| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,060,444 | Δ19,761 bp | yihL–yiiF | 19 genes yihL, yihM, yihN, ompL, yihO, yihP, yihQ, yihR, yihS, yihT, yihU, yihV, csqR, yihX, yihY, dtd, fabY, yiiE, yiiF |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4060444 | 4080204 | 19761 | 25 [0] | [1] 26 | yihL–yiiF | yihL,yihM,yihN,ompL,yihO,yihP,yihQ,yihR,yihS,yihT,yihU,yihV,csqR,yihX,yihY,dtd,fabY,yiiE,yiiF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4060443 | 0 (0.000) | 25 (0.810) | 24/488 | 0.3 | 100% | intergenic (+213/‑4) | bipA/yihL | 50S ribosomal subunit assembly factor BipA/putative DNA‑binding transcriptional regulator YihL |
| ? | NC_000913 | 4080205 = | 0 (0.000) | intergenic (+236/+94) | yiiF/fdhE | protein YiiF/formate dehydrogenase formation protein | |||||
GCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAAGAGAGCTGGGAGAACTGCTGGGCATTAAACGTATGACGCTGCGCCAGGCGTTGTTGAACCTCGAGGCAGAATCCAAAATCTTCCGTAAGGATCGTAAGGGGTGGTTCGTGACCCAGCCGCGATTTAATTACAGT > NC_000913/4060199‑4060680 | gccgcGCCAACCGCGCACCGAAAGACGATTAATTTCGCTTTTTAGTCATAAACAACCTGCCAGCGATGGAAGGTTTTTTTTTGCCTGTCGTGAGCGCACAACAATGCGAGTATCTCCCTTATAAGTCTGCGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAgcttgg > 1:156307‑M1/1‑245 (MQ=255) ccAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTCGTCATAACAAACCTGACAGCGATGGCAGGGTTTTTTTTGAATGTGGTAAGAGCACACCCATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGATTCATCTGGTTTAAACCAAAAGGATTAAgcttgaggtggt > 1:278977‑M1/1‑239 (MQ=255) tAGTCATAAGAAACCTGCCAGCGATAGCAGGTTTTTTTTTGACTGTCGTAAGCGCACCCCAATGCGCGTATCTCCCTTATAAGTCTGTGGTTACGTCCATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGCTTAAgcttgaggtggtaacgcggaatacgagagatggtgtcgtaaaaccct > 2:211813‑M1/1‑203 (MQ=255) gTCATCAAAACCCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGGCGTGAGCAAACAACAATGCGAGGATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTCTGTCACAATTACCTGCAAACTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGCATTAAgcttgaggaggtaaggcggaatccgagagatggtggcgtcaccccccatg > 2:90906‑M1/1‑201 (MQ=255) aaaaCCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAgcttgaggtggtaacgcggaatacgagagatggtgtcgtcacaccctatgagctgta < 2:250889‑M1/251‑58 (MQ=255) ggTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTGTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAgcttgaggtggtaacgcggaatacgagagatgggggcgtcacaccctatgagctgtaatccgggcgacctgcgccac < 1:297330‑M1/251‑78 (MQ=255) ggTTTTTTTTTGCCTGGCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTGTGTCGTAAGCGGAAGATGCGTCATCTGGTTTAAACCAAAAGTATTAAgcttgaggtggtaactcggaatacgagagatggtgtcgtctcaccctatgagctgtaatccgggcgacctgcgccac < 1:286930‑M1/251‑78 (MQ=255) ttttttttGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGGAAGATGCTTCAGCTGGTTTAAACCAAAAGGATTAAgcttgaggtggtaacgcggaatacgagagatggtttcggcacaccctatgagctgtaatccgggcgacctgcgccaccc < 1:133058‑M1/250‑80 (MQ=255) tttttGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAgcttgaggtggtaacgcggaatacgagagatggtgtcgtcacaccctatgagctgtaatccgggcgacctgcgccacccgga < 1:168977‑M1/250‑83 (MQ=255) cGTGAGCGCACACCAATGCGAGTAGCTCCCTTAGAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAgcttgaggtggtaacgcggaatacgagagatggtgtcgtcacaccctatgagctgtaatccgggcgacctgcgccacccggaaaacgtcagaga < 2:88446‑M1/251‑95 (MQ=255) cGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAgcttgaggtggtaacgcggaatacgagagatggtgtcgtcacaccctatgagctgtaatccgggcgacctgcgccacccggaaaacgtcagagattactctccttcacccgg > 1:170434‑M1/1‑139 (MQ=255) gTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAgcttgaggtggtaacgcggaatacgagagatggtgtcgtcacaccctatgagctgtaatccgggcgacctgcgccacccggaaaacgtcagagatttctctcctgcacccggaaa < 2:204630‑M1/251‑116 (MQ=255) aCGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAgcttgaggtggtaacgcggaatacgagagatggtgtcgtcacaccctatgagctgtaatccgggcgacctgcgccacccggaaaacgtcagagattactctccttcacccggcaacaggaacgggttgatggaactgcgg > 2:296914‑M1/1‑111 (MQ=255) agagCTTTGTCACAATTATCTGCACCGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGAAAGCTGCTTCATCTGGTTTAAACCAAAAGGATTAAgcttgaggtggtaacgcggaatacgagagatggtgtcgtcacaccctatgagctgtaatccgggcgacctgcgccacccggaaaacgtcagagattactctccttcacccggaaacaggaacgggttgatggaactgcgggcatagcctt > 2:156214‑M1/1‑101 (MQ=255) aCGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCCAAAGGATTAAgcttgaggtggtaacgcggaatacgagagatggtgtcgtcacaccctatgagctgtaatccgggcgacctgcgccacccggaaaacgtcagagattactctccttcacccggaaacaggaacgggttgatggaactgcgggcatagccttcttgctccattcgtgcgtccagtaccag > 1:218196‑M1/1‑70 (MQ=255) aTTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAgcttgaggtggtaacgcggaatacgagagatgttgtcgtcacgtcctatgagctgtaagccgggcgaccttctcctcccggaaaacgtcatatattactctccttcacccggaaacaggttcgggtggatggaactgcgggcatagcggtcttgctccattcgtgcgtccagtaccagagaggcgaggtc < 1:49342‑M1/251‑191 (MQ=255) ctttctttTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAgcttgaggtggtaacgcggaatacgagagatggtgtcgtcacaccctatgagctgtaatccgggcgacctgcgccacccggaaaacgtcagagattactctccttcacccggaaacaggaacgggttgatggaactgcgggcatagccttcttgctccattcgtgcgtccagtaccagagaggcgaggtcatct > 2:60744‑M1/1‑57 (MQ=255) tttctttTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACAACAAGGATTAAgcttgaggaggtaacgcggaatacgagagatggtgtcgtcacaccctatgagctgtaatccgggcgacctgcgccacccggaaaacgtcagagattactctccttcacccggaaacaggaacgggttgatggaactgcgggcatagccttcttgctccattcgtgcgtccagtaccagagaggcgaggtcatctg > 1:143542‑M1/1‑56 (MQ=255) ttctttTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAATGATTAAgcttgaggtggtaacgcggaatacgagagatggggtcgtcacaccctatgagctgtaatccgggcgacctgcgccacccggaaaacgtcagagattactctcctgcgcccggaaacaggaacgggttgatggaactgcgggcatagccttcttgctccattcgtgcgtccagtaccagagaggcgatgtcatct < 2:156307‑M1/249‑195 (MQ=255) tctttTTTGGCGTAAGCGTAAGATGCTTCATCTGGGTTAAACCAAAAGGATTAAgctagaggaggtaacgcggaatacgagagatggtgtcgtcacaccctatgagcagtaatccgggcgacctgcgccacccggaaaacgtcagagattactctccttcacccggaaacaggaacgggttgatggaactgcgggcatagccttcgtgctccattcgtgcgtccattcccagataggcgaggtcatctgc < 2:36424‑M1/250‑197 (MQ=255) cgtaagcgtaagATGCTTGCTCTGGTTTAAACCAAAAGGATTAAgcttgaggtggtaacgcggaatacgagagatggtgtcgtcacaccctatgagctgtaatccgggcgacctgcgccacccggaaaacgtcagagattactctccttcacccggaaacaggaacgggttgatggaactgcgggcatagccttcttgctccattcgtgcgtccagtaccagagaggcgaggtcatctgctacggcttcgt > 2:55057‑M1/1‑44 (MQ=255) aagATGCTTCATCTGGTTTAAACCAAAAGGATTAAgcttgaggtggtaacgcggaatacgagagatggtgtcgtcacaccctatgagctgtaatccgggcgacctgcgccacccggaaaacgtcagagattactctccttcacccggaaacaggaacgggttgatggaactgcgggcatagccttcttgctccattcgtgcgtccagtaccagagaggcgaggtcatctgctacggcttcgatttttggat < 1:296914‑M1/251‑217 (MQ=255) gCTTCATCTGGTTTAAACCAAAAGGATTAAgcttgaggtggtaacgcggaatacgagagatggtgtcgtcacaccctatgagctgtaatccgggcgacctgcgccacccggaaaacgtcagagattactctccttcacccggaaacaggaacgggttgatggaactgcgggcatagccttcttgctccattcgtgcgtccagtaccagagaggcgaggtcatctgctacggcttcgatttttggatctttt > 1:124442‑M1/1‑30 (MQ=255) ttAAACCAAAAGGATTATgcttgaggtggtaacgcggaatacgagcgatgctgccgtcacaccctatgcgctgtaatccgggagcactgcgccacccggaaaacgtcagcgattactatccttcacccggaaacaggaacgggttgatggaactgcgcgcatagacttcttgctccattcgagcgtccagtaccagagaggcgaggtcatctgctacggcttcgatttttggatctttttcctgatag > 1:134621‑M1/1‑18 (MQ=255) aCCAAAAGGATTAAgcttgaggtggtaacgcggaatacgagagatggtgtcgtcacaccctatgagctgtaatccgggcgacctgcgccacccggaaaacgtcagagattactctccttcacccggaaacaggaacgggttgatggaactgcgggcatagccttcttgctccattcgtgcgtccagtaccagagaggcgaggtcatctgctacggcttcgatttttggatctttttcctgatagagaattt < 2:170434‑M1/251‑238 (MQ=255) | GCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCAAAGTCATACGCCGTTAATTGCTTTCTTTTTTGGCGTAAGCGTAAGATGCTTCATCTGGTTTAAACCAAAAGGATTAAACAATGGCGGAGAATCAATCCACCGTAGAAAATGCAAAAGAGAAACTGGATCGGTGGTTGAAAGATGGCATCACCACGCCGGGTGGAAAACTCCCTTCAGAAAGAGAGCTGGGAGAACTGCTGGGCATTAAACGTATGACGCTGCGCCAGGCGTTGTTGAACCTCGAGGCAGAATCCAAAATCTTCCGTAAGGATCGTAAGGGGTGGTTCGTGACCCAGCCGCGATTTAATTACAGT > NC_000913/4060199‑4060680 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |