New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 263075	0 (0.000)	36 (0.640)	32/484	0.6	100%	intergenic (+129/+253)	thrW/ykfI	tRNA‑Thr/toxin of the YkfI‑YafW toxin‑antitoxin system
	?	NC_000913	388644 =	0 (0.000)					coding (850/852 nt)	tauD	taurine dioxygenase

CGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAATTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGGCTTCGCTCACTATACATCCTTGGCTGCAGGTTTAGTTGTACACCACTCCTAAATTTAATGTGTTGGCAATGTGTTCAATAAAGCTCGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGG  >  NC_000913/262847‑263310                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                            cGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAATTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtccc                                                                                                                                                                                                                       >  1:512422‑M1/1‑229 (MQ=255) cGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAATTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtccc                                                                                                                                                                                                                       <  1:428259‑M1/251‑23 (MQ=255)                                             agagCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAATTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCGTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcacc                                                                                                                                                                            <  1:513104‑M1/250‑66 (MQ=255)                                                         tCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAATTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaaca                                                                                                                                                                <  2:386145‑M1/250‑78 (MQ=255)                                                           gTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAATTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggt                                                                                                                                                             <  1:197315‑M1/251‑81 (MQ=255)                                                                  gAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAATTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactcc                                                                                                                                                      <  2:518373‑M1/251‑88 (MQ=255)                                                                     ggTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAATTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccc                                                                                                                                                   <  2:414998‑M1/251‑91 (MQ=255)                                                                           aGGTTCGACTCCTATTATCGGCACCATTAAAATCAAATTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttct                                                                                                                                              <  1:131268‑M1/250‑96 (MQ=255)                                                                                     ccTATTATCGGCACCATTAAAATCAAATTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggggagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttctgagaggaaa                                                                                                                                     <  2:265464‑M1/249‑105 (MQ=255)                                                                                          tatcggaacttttaaaaccaaattGTTACGTAAGATCTTATCATTATCCCACCACACAATTCTCTTAATGTAAAAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttccacaggttaactccccctttctgagaggaaacaaaatt                                                                                                                              >  2:497179‑M1/12‑140 (MQ=255)                                                                                                cACCATTAAAATCAAATTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttctgagaggaaacaaaattaacgc                                                                                                                         >  1:523990‑M1/1‑134 (MQ=255)                                                                                                 aCCATTAAAATCAAATTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttctgagaggaaacaaaattaacgc                                                                                                                         >  1:495801‑M1/1‑133 (MQ=255)                                                                                                       aaaaTCAAATTGTTACGTAAGATCGTATCATTCTCCCACCAAAAAATTATCTTAATGTAACATCTGGTGTAAGGAAATTCTATCAACGAAGATCAATCTTATCTTCTGGCCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgccccctgggggagagggttagggtgagagggcgatcaccgtactttcaacaggttaactccccctttctgagaggaaacaaaattaacgccgaatctt                                                                                                                 <  1:332244‑M1/251‑125 (MQ=255)                                                                                                             aaaTTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttctgagaggaaacaaaattaacgctgaatcttcttctc                                                                                                           >  1:82325‑M1/1‑121 (MQ=255)                                                                                                              aaTTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATATACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctagaccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccacctttctgagaggaactaaaataaacgcagaatcttcttctc                                                                                                           >  1:329270‑M1/1‑120 (MQ=255)                                                                                                               aTTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttctgagaggaaacaaaattaacgcagaatcttcttctc                                                                                                           >  2:98514‑M1/1‑119 (MQ=255)                                                                                                                     ccgTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttctgagaggaaacaaaattaacgcagaatcttcttctcacccaaat                                                                                                   >  2:58167‑M1/2‑113 (MQ=255)                                                                                                                          aGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttctgagaggaaaccaaattaacgcagaatcttcttctcagccaaatccagc                                                                                              >  2:289240‑M1/1‑108 (MQ=255)                                                                                                                                tATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgaggggtcgttcaccgtactttcaacaggttaactccccctttctgagaggaaacaaatttaacgcagaatcttcttctcagccaaatccagcgcaaa                                                                                         <  1:354537‑M1/250‑149 (MQ=255)                                                                                                                                tATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttctgagaggaaacaaaattaacgcagaatcttcttctcagccaaatccagcgca                                                                                           <  2:512422‑M1/248‑147 (MQ=255)                                                                                                                                         cccACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagtggtctttcaccgtactttcaacatgttaactcccccttgctgagaggaaacaaaattaacgcataatcttcttctcagccaaatccagcgcaaagtagctg                                                                                  <  1:497179‑M1/248‑156 (MQ=255)                                                                                                                                               aaaaaaTTATCTTAATGTAACAGCTGGTGTAAGGAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttctgagaggaaacaaaattaacgcagaatcttcttctcagccaaatccagcgcaaagtagctgaaaatcaga                                                                         <  1:386665‑M1/251‑165 (MQ=255)                                                                                                                                                  aaaTTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttctgagaggaaacaaaattaacgcagaatcttcttctcagccaaatccagcgcaaagtagctgaaaatcagatcc                                                                      <  2:22257‑M1/251‑168 (MQ=255)                                                                                                                                                   aaTTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttctgagaggaaacaaaattaacgcagaatcttcttctcagccaaatccagcgcaaagtagctgaaaatcagatccg                                                                     <  2:65644‑M1/251‑169 (MQ=255)                                                                                                                                                               gTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttctgagaggaaacaaaattaacgctgaatcttcttctcagccaaatccagcgcaaagtagctgaaaatcagatccgcacccgcacgct                                                         <  2:82325‑M1/251‑181 (MQ=255)                                                                                                                                                                    aGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGCACAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcacccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttctgagaggaaacaaaattaacgcagaatcttcttctcagccaaatccagcgcaaagtagctgaaactcagatccgcacccgcacgcttaatc                                                    >  1:262837‑M1/1‑66 (MQ=255)                                                                                                                                                                         gtgtAAGTAAATTCTCTCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttctgagaggaaacaaaattaacgcagaatcttcttctcagccaaatccagcgcaaagtagctgaaaatcagatccgcacccgcacgcttaatcgaacc                                               >  1:400936‑M1/1‑61 (MQ=255)                                                                                                                                                                         gtgtAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttctgagaggaaacaaaattaacgcagaatcttcttctcagccaaatccagcgcaaagtagctgaaaatcagatccgcacccgcacgcttaatcgaacc                                               >  1:177861‑M1/1‑61 (MQ=255)                                                                                                                                                                                 aaaTTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacgggttaactccccctttctgagaggaaacaaaattaacgcagaatcttcttctcagccaaatccagcgcaaagtagctgaaaatcagatccgcacccgcacgcttaatcgaacctaa                                            <  2:403190‑M1/246‑194 (MQ=255)                                                                                                                                                                                 aaaTTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttctgagaggaaacaaaattaacgcagaatcttcttctcagccaaatccagcgcaaagtagctgaaaatcagatccgcacccgcacgcttaatcgaacctcagcttt                                       >  2:202046‑M1/1‑53 (MQ=255)                                                                                                                                                                                 aaaTTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttctgagaggaaacaaaattaacgcagaatcttcttctcagccaaatccagcgcaaagtagctgaaaatcagatccgcacccgcacgcttaatcgaacctaa                                            >  1:403190‑M1/1‑53 (MQ=255)                                                                                                                                                                                        aTCAACGAAGATCCAGCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgggaggtgacggtcccctcgcccccttggggagagggttagggtgagggggcgttctccgtactttcaacaggttaactccccctttctgagatgaaacaaaattaacgcagaatcttctgctcagccaattccagcgcaaagtagctgaaaatcagatccgcacccgcacgcttaagctaaccgaagctttcgagca                                 <  2:304424‑M1/250‑205 (MQ=255)                                                                                                                                                                                                    cAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttctgagaggaaacaaaattaacgcagaatcttcttctcagccaaatccagcgcaaagtagctgaaaatcagatccgcacccgcacgcttaatcgaacctaagctttcgagcacgactttctcttc                    >  1:36883‑M1/1‑34 (MQ=255)                                                                                                                                                                                                    cAATCTTATCTACTGACCAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttctgagaggaaacaaaattaacgcagaatcttcttctcagccaaatccagcgcaaagtagctgaaaatcagatccgcacccgcacgcttaatcgaacctaagctttcgagcacgactttctctt                     <  2:177861‑M1/250‑217 (MQ=255)                                                                                                                                                                                                                     cAAAAAGGCCTGATAGGtaatacgagagtggacggtcccctcgcccccttggggagagggttagggtgagggggcgttcaccgtactttcaacaggttaactccccctttctgagaggaaacaaaattaacgcagaatcttcttctcagccaaatccagcgcaaagtagctgaaaatcagatccgcacccgcacgcttaatcgaacctaagctttcgagcacgactttctcttcatctatagcacccgcc    >  2:157647‑M1/1‑17 (MQ=255)                                                                                                                                                                                                                      aaaaaGGCCTGATAGGtaatacgagagtggagggtcccctcgcccccttggggagagggttagggtgagggggctttcaccgtactttcaacaggttaactccccctttctgagaggaaacaaaattaacgcagaatcttcttctcagccaaatccagcgcaaagtagctgaaaatcagatccgcacccgcacgcttaatcgaacctaagctttcgagcacgactttctcttcatctatagcacccgccag  <  2:161747‑M1/251‑236 (MQ=255)                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                            CGTTCGTGAACATGTCCTTTCAGGGCCGATATAGCTCAGTTGGTAGAGCAGCGCATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTAAAATCAAATTGTTACGTAAGATCTTATCATTCTCCCACCAAAAAATTATCTTAATGTAACAGCTGGTGTAAGTAAATTCTATCAACGAAGATCAATCTTATCTACTGACCAAAAAGGCCTGATAGGGCTTCGCTCACTATACATCCTTGGCTGCAGGTTTAGTTGTACACCACTCCTAAATTTAATGTGTTGGCAATGTGTTCAATAAAGCTCGAACAAATTAGCTCATTATGATCGGTTAATACTTCAACTTCTGGTTGCATGATTGTTTGTCCGTAAAAAGATAACGCGCCTGCCGGGTAGTAGCAGGCGCATTACGCAATAGGTAAACAAGGGAGGAAGTTCAGAAATGTAAATCGGG  >  NC_000913/262847‑263310

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.