| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,804,790 | Δ5,840 bp | proV–[ygaH] | proV, proW, proX, ygaZ, [ygaH] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2804790 | 2810629 | 5840 | 34 [0] | [0] 34 | proV–[ygaH] | proV,proW,proX,ygaZ,[ygaH] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2804789 | 0 (0.000) | 34 (0.590) | 33/490 | 0.4 | 100% | intergenic (+328/‑26) | nrdF/proV | ribonucleoside‑diphosphate reductase 2 subunit beta/glycine betaine ABC transporter ATP binding subunit ProV |
| ? | NC_000913 | 2810630 = | 0 (0.000) | coding (287/336 nt) | ygaH | L‑valine exporter, YgaH component | |||||
TCTGTTGCATTATTCGCCTGAAACCACAATATTCAGGCGTTTTTTCGCTATCTTTGACAAAAAATATCAACTTTCTCGATTTGCTCTCAGCCCTTATATCACGGGAAATTCCGGCGATTTGCTCGCATCAATATTCATGCCACATTTGCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGACAAATAAAGGAATCTTTCTATTGCATGGCAATTAAATTAGAAATTAAAAATCTTTATAAAATATTTGGCGAGCATCCACAGCGAGCGTTCAAATATATCGAACAAGGACTTTCAAAAGAACAAATTCTGGAAAAAACTGGGCTATCGCTTGGCGTAAAAGACGCCAGTCTGGCCATTGAAGAAGGCGAGATATTTGTCATCATGGGATTATCCGGCTCGGGTAAATCCACAATGGTACGCCTTCTCAA > NC_000913/2804562‑2805038 | tctGTTGCATTATTCGCCTGAAACCACAATATTCAGGCGTTTTTTCGCTATCTTTGACAAAAAATATCAACTTTCTCGATTTGCTCTCAGCCCTTATATCACGGGAAATTCCGGCGATTTGCTCGCATCAATATTCATGCCACATTTGCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctc > 1:306968‑M1/1‑228 (MQ=255) gTTGCATTATTCGCCTGAAACCACAATATTCAGGCGTTTTTTCGCTATCTTTGACAAAAAATATCAACTTTCTCGATTTGCTCTCAGCCCTTATATCACGGGAAATTCCGGCGATTTGCTCGCATCAATATTCATGCCACATTTGCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgc < 2:113464‑M1/250‑26 (MQ=255) ttCGCCTGAAACCAAAATATTCAGGCGTTTTTTCGCTATCTTTGACAAAAAATATCAACATTCTCGATTTGCTCTCAGCCCTTATATCACGGGAAATTCCGGCGATTTGCTCGCATCAATATTCATGCCACATTTGCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgcctggaaagtg > 2:63308‑M1/1‑216 (MQ=255) tCGCCTGAAACCACAATATTCAGGCGTTTTTTCGCTATCTTTGACAAAAAATATCAACTTTCTCGATTTGCTCTCAGCCCTTATATCACGGGAAATTCCGGCGATTTGCTCGCATCAATATTCATGCCACATTTGCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgcctggaaagtg > 1:221236‑M1/1‑215 (MQ=255) gAAACCCCAATATTCAGGCGTTTTTTCGCTATCTTTGACAAAAAATATCAACTTTCTCGATTTGCTCTCAGCCCTTATATCACGGGAAATTCCGGCGATTTGCTCGCATCAATATTCATGCCACATTTGCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgcctggaaagtgatggcg < 2:94805‑M1/250‑42 (MQ=255) gAAACCACAATATTCAGGCGTTTTTTCGCTATCTTTGACAAAAAATATCAACTTTCTCGATTTGCTCTCAGCCCTTATATCACGGGAAATTCCGGCGATTTGCTCGCATCAATATTCATGCCACATTTGCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgcctggaaagtgatggcga < 1:318854‑M1/251‑43 (MQ=255) atTCAGGCGTTGTTGCGCTATCTTTGACAAAAAATATCAACTTTCTCTATTTGCTCTCATCCCTTATATCACGTGAAATTCCGGCGATTTGCTCGCATCAATATTCATGCCACATTTGCCATCAGGGGTTGCCTCATATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCTTCATAGttagtgcgctggcctatgggctcgcctggaaagtgatggcgattatataacc < 2:303022‑M1/250‑53 (MQ=255) ggCGTTTTTTCGCTATCTTTGACAAAAAATATCAACTTTCTCGATTTGCTCTCAGCCCTTATATCCCGGGAAATTCCGGCGATTTGCTCGCATCAATATTCATGCCACAATTGCCATCAGGGGTTGCCTCAGATTCTCCGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctc > 1:296882‑M1/1‑193 (MQ=255) ggCGTTTTTTCGCTATCTTTGACAAAAAATATCAACTGTCTCGATTTGCTCTCAGCCCTTATAGCACGGGAAATTCCTGCGATTTGCTCGCATCAATATTCATGCCACATTTGCCATCAGGGGTTGCCTCAGTTTCTCAGTATTTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACAGAGttatttcgctgtcctatgggctc < 2:296882‑M1/216‑24 (MQ=255) ttCGCTATCTTTGACAAAAAATATCATCTTTCTCGATTTGCTCTCAGCCCTTATATCACGGGAAATGCCGGCGATTTGCTCGCATCAATATTCATGCCACAGTTGCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgcctggaaagtgatggcgattatatagcccacaagaatcatt < 2:427491‑M1/250‑66 (MQ=255) ttGACAAAAAATATCAACTTGCTCGATTTGCTCTCAGCCCTTATATCACGGGAAATTCCGGCGATTTGCTCGCATCAATATTCATGCCACATGTGCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTTTGTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaa < 1:82659‑M1/247‑73 (MQ=255) ttCTCGATTTGCTCTCAGCCCTTATATCACGGGAAATGCCGGCGATTTGCTCGCATCAATATTCAGGTCACATTTGCCTTCATGGGTTGCCTCAGATTCTCAGTATGTTAGTGTAGAAAAAAGTGTCTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgtgctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacatttactttatttg < 1:202072‑M1/250‑95 (MQ=255) cAGCCCTTATATCACGGGAAATTCCGGCGATTTGCTCGCATCAATATTCATGCCACATTTGCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacatttactttatttgtcactgtcgttactat < 1:133090‑M1/251‑111 (MQ=255) cAGCCCTTATATCACGGGAAATTCCGGCGATTTGCTCGCATCAATATTCATGCCACATTTGCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacatttactttatttgtcactgtcgttactat > 2:436305‑M1/1‑141 (MQ=255) atatCACGGGAAATTCCGGCGATTTGCTCGCATCAATATTCATGCCACATTTGCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGGGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacatttactttatttgtcactgtcgttactatatcggctg < 2:342335‑M1/251‑119 (MQ=255) tCACGGGAAATTCCGGCGATTTGCTCGCATCAATATTCATGCAACATTTGCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGGGACTATTTCCATTGGGAAATATATAGACATAGttagtgcgctggcctatgggctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaaaaatacatttactttatttgtcacggtcgttcctatataggctgaa > 2:245359‑M1/1‑130 (MQ=255) ggAAATTCCGGCGATTTGCGCGCATCAATATTCATGCCACATTTGCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacatttactttatttgtcactgtcgttactatatcggctgaaattaat < 1:228973‑M1/251‑127 (MQ=255) cGGCGATTTGCTCGCATCAATATTCATGCCACATTTGCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTGCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacatttactttatttttcactgtcgttactatatcggctgaaattaatgaggtcat < 1:190476‑M1/251‑135 (MQ=255) gCTCGCATCAATATTCATGCCACATTTGCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaaaaatacattaactttatttgtcactgtcgttactatatcggctgaaattaatgtggtcatacccaaatt > 2:457321‑M1/1‑108 (MQ=255) atgcaggccacatTTGCCATCAGGGGTTGCCTCAGATTCGAAGTATGTTAGGGTAGAAAAAAGGGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgcgggcctatgggctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacatttactttatttgtcacggtcgttactatatcggctgaaattaatgatgtaatgcctaaatggatagttcgtt < 2:83788‑M1/244‑155 (MQ=255) gCCATCAGGGGTTGCCTCAGATTCTCAGTATTTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacatttactttatttgtcactgtcgttactatatcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaa < 1:162312‑M1/251‑171 (MQ=255) gCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgcctgaaaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacatttactttatttgtcactgtcgttactatatcggctgaaattaatgaggtcatacccaaatggatagttcgtttccgcccattgaaca > 2:34883‑M1/1‑81 (MQ=255) aGGGGATGCCTTCGATTCTCAGAATGTTAGGGTAGAAAAAAGGGGATATTTCCATTGGGTAATATATTGACATAGatagagcgctggcctatgggctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacattttctttatttgtcactgtcgttactatatcggctgaaattaattaggtcatacccaaatgggtagatcgtttacgcccattgcaacaatgct > 2:92331‑M1/1‑75 (MQ=255) gCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacatttactttatttggcactgtcgttactatatcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaattt < 1:112585‑M1/250‑183 (MQ=255) gCCTCAAATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGCCATAGttagtgcgctggcctatgggctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacatttactttatttgtcactgtcgttactatatcggctgaaattaatgaagtcatacccaaatggatagttcgtttactcccattgaacaaatgctaaaattt < 2:70191‑M1/250‑183 (MQ=255) cAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacatttactttatttgtcactgtcgttactatatcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaatttcgcgc < 1:84993‑M1/251‑188 (MQ=255) gTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGttagggcgctggcctatgggctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacatttactttatttgtcactgtctttactatatcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaatttcgcgccagccgccac < 1:161955‑M1/251‑198 (MQ=255) aTGTTCGGGTAGAAAAACGAGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgcctggcaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacatttactttatttgtcactgtcgttactatatcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaatttcacgcccgccgccacgc > 2:158924‑M1/1‑52 (MQ=255) gTAGAAAAAAGAGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacatttactttatttgtcaatgtcgttactatatcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaatttcgcgccagccgccacgaagattttc > 1:20908‑M1/1‑44 (MQ=255) aaGTGACTATTTCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacatttactttatttgtcactgtcgttactatatcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaaacaatgctaaaatttcgcgccagccgccacgaagattttccttatc > 1:120600‑M1/1‑36 (MQ=255) tCCATTGGGTAATATATCGACATAGttagtgcgctggcctatgggctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacatttactttatttgtcactgtcgttactatatcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaatttcgcgccagccgccacgaagattttccttatcaggagatccttct > 1:311529‑M1/1‑25 (MQ=255) aaTATATCGACATAGttagtgcgctggcctatgggtgcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacatttactttatttgtcactgtcgttactatatcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaatttcgcgccagccgccacgaagattttccttatcaggagatccttctgactcgtctt < 1:354779‑M1/251‑237 (MQ=255) gACATAGttagtgcgctggcctatgggctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacatttactttatttgtcactgtcgttactatatcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaatttcgcgccagccgccacgaagattttccttatcaggagatccttctgactcgtctttgcatgc > 1:73614‑M1/1‑7 (MQ=255) gttagagcgctggcctatgggctcgcctggaaagtgatggcgattatataacccacaagaatcatttttctaaaacaatacatttactttatttgtcactgtcgttactatatcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaatttcgcgcaagccgccacgaagattttccttatcaggagatccttcagacccgtctttgcatgccaatga > 2:310332‑M1/1‑1 (MQ=255) | TCTGTTGCATTATTCGCCTGAAACCACAATATTCAGGCGTTTTTTCGCTATCTTTGACAAAAAATATCAACTTTCTCGATTTGCTCTCAGCCCTTATATCACGGGAAATTCCGGCGATTTGCTCGCATCAATATTCATGCCACATTTGCCATCAGGGGTTGCCTCAGATTCTCAGTATGTTAGGGTAGAAAAAAGTGACTATTTCCATTGGGTAATATATCGACATAGACAAATAAAGGAATCTTTCTATTGCATGGCAATTAAATTAGAAATTAAAAATCTTTATAAAATATTTGGCGAGCATCCACAGCGAGCGTTCAAATATATCGAACAAGGACTTTCAAAAGAACAAATTCTGGAAAAAACTGGGCTATCGCTTGGCGTAAAAGACGCCAGTCTGGCCATTGAAGAAGGCGAGATATTTGTCATCATGGGATTATCCGGCTCGGGTAAATCCACAATGGTACGCCTTCTCAA > NC_000913/2804562‑2805038 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |