| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,591 | Δ24,234 bp | [yghD]–yghT | 20 genes [yghD], yghE, yqhJ, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH9, yghQ, yghR, yghS, yghT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110591 | 3134824 | 24234 | 37 [0] | [0] 36 | [yghD]–yghT | [yghD],yghE,yqhJ,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH9,yghQ,yghR,yghS,yghT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110590 | 0 (0.000) | 36 (0.630) | 34/486 | 0.5 | 100% | coding (537/537 nt) | yghD | putative type II secretion system M‑type protein YghD |
| ? | NC_000913 | 3134825 = | 0 (0.000) | intergenic (+2/+47) | yghT/pitB | putative ATP‑binding protein YghT/metal phosphate:H(+) symporter PitB | |||||
TCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGACCTTGAAGTTGCCTGTGCACGTAAACCCGACCATAAACGGGAATCGCTGGCGAGGAAGATTGCCATAACGCCACAGTTAACCTTTGGTGGTGCACAACTGGTTGATATCGATGCCAATCAGCCACTGGAACAGGTGTTGGTTGATGCAGAAAAAGCGATTACGGATTTTATGACCGCGCGTGGTTATCACTAGTCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACGTGTGTTGTGGAGACGGGCATCCCAATATAACTGGCAAGACCGAT > NC_000913/3134580‑3135072 | caggtttaatgcgccccgttgcccggatagctcagtcggtagagcaggggattgaaaatccccgtgtccttggttcgattccgagtccgggcaccactaattcttaagaacccgcccacaaggcgggtttttgcttttggatctgacaatatccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCaaaa < 2:84498‑M2/5‑1 (MQ=255) ggtttaatgcgcccctgtgcccggatagctcagtcggtagagcaggggattgaaaatccccgtgtccttggttcgattccgagtccgggcaccactaattcttaagaacccgcccacaaggcgggtttttgcttttggatctgacaataaccttcacgaaaaaaattagcttataaagtctggtggaattactctcgccacgttaacgagagtaatttgattgatattaatctcctgatacgtCAAAAATg < 2:47395‑M2/8‑1 (MQ=255) tgcccggatagctcagtcggtagagcaggggattgaaaatccccgtttccttggttcgattccgagtccgggcaccactaattcttaagaaccctcccacaaggcgggtttttgcttttggatctgacaataaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAATAATGGAAATGCCCGATCGcc < 2:331354‑M2/24‑1 (MQ=255) tcagtcggtagagcaggggattgaaaatccccgtgtccttggttcgcttccgagtccgggcaccactaattcttaagaacccgcccacacggcgggtttttgcttttggatctgccaataaccctcacgaaaaaaattagcttataacgtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCAtt > 2:76840‑M2/215‑251 (MQ=255) aatccccgtgtccttggttcgattccgagtccgggcaccactaattcttaagaacccgaccacaaggcgggttttttcttttggatctgacaataaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgagagtaatcttattgatattaatctcctgatgcttCAAAAATGGAAATGCCCGGTCGGCAGGAACGGGCATTTTCAGGAAGGTTAAATCAACTGCaa < 1:84684‑M2/62‑1 (MQ=255) gattccgagtccgggcaccactaattcttaagaacccgcccacaaggcgggtttttgcttttggatctgacaataaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCccac > 1:138751‑M2/170‑251 (MQ=255) cgagtccgggcaccactaattcttaagaacccgcccacaaggcgggtttttgcttttggatctgacaataaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCagaa < 2:518905‑M2/87‑1 (MQ=255) ccactaattcttaagaacccgcccacaaggcgggtttttccctttggatctgacaataaccttcacgaacaaactcagcttataaagtctgggggaattactctcgccacgttaacgagagtacttttattgatattaatctcctgatacttCAAAAATGGAACTGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCCACTGCAATGCTATCCAGTCAAGCCCCCCcgaaagaaaacttacc > 1:212473‑M2/153‑245 (MQ=255) gcttttggatctgaccataaccttcacgcaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGtt > 2:27773‑M2/114‑251 (MQ=255) ttggatctgacaataaccttcacgaaaaaaattagcttagaaagtctgggggaattactcgcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATGGCCTCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTAcc < 1:76840‑M2/141‑1 (MQ=255) atctgacaataaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGtttt > 1:378295‑M2/106‑251 (MQ=255) ataaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGt > 2:11433‑M2/98‑250 (MQ=255) aaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAAc > 1:136669‑M2/96‑251 (MQ=255) aaccttcacgaaaaaaattagcttataaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAAc > 1:335286‑M2/96‑251 (MQ=255) taaagtctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTACAGTACATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCAACATCGTcc > 2:50116‑M2/71‑251 (MQ=255) aaagtctgggggaattactctcgccaagttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAAGGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAACGTAAATACCCACGCCATCAGGCTGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTccc > 1:152693‑M2/70‑251 (MQ=255) agtctggggaaattactctcgccacgttaaagagagcacttttattgatcttaatctcctgatacttCAACAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGCAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCAGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTg > 2:244738‑M2/68‑251 (MQ=255) ctgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCa > 1:8196‑M2/65‑250 (MQ=255) tgggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAAc > 1:361439‑M2/64‑251 (MQ=255) gggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCCGCAACt > 2:227713‑M2/63‑251 (MQ=255) ggggaattactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTc > 1:94754‑M2/62‑228 (MQ=255) tactctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACg > 1:203318‑M2/55‑250 (MQ=255) actctcgccacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACg > 1:354720‑M2/54‑249 (MQ=255) cacgttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACgtg > 2:403481‑M2/46‑251 (MQ=255) ccgttaacgagagtaattttattgatatgaatgtcctgatacttCAAAAATGGAAAGGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAAGTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGGCCCGGCAACTGCAGACGAGAGGAcgtgg < 2:134981‑M2/207‑2 (MQ=255) gttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGc > 2:22080‑M2/43‑175 (MQ=255) gttaacgagagtaattttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGc < 1:22080‑M2/133‑1 (MQ=255) ataacgggagtaattttattgataataatctcctgatacttCAAAAATGGAAATGCCCGATAGCAAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCATTGCTATCCAGTACAGCCCACCAGAAAGAAAATTTGCCGCCGGTAAAGTAAAGACCCACGCCAGCAGTATGCTGGTTGCCGGTTTACGCTGTAACCCACGGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACgtgtg < 2:212473‑M2/208‑1 (MQ=255) gagagtacttctatagatattaatctactgatacttCAAAAATGGAAATGCCCGATCGCCAGGCCCGGGCATTTTCGGGAAGGTTAACTCACCTGCAATGCTCTCCAGTACAGCCCACCCGAAAGAACAATTGCCGCCGGTAAAGTAAATCCCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCCCCGCCGTCCCCCACCATCGTCCCTGCAACTGCAGACGAGAGGACGTGCGTTGTgg > 2:192876‑M2/37‑250 (MQ=255) ttattgatattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACGGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACGTGTGTTGTGGAGACGGGCAt < 2:378295‑M2/224‑1 (MQ=255) atattaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGACCCGGGCATTTTCAGGAAGGTTAAATCCACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAACTTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTcc > 1:224368‑M2/21‑188 (MQ=255) agattaatctcctgattcttCAAAAATGAAAAGGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACGGCAATGCTCTCCAGTACAGCCCTCCAGAAAGAAAAATTGCCGCCGGTAAATTAAATACCCACGCCAGCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTcc < 2:224368‑M2/168‑1 (MQ=255) ttaatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGCGGACGTGTGTTGTGGAGACGGGCATCCCAAtata > 1:329879‑M2/18‑250 (MQ=255) aatctcctgatacttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACGTGTGTTGTGGAGACGGGCATCCCAATATAACt > 1:448774‑M2/16‑251 (MQ=255) ctgatacttCAAAAATGGCAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGG‑TACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCATGCAACTGCAGACGAGAGGACGTGTGTTGTGGCGACGGGCATCCCAATATAACTGGCa > 2:467765‑M2/10‑248 (MQ=255) cttCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACGTGTGTTGTGGAGACGGGCATCCCAATATAACTGGCAAGACCGAt > 1:13373‑M2/4‑251 (MQ=255) | TCACTGGATGGCGAGCCATAAGCCTGATCTGGTCATCAAACTCAATGTTGACCTTGAAGTTGCCTGTGCACGTAAACCCGACCATAAACGGGAATCGCTGGCGAGGAAGATTGCCATAACGCCACAGTTAACCTTTGGTGGTGCACAACTGGTTGATATCGATGCCAATCAGCCACTGGAACAGGTGTTGGTTGATGCAGAAAAAGCGATTACGGATTTTATGACCGCGCGTGGTTATCACTAGTCAAAAATGGAAATGCCCGATCGCCAGGACCGGGCATTTTCAGGAAGGTTAAATCAACTGCAATGCTATCCAGTACAGCCCACCAGAAAGAAAAATTGCCGCCGGTAAAGTAAATACCCACGCCATCAGGATGCTGGTTACCGTTTTACGCTGTAACCCACCGCCGTCCACCACCATCGTCCCTGCAACTGCAGACGAGAGGACGTGTGTTGTGGAGACGGGCATCCCAATATAACTGGCAAGACCGAT > NC_000913/3134580‑3135072 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |