New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 263075	0 (0.000)	36 (0.640)	32/484	0.6	100%	intergenic (+129/+253)	thrW/ykfI	tRNA‑Thr/toxin of the YkfI‑YafW toxin‑antitoxin system
	?	NC_000913	388644 =	0 (0.000)					coding (850/852 nt)	tauD	taurine dioxygenase

TACGCGAATTGTTGATGTGAGCGAGAAAGAGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGGCGCTGGCAACCAAATGATATTGCGATTTGGGATAACCGCGTGACCCAGCACTATGCCAATGCCGATTACCTGCCACAGCGACGGATAATGCATCGGGCGACGATCCTTGGGGATAAACCGTTTTATCGGGCGGGGTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCAGAATCTTCTTCTCAGCCAAATCCAGCGCAAAGTAGCTGAAAATCAGATCCGCACCCGCACGCTTAATCGAACCTAAGCTTTCGAGCACGACTTTCTCTTCATCTATAGCACCCGCCAGCGCGGCGAACTTAATC  >  NC_000913/388415‑388894                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                           cgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaattgttacgtaagatcttatcattctcccaccaaaaaattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTccc                                                                                                                                                                                                                                       <  1:428259‑M2/22‑1 (MQ=255) cgttcgtgaacatgtcctttcagggccgatatagctcagttggtagagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaattgttacgtaagatcttatcattctcccaccaaaaaattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTccc                                                                                                                                                                                                                                       >  1:512422‑M2/230‑251 (MQ=255)                                             agagcagcgcattcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaattgttacgtaagatcttatcattctcccaccaaaaaattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcgtatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCAcc                                                                                                                                                                                            <  1:513104‑M2/65‑1 (MQ=255)                                                         tcgtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaattgttacgtaagatcttatcattctcccaccaaaaaattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACa                                                                                                                                                                                <  2:386145‑M2/77‑1 (MQ=255)                                                           gtaatgcgaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaattgttacgtaagatcttatcattctcccaccaaaaaattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGt                                                                                                                                                                             <  1:197315‑M2/80‑1 (MQ=255)                                                                  gaaggtcgtaggttcgactcctattatcggcaccattaaaatcaaattgttacgtaagatcttatcattctcccaccaaaaaattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTcc                                                                                                                                                                      <  2:518373‑M2/87‑1 (MQ=255)                                                                     ggtcgtaggttcgactcctattatcggcaccattaaaatcaaattgttacgtaagatcttatcattctcccaccaaaaaattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTccccc                                                                                                                                                                   <  2:414998‑M2/90‑1 (MQ=255)                                                                           aggttcgactcctattatcggcaccattaaaatcaaattgttacgtaagatcttatcattctcccaccaaaaaattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCt                                                                                                                                                              <  1:131268‑M2/95‑1 (MQ=255)                                                                                     cctattatcggcaccattaaaatcaaattgttacgtaagatcttatcattctcccaccaaaaaattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGGGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGaaa                                                                                                                                                     <  2:265464‑M2/104‑1 (MQ=255)                                                                                          tatcggaacttttaaaaccaaattgttacgtaagatcttatcattatcccaccacacaattctcttaatgtaaaagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCCACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAAtt                                                                                                                                              >  2:497179‑M2/141‑251 (MQ=255)                                                                                                caccattaaaatcaaattgttacgtaagatcttatcattctcccaccaaaaaattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGc                                                                                                                                         >  1:523990‑M2/135‑250 (MQ=255)                                                                                                 accattaaaatcaaattgttacgtaagatcttatcattctcccaccaaaaaattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGc                                                                                                                                         >  1:495801‑M2/134‑249 (MQ=255)                                                                                                       aaaatcaaattgttacgtaagatcgtatcattctcccaccaaaaaattatcttaatgtaacatctggtgtaaggaaattctatcaacgaagatcaatcttatcttctggccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTGGGGGAGAGGGTTAGGGTGAGAGGGCGATCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCCGAAtctt                                                                                                                                 <  1:332244‑M2/124‑1 (MQ=255)                                                                                                             aaattgttacgtaagatcttatcattctcccaccaaaaaattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCTGAATCTTCTtctc                                                                                                                           >  1:82325‑M2/122‑251 (MQ=255)                                                                                                              aattgttacgtaagatcttatcattctcccaccaaaaaattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatatactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTAGACCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCACCTTTCTGAGAGGAACTAAAATAAACGCAGAATCTTCTtctc                                                                                                                           >  1:329270‑M2/121‑250 (MQ=255)                                                                                                               attgttacgtaagatcttatcattctcccaccaaaaaattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCAGAATCTTCTtctc                                                                                                                           >  2:98514‑M2/120‑249 (MQ=255)                                                                                                                     ccgtaagatcttatcattctcccaccaaaaaattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCAGAATCTTCTTCTCACCCAAAt                                                                                                                   >  2:58167‑M2/114‑251 (MQ=255)                                                                                                                          agatcttatcattctcccaccaaaaaattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACCAAATTAACGCAGAATCTTCTTCTCAGCCAAATCCAgc                                                                                                              >  2:289240‑M2/109‑251 (MQ=255)                                                                                                                                tatcattctcccaccaaaaaattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGTCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAATTTAACGCAGAATCTTCTTCTCAGCCAAATCCAGCGCaaa                                                                                                         <  1:354537‑M2/148‑1 (MQ=255)                                                                                                                                tatcattctcccaccaaaaaattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCAGAATCTTCTTCTCAGCCAAATCCAGCGCa                                                                                                           <  2:512422‑M2/146‑1 (MQ=255)                                                                                                                                         cccaccaaaaaattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGTGGTCTTTCACCGTACTTTCAACATGTTAACTCCCCCTTGCTGAGAGGAAACAAAATTAACGCATAATCTTCTTCTCAGCCAAATCCAGCGCAAAGTAGCTg                                                                                                  <  1:497179‑M2/155‑1 (MQ=255)                                                                                                                                               aaaaaattatcttaatgtaacagctggtgtaaggaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCAGAATCTTCTTCTCAGCCAAATCCAGCGCAAAGTAGCTGAAAATCAGa                                                                                         <  1:386665‑M2/164‑1 (MQ=255)                                                                                                                                                  aaattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCAGAATCTTCTTCTCAGCCAAATCCAGCGCAAAGTAGCTGAAAATCAGATcc                                                                                      <  2:22257‑M2/167‑1 (MQ=255)                                                                                                                                                   aattatcttaatgtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCAGAATCTTCTTCTCAGCCAAATCCAGCGCAAAGTAGCTGAAAATCAGATccg                                                                                     <  2:65644‑M2/168‑1 (MQ=255)                                                                                                                                                               gtaacagctggtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCTGAATCTTCTTCTCAGCCAAATCCAGCGCAAAGTAGCTGAAAATCAGATCCGCACCCGCACGCt                                                                         <  2:82325‑M2/180‑1 (MQ=255)                                                                                                                                                                    agctggtgtaagtaaattctatcaacgaagatcaatcttatctactgcacaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCACCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCAGAATCTTCTTCTCAGCCAAATCCAGCGCAAAGTAGCTGAAACTCAGATCCGCACCCGCACGCTTAATc                                                                    >  1:262837‑M2/67‑251 (MQ=255)                                                                                                                                                                         gtgtaagtaaattctctcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCAGAATCTTCTTCTCAGCCAAATCCAGCGCAAAGTAGCTGAAAATCAGATCCGCACCCGCACGCTTAATCGAAcc                                                               >  1:400936‑M2/62‑251 (MQ=255)                                                                                                                                                                         gtgtaagtaaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCAGAATCTTCTTCTCAGCCAAATCCAGCGCAAAGTAGCTGAAAATCAGATCCGCACCCGCACGCTTAATCGAAcc                                                               >  1:177861‑M2/62‑251 (MQ=255)                                                                                                                                                                                 aaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACGGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCAGAATCTTCTTCTCAGCCAAATCCAGCGCAAAGTAGCTGAAAATCAGATCCGCACCCGCACGCTTAATCGAACCTaa                                                            <  2:403190‑M2/193‑1 (MQ=255)                                                                                                                                                                                 aaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCAGAATCTTCTTCTCAGCCAAATCCAGCGCAAAGTAGCTGAAAATCAGATCCGCACCCGCACGCTTAATCGAACCTaa                                                            >  1:403190‑M2/54‑246 (MQ=255)                                                                                                                                                                                 aaattctatcaacgaagatcaatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCAGAATCTTCTTCTCAGCCAAATCCAGCGCAAAGTAGCTGAAAATCAGATCCGCACCCGCACGCTTAATCGAACCTCAGCttt                                                       >  2:202046‑M2/54‑251 (MQ=255)                                                                                                                                                                                        atcaacgaagatccagcttatctactgaccaaaaaggcctgataggTAATACGGGAGGTGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCTCCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGATGAAACAAAATTAACGCAGAATCTTCTGCTCAGCCAATTCCAGCGCAAAGTAGCTGAAAATCAGATCCGCACCCGCACGCTTAAGCTAACCGAAGCTTTCGAGCa                                                 <  2:304424‑M2/204‑1 (MQ=255)                                                                                                                                                                                                    caatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCAGAATCTTCTTCTCAGCCAAATCCAGCGCAAAGTAGCTGAAAATCAGATCCGCACCCGCACGCTTAATCGAACCTAAGCTTTCGAGCACGACTTTCTCtt                                     <  2:177861‑M2/216‑1 (MQ=255)                                                                                                                                                                                                    caatcttatctactgaccaaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCAGAATCTTCTTCTCAGCCAAATCCAGCGCAAAGTAGCTGAAAATCAGATCCGCACCCGCACGCTTAATCGAACCTAAGCTTTCGAGCACGACTTTCTCTTc                                    >  1:36883‑M2/35‑251 (MQ=255)                                                                                                                                                                                                                     caaaaaggcctgataggTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCAGAATCTTCTTCTCAGCCAAATCCAGCGCAAAGTAGCTGAAAATCAGATCCGCACCCGCACGCTTAATCGAACCTAAGCTTTCGAGCACGACTTTCTCTTCATCTATAGCACCCGcc                    >  2:157647‑M2/18‑250 (MQ=255)                                                                                                                                                                                                                      aaaaaggcctgataggTAATACGAGAGTGGAGGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCTTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCAGAATCTTCTTCTCAGCCAAATCCAGCGCAAAGTAGCTGAAAATCAGATCCGCACCCGCACGCTTAATCGAACCTAAGCTTTCGAGCACGACTTTCTCTTCATCTATAGCACCCGCCAg                  <  2:161747‑M2/235‑1 (MQ=255)                                                                                                                                                                                                                                      tAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCAGAATCTTCTTCTCAGCCAAATCCAGCGCAAAGTAGCTGAAAATCAGATCCGCACCCGCACGCTTAATCGAACCTAAGCTTTCGCGCACGACTTTCTCTTCATCTATAGCACCCGCCAGCGCGGCGAACTTAatc  >  1:205688/1‑251 (MQ=255)                                                                                                                                                                                                                                      |                                                                                                                                                                                                                                                           TACGCGAATTGTTGATGTGAGCGAGAAAGAGAGCGAAGCCTTGTTAAGTTTTTTGTTTGCCCATATCACCAAACCGGAGTTTCAGGTGCGCTGGCGCTGGCAACCAAATGATATTGCGATTTGGGATAACCGCGTGACCCAGCACTATGCCAATGCCGATTACCTGCCACAGCGACGGATAATGCATCGGGCGACGATCCTTGGGGATAAACCGTTTTATCGGGCGGGGTAATACGAGAGTGGACGGTCCCCTCGCCCCCTTGGGGAGAGGGTTAGGGTGAGGGGGCGTTCACCGTACTTTCAACAGGTTAACTCCCCCTTTCTGAGAGGAAACAAAATTAACGCAGAATCTTCTTCTCAGCCAAATCCAGCGCAAAGTAGCTGAAAATCAGATCCGCACCCGCACGCTTAATCGAACCTAAGCTTTCGAGCACGACTTTCTCTTCATCTATAGCACCCGCCAGCGCGGCGAACTTAATC  >  NC_000913/388415‑388894

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.