| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,520,673 | Δ21,396 bp | [mcbR]–[narZ] | 17 genes [mcbR], yncD, yncE, ansP, yncG, yncH, ydcD, yncO, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, [narZ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1520673 | 1542068 | 21396 | 29 [0] | [0] 30 | [mcbR]–[narZ] | [mcbR],yncD,yncE,ansP,yncG,yncH,ydcD,yncO,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,[narZ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1520672 | 0 (0.000) | 29 (0.440) | 27/478 | 0.7 | 100% | coding (411/666 nt) | mcbR | DNA‑binding transcriptional dual regulator McbR |
| ? | NC_000913 | 1542069 = | 0 (0.000) | coding (522/3741 nt) | narZ | nitrate reductase Z subunit alpha | |||||
TGAATGCGCTTTCTGTCGCACCTGCACAAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGACCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCATCCTGTGTGAGATGATTGAGCAACTGTGGGTCAGGATGGGGCCTGGTTTACATTATCTCTATGAAGCGATTAATCCAGCGGAATTACGGGAGCATATAGAAAACTATCATCTGTTACTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAA > NC_000913/1520443‑1520920 | ggaATGCGCTTTGTGTCGCACCGGCACAAGCNGTGACAGTTCCGGAAGTGGGGAAAGGACAATTAGACGTAATCAAGCTGATCCGCTACGAACTGGAATGAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGACCTTGCGGAACTCCAGGAATTGCTCGAGAAATGACAGCAGGCGCAAGAAAAGGGCGACATGGAGCAAAACATTAATGTAGACAGGCTAggtagcggcggcaatcagctg < 2:218409‑M1/250‑22 (MQ=255) aTGCGCTTTCTGTCGCACCTGCACAAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTCCGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGACCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTAgttagcggcggcaatcagctggtt < 1:58347‑M1/251‑25 (MQ=255) tGTCGCACCTGCACAAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGACCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTAgttagcggcggcaatcagctggtttagttcctgc > 1:180799‑M1/1‑217 (MQ=255) cacaAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGACCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTAgttagcggcggcaatcagctggtttagttcctgccagttggagcg < 1:244423‑M1/251‑46 (MQ=255) acaAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGACCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTAgttagcggcggcaatcagctggtttagttcctgccagttggagcgg < 2:156199‑M1/251‑47 (MQ=255) ttACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGACCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTAgttagcggcggcaatcagctggtttagttcctgccagttggagcggataaacc < 1:447365‑M1/250‑54 (MQ=255) gTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACACCGCAAGACCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAAAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTAgttagcggcggcaatcagctggtttagttcctgccagatggagcggataaaaccgccgc > 1:445673‑M1/1‑192 (MQ=255) gccgGAAGAGTGGAAACGTCAATTAGGCGAAATCAATCGGACCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAACCCGCTCCCCGCAAGACCGTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTAgttagcggcggcagtcagctggtttagttcctgccagttggagcggataaacccgccgcgc < 2:136027‑M1/250‑62 (MQ=255) gAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGACCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTAgttagcggcggaaatcagccggtttagttcctgcccgttggggcggataaaccagccgcgcccac > 2:489759‑M1/1‑186 (MQ=255) tAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGACCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCGAgttagcggcggcaatcagctggcttagttcctgccagttggaccgggtaaacccgccgcgcccacgcacttgtttgtagctc > 2:82786‑M1/1‑167 (MQ=255) aatcGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGACCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTAgttagcggcggcaatcagctggtttagttcctgccagttggagcggataaacccgccgcgcccacgcacttgtttgtagctcaggcacttttgcg > 1:50526‑M1/1‑156 (MQ=255) tGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGACCTTGCGGAACTCCAGGCATTGCTCGAGAAATTACAGCAGGCGCACGAAAAGGGCGACATGGAACAAATCATTAATGTAACCAGGCTAgttagcggcggcaatcagctggtttaattcctgccaggtggagcggagaaacccgccgcgcccacgcacttgtttgtagatcaggaccctttgcgactcgttcctaatcgatgcccacgcc > 2:167520‑M1/1‑128 (MQ=255) ctGGCTGTTGAAAACCTCCCCCCGCAAGCCCTTGCGGAACTCCAGGAATTGCTAGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTAgttagcggcggcaatcagctggtttagttcctgccagctggagcgggtaaacccgccgcgcccacgcacttgtttgacgctcaggcacttttgcggaacgttcataatcgatgcccacgccagtaccggctagc > 2:330454‑M1/1‑117 (MQ=255) gTTGAAAACCTCACCCCGCAAGACCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTAgttagcggcggcaatcagctggtttagttcctgccagttggagcggataaacccgccgcgcccacgcacttgtttgtagctcaggcacttttgcggatcgttcataatcgatgcccacgccagtaccggatcgctgtgtt > 1:2898‑M1/1‑111 (MQ=255) ccccGCAAGACCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTAgttagcggcggcaatcagctggtttagttcctgccagttggagcggataaacccgccgcgcccacgcacttgtttgtagctcaggcacttttgcggatcgttcatattcgatgcccacgccagtaccggatcgctgggttgcttgagggcttc > 2:450977‑M1/1‑98 (MQ=255) aGACCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTAgttagcggcggcaatcagctgggttagttcctgccagttggagcggataaacccgccgcgcccacgcacttgtttgtagctcaggcacttttgcggatcgttcataatcgatgcccccgccagtaccggatcgctgttttgcttgagggcttcgcgccac > 2:79603‑M1/1‑91 (MQ=255) ccTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTAgttagcggcggcaatcagctggtttagttcctgccagttggagcggataaacccgccgcgcccacgcacttgtttgtagctcaggcacttttgcggatcgttcataatcgatgcccacgccagtaccggatcgctgtgttgcttgagggcttcgcgccacagt > 1:453913‑M1/1‑88 (MQ=255) ttGCTCGAGAAATTACAGCAGGCGCCAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTAgttagcggcggcaatcagctggtttagttcctgccagttggagcggataaacccgccgcgcccacgcacttgtttgtagctcaggcacttttgcggatcgttcataatcgatgcccacgccagtaccggatcgctgtgttgcttgagggcttcgcgccacagttcaatcagtcgtttacga > 1:152604‑M1/1‑69 (MQ=255) gaAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTAgttagcggcggcaatcagctggtttagttcctgccagttggagcggataaacccgccgcgcccacgcacttgtttgtagctcaggcacttttgcggatcgttcataatcgatgcccacgccagtaccggatcgctgtgttgcttgagggcttcgcgccacagttcactcagtcgtttacgaatgagcggg > 2:443308‑M1/1‑61 (MQ=255) gcagGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTAgttagcggcggcaatcagctggtttagttcctgccagttggagcggataaacccgccgcgcccacgcacttgtttgtagctcaggcacttttgcggatcgttcataatcgatgcccacgccagtaccggatcgctgtgttgcttgagggcttcgcgccacagttcaatcagtcgtttacgaatgagcgggtatttcagg > 2:339791‑M1/1‑52 (MQ=255) agGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTAgttagcggcggcaatcagctggtttagttcctgccagttggagcggataaacccgccgcgcccacgcacttgtttgtagctcaggcacttttgcggatcgttcataatcgatgcccacgccagtaccggatcgctgtgttgcttgagggcttcgcgccacagttcaatcagtcgtttacgaatgagcgggtatttcaggcg > 1:46086‑M1/1‑50 (MQ=255) cAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTAgttagcggcggcaatcagctggtttagttcctgccagttggagcggataaacccgccgcgcccacgcacttgtttgtagctcaggcacttttgcggatcgttcataatcgatgcccacgccagtaccggatcgctgtgttgcttgagggcttcgcgccacagttcaatcagtcgtttacgaatgagcgggtatttcaggcggtt > 1:64205‑M1/1‑45 (MQ=255) cgaaatgaaaaaaatcattaatgtaAACAGGCTAgttagcggcggcaatcagctggtttagttcctgccagttggagcggaaaaccccgccgcgcccacgcacttgtttgtagctcaggcacttttgcggatcgttcataat < 1:264170‑M1/131‑109 (MQ=255) cGACATGGAACAAATCATTAATGTAAACAGGCTAgttagcggcggcaatcagctggtttagttcctgccagttggagcggataaacccgccgcgcccacgcacttgtttgtagctcaggcacttttgcggatcgttcataat > 2:264170‑M1/1‑34 (MQ=255) gAACAAATCATTAATGTAAACAGGCTAgttagcggcggcaatcagctggtttagttcctgccagttggagcggataaacccgccgcgcccacgcacttgtttgtagctcaggcacttttgcggatcgttcatcatcgct > 2:429553‑M1/1‑27 (MQ=255) aCAAATCATTAATGTAAACAGGCTAgttagcggcggcaatcagctggtttagttcctgccagttggagcggataaacccgccgcgcccacgcacttgtttgtagctcaggcacttttgcggatcgttcataatcgatgcccacgccagtaccggatcgctgtgttgcttgagggcttcgcgccacagttcaatcagtcgtttacgaatgagcgggtatttcaggcggttagcgctgtaaagataccagg > 1:356546‑M1/1‑25 (MQ=255) ataATGTAAACGGGATAgtgaggggcggcaaacagctgttttatgtcctgccagtgggggcggaaaaacccgccgcgcccacgcacttgtttgtagctcaggcacttttgcggatcgttcataatcgatgcccacgccagtaccggatcgctgtgttgcttgagggcttcgcgccacagttcaatcagtcgtttacgaatgagcgggtatttcaggcggttagcgctgtaaagataccaggagtaacttgc < 2:2898‑M1/250‑235 (MQ=255) aaattaaaacaggctAgttggcggcggcaatcagctggtttggttccggcaagttggggcggataaccccgccgcgcccacgcacttgtttgtagctcaggcacttttgcggatcgttcataatcgatgcccacgccagtaccggatcgctgtgttgcttgagggcttcgcgccacagttcaatcagtcgtttacgaatgagcgggtatttcaggcggttagcgctgtaaagataccaggagtaacttgc < 1:106171‑M1/244‑235 (MQ=255) cTAgttagcggcggcaatcagctggtttagttcctgccagttggagcggataaacccgccgcgcccacgcacttgtttgtagctcaggcacttttgcggatcgttcataatcgatgcccacgccagtaccggatcgctgtgttgcttgagggcttcgcgccacagttcaatcagtcgtttacgactgagcgggtatttcaggcggttagcgctgtaaagctaccaggagtaacttacgccccgcgggcagc > 2:330931‑M1/1‑3 (MQ=255) | TGAATGCGCTTTCTGTCGCACCTGCACAAGCATTTACAGTTCCGGAAGTGGGGAAACGTCAATTAGACGAAATCAATCGGATCCGCTACGAACTGGAATTAATGGCAGTTGCTCTGGCTGTTGAAAACCTCACCCCGCAAGACCTTGCGGAACTCCAGGAATTGCTCGAGAAATTACAGCAGGCGCAAGAAAAGGGCGACATGGAACAAATCATTAATGTAAACAGGCTATTTCGCTTAGCGATTTATCATCGCTCAAATATGCCCATCCTGTGTGAGATGATTGAGCAACTGTGGGTCAGGATGGGGCCTGGTTTACATTATCTCTATGAAGCGATTAATCCAGCGGAATTACGGGAGCATATAGAAAACTATCATCTGTTACTCGCTGCGTTAAAAGCAAAAGACAAAGAGGGATGCAGACATTGTCTTGCTGAAATTATGCAACAAAATATTGCTATTTTATACCAGCAATACAA > NC_000913/1520443‑1520920 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |