Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,465,392	Δ16,810 bp		[ydbA]–[ynbD]	[ydbA], insD2, insC2, ydbA, insI2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, [ynbD]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1465392	1482201	16810	26 [0]	[0] 26	[ydbA]–[ynbD]	[ydbA],insD2,insC2,ydbA,insI2,ydbA,pdxI,ydbD,ynbA,ynbB,ynbC,[ynbD]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1465391	0 (0.000)	26 (0.400)	25/478	0.9	100%	intergenic (‑161/‑1)	ynbG/ydbA	uncharacterized protein YnbG/putative outer membrane protein, N‑terminal fragment
	?	NC_000913	1482202 =	0 (0.000)					intergenic (+1/+53)	ynbD/azoR	phosphatase domain‑containing protein YnbD/FMN dependent NADH:quinone oxidoreductase

GAAGAGGGGGAGCTCCGACAGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGTGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTCGAGCCAGACGCCCGCAGATTGTGCTGACAGACGAGCACAAAGCGATGCTGAGATTATGGGAAAACAGGTAAGTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTTCGCTGCCATTTCCGGACCGTATGCGATCCCTTCGGCGAAGACAAATTTCACATCGGTAATGCCGATAAAGCCGAGGAACGTGGACAGATACGGCGTCACCAGGTCCGTTGGTCCATCTTTGTGGATCCCGCCGCGGCT  >  NC_000913/1481959‑1482443                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                  ttttttcatcatataattatttataatgagaatgtggttttaatttgtaatttatattatatacacaatttatatatttcatggtctttttttattcacctgaattataattgtgaattataggaaagtatgtttgattagataataatctactggcaatattggatgtcttctatgttttaaataactaattggtcgggttagtgcatccggctttctttatattcgccagaaggatttattGTGGATTg                                                                                                                                                                                                                                            >  1:91005‑M2/244‑251 (MQ=255)          catataattatttataatgagaatgtggttntaatttgtaatttatattatatacacaatttatatatttcatggtctttttttattcacctgaattataattgtgaattataggaaagtatgtttgattagataataatctactggcaatattggatgtcttctatgttttaaataactaattggtcgggttagtgcatccggctttctttatattcgccagaaggatttattGTGGATTGAGATGTgg                                                                                                                                                                                                                                    <  2:219754‑M2/16‑1 (MQ=255)             ataattatttataatgagaatgtggttttaatttgtaatttatattatatacacaatttatatatttcatggtctttttttattcacctgaagtataattgtgaattataggaaagtatgtttgattagataataatctactggcaatattggatgtcttctaggttttaaataactaattggtcgggttagtgcatccggctttctgtatattcgccagaaggatttattGTGGGTTGAGATGTGGACt                                                                                                                                                                                                                                 <  2:61963‑M2/19‑1 (MQ=255)                                  gtggttttaatttgtaatttatattatatacacaatttatatatttcatggtctttttttattcacctgaattataattgtgaattataggaaagtatgtttgattagataataatctactggcaatattggatgtcttctatgttttaaataactaattggtcgggttagtgcatccggctttctttatattcgccagaaggatttattGTGGATTGAGATGTGGACTGAATATCTACAGTCCtcatca                                                                                                                                                                                                            <  2:31841‑M2/40‑1 (MQ=255)                                                      atattatatacacaatttatatatttcatggtctttttttattcacctgaattataattgtgaattataggaaagtatgtttgattagataataatctactggcaatattgtatgtcttctatgttttaaataactaattggtcgggttagtgcatccggctttctttatattcgccagaaggatttattGTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCa                                                                                                                                                                                        <  1:466726‑M2/60‑1 (MQ=255)                                                         ttatatacacaatttatatatttcatggtctttttttattcacctgaattataattgtgaattataggaaagtatgtttgattagataataatctactggcaatattggatgtcttctatgttttaaataactaattggtcgggttagtgcatccggctttctttatattcgccagaaggatttattGTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGaa                                                                                                                                                                                     >  1:417167‑M2/188‑250 (MQ=255)                                                                                catggtctttttttattcacctgaattataattgtgaattataggaaagtatgttttattagataataatctactggcaatattggatgtcttctatgttttaaataactaattggtcgggttagtgcatccggcttgcttgatattcgccagaagtatttattGTGTATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCttt                                                                                                                                                              <  1:227336‑M2/86‑1 (MQ=255)                                                                                   ggtctttttttattcacctgaattataattgtgaattataggaaagtatgtttgattagataataatctactggcaatattggatgtcttctatgttttaaataactaattggtcgggttagtgcatccggctttctttatattcgccagaaggatttattGTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGc                                                                                                                                                           <  1:91862‑M2/89‑1 (MQ=255)                                                                                      ctttttttattcacctgaattataattgtgaattataggaaagtatgtttgattagataatactctactggcaatattggatgtcttctatgttttaaataactaattggtcgggttagtgcatccggctttctttatattcgccagaaggatttattGTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTc                                                                                                                                                        >  2:429530‑M2/159‑250 (MQ=255)                                                                                              attcacctgaattataattgtgaattataggaaagtatgtttgattagataataatctactggcaatattggatgtcttctatgttttaaataactaattggtcgggttagtgcatccggctttctttatattcgccagaaggatttattGTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGc                                                                                                                                               <  2:285913‑M2/101‑1 (MQ=255)                                                                                                 cacctgaattataattgtgaattataggaaagtatgtttgattagataataatctactggcaatattggatgtcttctatgttttaaataactaattggtcgggttagtgcatccggctttctttatattcgccagaaggatttattGTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCttt                                                                                                                                            <  1:198980‑M2/104‑1 (MQ=255)                                                                                                      gaattataattgtgaattataggaaagtatgtttgattagataataatctactggcaatattggatgtcttctatgttttaaataactaattgggcgggttagtgcatccggctttctttatattcgccagaaggatttattGTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTTCGCt                                                                                                                                        <  2:38373‑M2/108‑1 (MQ=255)                                                                                                           ataattgtgaattataggaaagtatgtttgattagataataatctactggcaatattggatgtcttctatgttttaaataactaattgggcgggttagtgcatccggctttctttatattcgccagaaggatttattGTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTTCGCTGCCAt                                                                                                                                   <  2:324454‑M2/113‑1 (MQ=255)                                                                                                                 gtgaattataggaaagtatgtttgattagataataatctactggcaatattggatgtcttctatgttttaaataactaattggtcgggttagtgcatccggctttctttatattcgccagaaggatttattGTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTTCGCTGCCATTTCCGGa                                                                                                                            <  1:138310‑M2/120‑1 (MQ=255)                                                                                                                  ggaattataggaaagtatgtttgattagataataatctactggcaatatgggatgtcttctatgttttaaataactaattggtcgggttagtgcatccggctttcttgatattcgccagaaggatttattGTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACACTGCTGTCGATGGCTGCTTTTGCGGCAGACTGTGCTTTCGCTGCCATTTCCGGAc                                                                                                                           <  2:101620‑M2/121‑1 (MQ=255)                                                                                                                                                  taatctactggcaatattggatgtcttctatgttttaaataactaattggtcgggttagtgcatccggctttctttatattcgccagaaggatttattGTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTTCGCTGCCATTTCCGGACCGTATGCGATCCCTTCGGCGAAGACAAATTTc                                                                                           >  1:457758‑M2/99‑251 (MQ=255)                                                                                                                                                                             ctatgttttaaataactaattggtcgggttagtgcatccggctttctttatattcgccagaaggatttattGTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTTCGCTGCCATTTCCGGACCGTATGCGATCCCTTCGGCGAAGACAAATTTCACATCGGTAATGCCGATAAAGCCGAgg                                                                >  1:101904‑M2/72‑251 (MQ=255)                                                                                                                                                                                                      gggttagtgcatcaggctttctttatattcgccagaaggatttattGTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTGCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGATTTCGCTGCCATTTCCGGACCGTATGCGATCCCTTCGGCGCAGACAAATTTCACATCGGTAATGCCGATAAAGCAGAGGATCGTGGCAAGATACGgcgtccgcc                                       >  2:459363‑M2/47‑247 (MQ=255)                                                                                                                                                                                                           agtgcatccggctttctttatattcgccagaaggatttattGTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTTCGCTGCCATTTCCGGACCGTATGCGATCCCTTCGGCGAAGACAAATTTCACATCgg                                                                                    <  1:477707‑M2/160‑1 (MQ=255)                                                                                                                                                                                                           agtgcatccggctttctttatattcgccagaaggatttattGTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTTCGCTGCCATTTCCGGACCGTATGCGATCCCTTCGGCGAAGACAAATTTCACATCgg                                                                                    >  2:477707‑M2/42‑201 (MQ=255)                                                                                                                                                                                                                                attcgccagaaggatttattGTGGATTGAGATGTGGAATGAATATCTAAAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTTCGCTGCCATTTCCGGACCGTATGCGATCCCTTCGGCGAAGACAAATTTCACATCGGTAATGCCGATAAAGCCGAGGCACTTGGACAGATACGGCGTCACCAGGGCCGTTGGTCCaactttgtcgctc             >  2:459818‑M2/21‑246 (MQ=255)                                                                                                                                                                                                                                    gccagaaggatttcttGTGGATTGAGATGTGGACTGAATCTATACAGTCCACATCAAGAACGTGTCCGGGTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTTCGCTGCCATTTCCGGAACGTCTGCGATCCCTTCGGCGAAGACACATTTCACATCGGTAATGCCGATAACGCCGAGGAACGTGGACAGATACGGAGCGACCAGGTCCGTTGGTGCCTCTTTGTGGATCccgc         >  2:488664‑M2/17‑251 (MQ=255)                                                                                                                                                                                                                                    gccagaaggatttattGTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTTCGCTGCCATTTCCGGACCGTATGCGATCCCTTCGGCGAAGACAAATTTCACATCGGTAATGCCGATAAAGCCGAGGAACGTGGACAGATACGGCGTCACCAGGTCCGTTGGTCCATCTTTGTGGATCccgc         >  2:39202‑M2/17‑251 (MQ=255)                                                                                                                                                                                                                                      cagaaggatttattGTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGCAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTTCGCTGCCATTTCCGGACCGTATGCGATCCCTTCGGCGAAGACAAATTTCACATCGGTAATGCAGATAAAGCCGAGGAACGTGGACAGATACGGCGTCGCCAGGTCCGTTGGTACATCTTTGTGGATCcagccg       >  2:438637‑M2/15‑251 (MQ=255)                                                                                                                                                                                                                                       agaaggatttattGTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTTCGCTGCCATTTCCGGACCGTATGCGATCCCTTCGGCGAAGACAAATTTCACATCGGTAATGCCGATAAAGCCGAGGAACGTGGACAGATACGGCGTCACCAGGTCCGTTGGTCCATCTTTGTGGATCCcgccgc      >  1:102345‑M2/14‑251 (MQ=255)                                                                                                                                                                                                                                           ggatttattGTTGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACAGTGTCCGGTTATGAAGAAACAATGCTGTTGATGGCTGCTTTTGCGTCAGACTGTGCTTCCGCGGCCATTTCCGGACCGTATGCGATCCCTTCGGCGAAGACAAATTTCACATCGGTAATGCCGATAAAGCCGAGGAACGTGGACAGATACGGCGTCACCAGGTCCGTTGGTCCATCTTTGTGGATCCCGCCGCGGCt  <  1:488664‑M2/242‑1 (MQ=255)                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                  GAAGAGGGGGAGCTCCGACAGGCCGTGGCGATGCTGGAAACATTACGCGAAGAGCAAGGCAGCGTTCTGGTCCATTGTGCATTGGGATTATCGCGCAGTGCGCTGGTGGTGGCGGCATGGTTGTTATGTTACGGACACTGTAAAACCGTTAATGAAGCGATTAGCTATATTCGAGCCAGACGCCCGCAGATTGTGCTGACAGACGAGCACAAAGCGATGCTGAGATTATGGGAAAACAGGTAAGTGGATTGAGATGTGGACTGAATATCTACAGTCCACATCAAGACCGTGTCCGGTTATGCAGAAACAATGCTGTCGATGGCTGCTTTTGCGTCAGACTGTGCTTTCGCTGCCATTTCCGGACCGTATGCGATCCCTTCGGCGAAGACAAATTTCACATCGGTAATGCCGATAAAGCCGAGGAACGTGGACAGATACGGCGTCACCAGGTCCGTTGGTCCATCTTTGTGGATCCCGCCGCGGCT  >  NC_000913/1481959‑1482443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.