| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,520,673 | Δ21,396 bp | [mcbR]–[narZ] | 17 genes [mcbR], yncD, yncE, ansP, yncG, yncH, ydcD, yncO, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, [narZ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1520673 | 1542068 | 21396 | 29 [0] | [0] 30 | [mcbR]–[narZ] | [mcbR],yncD,yncE,ansP,yncG,yncH,ydcD,yncO,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,[narZ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1520672 | 0 (0.000) | 29 (0.440) | 27/478 | 0.7 | 100% | coding (411/666 nt) | mcbR | DNA‑binding transcriptional dual regulator McbR |
| ? | NC_000913 | 1542069 = | 0 (0.000) | coding (522/3741 nt) | narZ | nitrate reductase Z subunit alpha | |||||
ATGATGTAGCTGGAGTTATACCAGTCGGCAGATTCCGGTACGTCGGTTTGCTCGCCCCAGGTCATCGGCGAGGCGGGCGGCAGGTCGCAATACCAGTCGTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGTTGGAGCGGATAAACCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCCGC > NC_000913/1541839‑1542319 | ggaatgcgctttgtgtcgcaccggcacaagcngtgacagttccggaagtggggaaaggacaattagacgtaatcaagctgatccgctacgaactggaatgaatggcagttgctctggctgttgaaaacctcaccccgcaagaccttgcggaactccaggaattgctcgagaaatgacagcaggcgcaagaaaagggcgacatggagcaaaacattaatgtagacaggctaGGTAGCGGCGGCAATCAGCTg < 2:218409‑M2/21‑1 (MQ=255) atgcgctttctgtcgcacctgcacaagcatttacagttccggaagtggggaaacgtcaattagacgaaatcaatcggatccgctccgaactggaattaatggcagttgctctggctgttgaaaacctcaccccgcaagaccttgcggaactccaggaattgctcgagaaattacagcaggcgcaagaaaagggcgacatggaacaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGtt < 1:58347‑M2/24‑1 (MQ=255) tgtcgcacctgcacaagcatttacagttccggaagtggggaaacgtcaattagacgaaatcaatcggatccgctacgaactggaattaatggcagttgctctggctgttgaaaacctcaccccgcaagaccttgcggaactccaggaattgctcgagaaattacagcaggcgcaagaaaagggcgacatggaacaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGc > 1:180799‑M2/218‑251 (MQ=255) cacaagcatttacagttccggaagtggggaaacgtcaattagacgaaatcaatcggatccgctacgaactggaattaatggcagttgctctggctgttgaaaacctcaccccgcaagaccttgcggaactccaggaattgctcgagaaattacagcaggcgcaagaaaagggcgacatggaacaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGTTGGAGCg < 1:244423‑M2/45‑1 (MQ=255) acaagcatttacagttccggaagtggggaaacgtcaattagacgaaatcaatcggatccgctacgaactggaattaatggcagttgctctggctgttgaaaacctcaccccgcaagaccttgcggaactccaggaattgctcgagaaattacagcaggcgcaagaaaagggcgacatggaacaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGTTGGAGCgg < 2:156199‑M2/46‑1 (MQ=255) ttacagttccggaagtggggaaacgtcaattagacgaaatcaatcggatccgctacgaactggaattaatggcagttgctctggctgttgaaaacctcaccccgcaagaccttgcggaactccaggaattgctcgagaaattacagcaggcgcaagaaaagggcgacatggaacaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGTTGGAGCGGATAAAcc < 1:447365‑M2/53‑1 (MQ=255) gttccggaagtggggaaacgtcaattagacgaaatcaatcggatccgctacgaactggaattaatggcagttgctctggctgttgaaaacctcacaccgcaagaccttgcggaactccaggaattgctcgagaaattacagcaggcgcaaaaaaagggcgacatggaacaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGATGGAGCGGATAAAACcgccgc > 1:445673‑M2/193‑251 (MQ=255) gccggaagagtggaaacgtcaattaggcgaaatcaatcggacccgctacgaactggaattaatggcagttgctctggctgttgaaacccgctccccgcaagaccgtgcggaactccaggaattgctcgagaaattacagcaggcgcaagaaaagggcgacatggaacaaatcattaatgtaaacaggctaGTTAGCGGCGGCAGTCAGCTGGTTTAGTTCCTGCCAGTTGGAGCGGATAAACCCGCCgcgc < 2:136027‑M2/61‑1 (MQ=255) gaagtggggaaacgtcaattagacgaaatcaatcggatccgctacgaactggaattaatggcagttgctctggctgttgaaaacctcaccccgcaagaccttgcggaactccaggaattgctcgagaaattacagcaggcgcaagaaaagggcgacatggaacaaatcattaatgtaaacaggctaGTTAGCGGCGGAAATCAGCCGGTTTAGTTCCTGCCCGTTGGGGCGGATAAACCAGCCGCGCCCAc > 2:489759‑M2/187‑251 (MQ=255) tagacgaaatcaatcggatccgctacgaactggaattaatggcagttgctctggctgttgaaaacctcaccccgcaagaccttgcggaactccaggaattgctcgagaaattacagcaggcgcaagaaaagggcgacatggaacaaatcattaatgtaaacaggcgaGTTAGCGGCGGCAATCAGCTGGCTTAGTTCCTGCCAGTTGGACCGGGTAAACCCGCCGCGCCCACGCACTTGTTTGTAGCTc > 2:82786‑M2/168‑249 (MQ=255) aatcggatccgctacgaactggaattaatggcagttgctctggctgttgaaaacctcaccccgcaagaccttgcggaactccaggaattgctcgagaaattacagcaggcgcaagaaaagggcgacatggaacaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGTTGGAGCGGATAAACCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCg > 1:50526‑M2/157‑251 (MQ=255) tggcagttgctctggctgttgaaaacctcaccccgcaagaccttgcggaactccaggcattgctcgagaaattacagcaggcgcacgaaaagggcgacatggaacaaatcattaatgtaaccaggctaGTTAGCGGCGGCAATCAGCTGGTTTAATTCCTGCCAGGTGGAGCGGAGAAACCCGCCGCGCCCACGCACTTGTTTGTAGATCAGGACCCTTTGCGACTCGTTCCTAATCGATGCCCACGcc > 2:167520‑M2/129‑249 (MQ=255) ctggctgttgaaaacctccccccgcaagcccttgcggaactccaggaattgctagagaaattacagcaggcgcaagaaaagggcgacatggaacaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGCTGGAGCGGGTAAACCCGCCGCGCCCACGCACTTGTTTGACGCTCAGGCACTTTTGCGGAACGTTCATAATCGATGCCCACGCCAgtaccggctagc > 2:330454‑M2/118‑246 (MQ=255) gttgaaaacctcaccccgcaagaccttgcggaactccaggaattgctcgagaaattacagcaggcgcaagaaaagggcgacatggaacaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGTTGGAGCGGATAAACCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGtt > 1:2898‑M2/112‑251 (MQ=255) ccccgcaagaccttgcggaactccaggaattgctcgagaaattacagcaggcgcaagaaaagggcgacatggaacaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGTTGGAGCGGATAAACCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATATTCGATGCCCACGCCAGTACCGGATCGCTGGGTTGCTTGAGGGCTTc > 2:450977‑M2/99‑251 (MQ=255) agaccttgcggaactccaggaattgctcgagaaattacagcaggcgcaagaaaagggcgacatggaacaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGGTTAGTTCCTGCCAGTTGGAGCGGATAAACCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCCCGCCAGTACCGGATCGCTGTTTTGCTTGAGGGCTTCGCGCcac > 2:79603‑M2/92‑251 (MQ=255) ccttgcggaactccaggaattgctcgagaaattacagcaggcgcaagaaaagggcgacatggaacaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGTTGGAGCGGATAAACCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGt > 1:453913‑M2/89‑251 (MQ=255) ttgctcgagaaattacagcaggcgccagaaaagggcgacatggaacaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGTTGGAGCGGATAAACCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGa > 1:152604‑M2/70‑250 (MQ=255) gaaattacagcaggcgcaagaaaagggcgacatggaacaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGTTGGAGCGGATAAACCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCACTCAGTCGTTTACGAATGAGCggg > 2:443308‑M2/62‑251 (MQ=255) gcaggcgcaagaaaagggcgacatggaacaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGTTGGAGCGGATAAACCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAgg > 2:339791‑M2/53‑251 (MQ=255) aggcgcaagaaaagggcgacatggaacaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGTTGGAGCGGATAAACCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCg > 1:46086‑M2/51‑251 (MQ=255) caagaaaagggcgacatggaacaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGTTGGAGCGGATAAACCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGtt > 1:64205‑M2/46‑249 (MQ=255) cgacatggaacaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGTTGGAGCGGATAAACCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAAt > 2:264170‑M2/35‑142 (MQ=255) cgaaatgaaaaaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGTTGGAGCGGAAAACCCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAAt < 1:264170‑M2/108‑1 (MQ=255) gaacaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGTTGGAGCGGATAAACCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATCAtcgct > 2:429553‑M2/28‑137 (MQ=255) acaaatcattaatgtaaacaggctaGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGTTGGAGCGGATAAACCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAgg > 1:356546‑M2/26‑249 (MQ=255) ataatgtaaacgggataGTGAGGGGCGGCAAACAGCTGTTTTATGTCCTGCCAGTGGGGGCGGAAAAACCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTgc < 2:2898‑M2/234‑1 (MQ=255) aaattaaaacaggctaGTTGGCGGCGGCAATCAGCTGGTTTGGTTCCGGCAAGTTGGGGCGGATAACCCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTgc < 1:106171‑M2/234‑1 (MQ=255) ctaGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGTTGGAGCGGATAAACCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGACTGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGCTACCAGGAGTAACTTACGCCCCGCGGGCAGc > 2:330931‑M2/4‑251 (MQ=255) gTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGTTGGAGCGGATAAACCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGGATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCcgc > 2:299800/1‑251 (MQ=255) | ATGATGTAGCTGGAGTTATACCAGTCGGCAGATTCCGGTACGTCGGTTTGCTCGCCCCAGGTCATCGGCGAGGCGGGCGGCAGGTCGCAATACCAGTCGTAGAAACTTAAACAGGTGCCGCCAAGCAGCGACAGATAACGCGTTCCGGCGGCGTAAGAAACCATCGACATCGCCGGGATCGGCGAGAAACCGGCAACGCGATCCGGGCCGTAGGTTTTGATGGTCCAGACGTTAGCGGCGGCAATCAGCTGGTTTAGTTCCTGCCAGTTGGAGCGGATAAACCCGCCGCGCCCACGCACTTGTTTGTAGCTCAGGCACTTTTGCGGATCGTTCATAATCGATGCCCACGCCAGTACCGGATCGCTGTGTTGCTTGAGGGCTTCGCGCCACAGTTCAATCAGTCGTTTACGAATGAGCGGGTATTTCAGGCGGTTAGCGCTGTAAAGATACCAGGAGTAACTTGCGCCACGCGGGCAGCCGC > NC_000913/1541839‑1542319 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |