcccacggggttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgacgacgccttctttttt                                                   <  1:673359‑M1/251‑202 (MQ=255)
                                                                                                                                                                                                          aaTTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgacgacgccttcttttttgat                                                >  1:277499‑M1/1‑47 (MQ=255)
                                                                                                                                                                                                            ttAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcac                                                                                                 <  2:729263‑M1/200‑156 (MQ=255)
                                                                                                                                                                                                            ttAAATATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcac                                                                                                 >  1:729263‑M1/1‑45 (MQ=255)
                                                                                                                                                                                                               aaTATTCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgacgacgccttcttttttgataaacg                                           >  1:581144‑M1/1‑42 (MQ=255)
                                                                                                                                                                                                                   ttCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCcacgaccagataactgccattgcgcccacggcgttcaatccgtagcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgacgacgccttcttttttgataaacgttc                                        <  2:89904‑M1/250‑213 (MQ=255)
                                                                                                                                                                                                                    tCCTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgacgacgccttcttttttgataaacgttcg                                       >  2:94900‑M1/1‑37 (MQ=255)
                                                                                                                                                                                                                     ccTGTATCGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgacgacgccttcttttttgataaacgttcgac                                     <  1:252752‑M1/251‑216 (MQ=255)
                                                                                                                                                                                                                            cGTTCTTAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgacgacgccttcttttttgataaacgttcgacgcataat                              >  2:764790‑M1/1‑29 (MQ=255)
                                                                                                                                                                                                                             gTTCTTAACGAGCAGTCTTCGTATCTTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaccggctgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgtctaccccttcttttttgctaaacgttcgccgcatact                              >  2:167365‑M1/1‑28 (MQ=255)
                                                                                                                                                                                                                                 ttAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcatgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgacgacgccttcttttttgataaacgttcgacgcataatcaatt                         >  2:20826‑M1/1‑24 (MQ=255)
                                                                                                                                                                                                                                  tAACGAGCAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgacgacgccttcttttttgataaacgttcgacgcataataaattt                        >  1:407575‑M1/1‑23 (MQ=255)
                                                                                                                                                                                                                                         cAGTCTTCGTATATTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgacgacgccttcttttttgataaacgttcgacgcataataaattttcagta                  >  2:397013‑M1/1‑16 (MQ=255)
                                                                                                                                                                                                                                           gtcttcgtatattcctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgacgacgccttcttttttgataaacgttcgacgcataataaattttcagtaaat               <  1:221514‑M1/244‑238 (MQ=255)
                                                                                                                                                                                                                                              ttcgtatattcctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgacgacgccttcttttttgataaacgttcgacgcataataaattttcagtaaattg             >  1:345804‑M1/5‑11 (MQ=255)
                                                                                                                                                                                                                                              ttcggatattcctcgaccagataactgccattgagcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatctgccagctcatctatggttttcaatcgattaccgcacttttcacacaacaaataacgggcccgcgtcgtgatgtcgacgccttcttttttgataaacgttcgccgcataataaattttcaataaattg             >  2:15362‑M1/6‑11 (MQ=255)
                                                                                                                                                                                                                                                 gtatatTCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcccccaacaaataacgggccagcgtcgtgatgacgacgccttcttttttgataaacgttcgacgcatattaaattttcagtaaattgaatt         >  2:301654‑M1/2‑8 (MQ=255)
                                                                                                                                                                                                                                                       tCctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgacgacgccttcttttttgataaacgttcgacgcataataaattttcagtaaattgaatatttat    <  1:497197‑M1/250‑249 (MQ=255)
                                                                                                                                                                                                                                                        cctcgaccagataactgccattgcgcccacggcgttcaatccgtatcgctccgcttgactccagcgttttcaacgcggcctgcgtcaggccaacggatgaacggcattcatttgccagctcatctatggttttcaatcgattaccgcacttttcacccaacaaataacgggccagcgtcgtgatgacgacgccttcttttttgataaacgttcgacgcataataaattttcagtaaattgaatatttatat  >  2:465692‑M1/1‑1 (MQ=255)
                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                          
GTCGGGTTGTTGGCCTGCGCGATAAACTGAACTGGTTCTCCAACCATTAATTTAACCCGGGCCAGAGAATTCTGGCCTTCTTAATGACTCTTTTTATATATTCAGCAAATAAAACATAGCCCCTTAATAAATATTATCTGCTAATGGGTTATATTCACCGTTACAGCGACTTACAAAATTAAGTCATTCGCTCACTGACGCCAATTAAATATTCCTGTATCGTTCTTAACGAGCAGTCTGCTTATATTCATATAATCAATGAATATTAATTAATATATAATACATAGGGAATGTAAATGAACAAATTTATTAAAGTTGCACTGGTAGGTGCAGTACTGGCTACGTTAACTGCATGTACTGGTCATATTGAAAACCGTGATAAGAACTGCTCTTACGACTACCTGCTGCACCCGGCAATTTCTATTTCTAAAATCATTGGCGGTTGCGGTCCTACTGCACAGTAAGTCTCTGACAGAAATCGGCTAACACCGGTTTAATT  >  NC_000913/3499152‑3499650

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.