| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,591 | Δ24,234 bp | [yghD]–yghT | 20 genes [yghD], yghE, yqhJ, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH9, yghQ, yghR, yghS, yghT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110591 | 3134824 | 24234 | 37 [0] | [0] 36 | [yghD]–yghT | [yghD],yghE,yqhJ,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH9,yghQ,yghR,yghS,yghT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110590 | 0 (0.000) | 36 (0.630) | 34/486 | 0.5 | 100% | coding (537/537 nt) | yghD | putative type II secretion system M‑type protein YghD |
| ? | NC_000913 | 3134825 = | 0 (0.000) | intergenic (+2/+47) | yghT/pitB | putative ATP‑binding protein YghT/metal phosphate:H(+) symporter PitB | |||||
GCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCACAGGTTCTATCCAGACCTGAATATTCTCCCCACGATCGGCTATCCGCCTGATGACCACCGAGTGCGCGGAAGCACTGTCACTGATGACCCGCGATACCTGCGCAGGCGTTGT > NC_000913/3110340‑3110838 | gCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACtt < 2:359637/251‑1 (MQ=255) cAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATATCCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaa < 2:84498‑M1/250‑6 (MQ=255) ggTTTAATGCGCCCCTGTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGTGGAATTACTCTCGCCACGTTAACGAGAGTAATTTGATTGATATTAATCTCCTGATACGTcaaaaatg < 2:47395‑M1/251‑9 (MQ=255) tGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTTTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCTCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaataatggaaatgcccgatcgcc < 2:331354‑M1/250‑25 (MQ=255) tCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGCTTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACACGGCGGGTTTTTGCTTTTGGATCTGCCAATAACCCTCACGAAAAAAATTAGCTTATAACGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcatt > 2:76840‑M1/1‑214 (MQ=255) aaTCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGACCACAAGGCGGGTTTTTTCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATCTTATTGATATTAATCTCCTGATGCTTcaaaaatggaaatgcccggtcggcaggaacgggcattttcaggaaggttaaatcaactgcaa < 1:84684‑M1/251‑63 (MQ=255) gATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccac > 1:138751‑M1/1‑169 (MQ=255) cGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaa < 2:518905‑M1/251‑88 (MQ=255) ccacTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTCCCTTTGGATCTGACAATAACCTTCACGAACAAACTCAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTACTTTTATTGATATTAATCTCCTGATACTTcaaaaatggaactgcccgatcgccaggaccgggcattttcaggaaggttaaatccactgcaatgctatccagtcaagcccccccgaaagaaaacttacc > 1:212473‑M1/1‑152 (MQ=255) gCTTTTGGATCTGACCATAACCTTCACGCAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggtt > 2:27773‑M1/1‑113 (MQ=255) ttGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTAGAAAGTCTGGGGGAATTACTCGCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaatggcctccggtaaagtaaatacccacgccatcaggatgctggttacc < 1:76840‑M1/250‑142 (MQ=255) aTCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgtttt > 1:378295‑M1/1‑105 (MQ=255) aTAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgt > 2:11433‑M1/1‑97 (MQ=255) aaCCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaac > 1:136669‑M1/1‑95 (MQ=255) aaCCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaac > 1:335286‑M1/1‑95 (MQ=255) taAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtacagtacatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaacatcgtcc > 2:50116‑M1/1‑70 (MQ=255) aaaGTCTGGGGGAATTACTCTCGCCAAGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaaggctatccagtacagcccaccagaaagaaaaattgccgccggtaacgtaaatacccacgccatcaggctgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccc > 1:152693‑M1/1‑69 (MQ=255) aGTCTGGGGAAATTACTCTCGCCACGTTAAAGAGAGCACTTTTATTGATCTTAATCTCCTGATACTTcaacaatggaaatgcccgatcgccaggaccgggcattttcaggcaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgcagccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctg > 2:244738‑M1/1‑67 (MQ=255) cTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgca > 1:8196‑M1/1‑64 (MQ=255) tGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaac > 1:361439‑M1/1‑63 (MQ=255) gggggAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccccgcaact > 2:227713‑M1/1‑62 (MQ=255) ggggAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtc > 1:94754‑M1/1‑61 (MQ=255) tACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacg > 1:203318‑M1/1‑54 (MQ=255) aCTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacg > 1:354720‑M1/1‑53 (MQ=255) cACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtg > 2:403481‑M1/1‑45 (MQ=255) ccgTTAACGAGAGTAATTTTATTGATATGAATGTCCTGATACTTcaaaaatggaaaggcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaagtgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcggcccggcaactgcagacgagaggacgtgg < 2:134981‑M1/250‑208 (MQ=255) gTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgc < 1:22080‑M1/175‑134 (MQ=255) gTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgc > 2:22080‑M1/1‑42 (MQ=255) ataACGGGAGTAATTTTATTGATAATAATCTCCTGATACTTcaaaaatggaaatgcccgatagcaaggaccgggcattttcaggaaggttaaatcaactgcattgctatccagtacagcccaccagaaagaaaatttgccgccggtaaagtaaagacccacgccagcagtatgctggttgccggtttacgctgtaacccacggccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtg < 2:212473‑M1/248‑209 (MQ=255) gagaGTACTTCTATAGATATTAATCTACTGATACTTcaaaaatggaaatgcccgatcgccaggcccgggcattttcgggaaggttaactcacctgcaatgctctccagtacagcccacccgaaagaacaattgccgccggtaaagtaaatccccacgccatcaggatgctggttaccgttttacgctgtaaccccccgccgtcccccaccatcgtccctgcaactgcagacgagaggacgtgcgttgtgg > 2:192876‑M1/1‑36 (MQ=255) ttATTGATATTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaacggcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtgttgtggagacgggcat < 2:378295‑M1/250‑225 (MQ=255) atatTAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccagacccgggcattttcaggaaggttaaatccactgcaatgctatccagtacagcccaccagaaagaaaacttgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtcc > 1:224368‑M1/1‑20 (MQ=255) agattaATCTCCTGATTCTTcaaaaatgaaaaggcccgatcgccaggaccgggcattttcaggaaggttaaatcaacggcaatgctctccagtacagccctccagaaagaaaaattgccgccggtaaattaaatacccacgccagcaggatgctggttaccgttttacgctgtaacccaccgccgtcc < 2:224368‑M1/186‑169 (MQ=255) ttAATCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagcggacgtgtgttgtggagacgggcatcccaatata > 1:329879‑M1/1‑17 (MQ=255) aaTCTCCTGATACTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtgttgtggagacgggcatcccaatataact > 1:448774‑M1/1‑15 (MQ=255) cTGATACTTcaaaaatggcaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggtaccgttttacgctgtaacccaccgccgtccaccaccatcgtccatgcaactgcagacgagaggacgtgtgttgtggcgacgggcatcccaatataactggca > 2:467765‑M1/1‑9 (MQ=255) cTTcaaaaatggaaatgcccgatcgccaggaccgggcattttcaggaaggttaaatcaactgcaatgctatccagtacagcccaccagaaagaaaaattgccgccggtaaagtaaatacccacgccatcaggatgctggttaccgttttacgctgtaacccaccgccgtccaccaccatcgtccctgcaactgcagacgagaggacgtgtgttgtggagacgggcatcccaatataactggcaagaccgat > 1:13373‑M1/1‑3 (MQ=255) | GCGAATCAGGTTTAATGCGCCCCGTTGCCCGGATAGCTCAGTCGGTAGAGCAGGGGATTGAAAATCCCCGTGTCCTTGGTTCGATTCCGAGTCCGGGCACCACTAATTCTTAAGAACCCGCCCACAAGGCGGGTTTTTGCTTTTGGATCTGACAATAACCTTCACGAAAAAAATTAGCTTATAAAGTCTGGGGGAATTACTCTCGCCACGTTAACGAGAGTAATTTTATTGATATTAATCTCCTGATACTTTACCCCCGTCCAAACTCCAGCCGCTGCACATTCACCATCCCAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATATTTTTCATCCAGTGCGTTTAACCATTTCAGCAGGTCATTAAACACCACAGGTTCTATCCAGACCTGAATATTCTCCCCACGATCGGCTATCCGCCTGATGACCACCGAGTGCGCGGAAGCACTGTCACTGATGACCCGCGATACCTGCGCAGGCGTTGT > NC_000913/3110340‑3110838 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |