Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	2,016,437	Δ2 bp :: IS186 (–) +8 bp :: Δ1 bp	coding (570‑577/687 nt)	fliH →	flagellar biosynthesis protein FliH

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2016437 =	0 (0.000)	36 (1.180)	32/484	0.1	100%	coding (570/687 nt)	fliH	flagellar biosynthesis protein FliH
	?	NC_000913	2514274 =	NA (NA)					noncoding (2/1345 nt)	IS186	repeat region
*	?	NC_000913	= 2016444	0 (0.000)	45 (1.470)	43/486	0.0	100%	coding (577/687 nt)	fliH	flagellar biosynthesis protein FliH
	?	NC_000913	= 2515615	NA (NA)					noncoding (1343/1345 nt)	IS186	repeat region

GTGGCTTCCAGCACCAGCCCGGTAGCGCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGccc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2016678‑2016437 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTCACTGCAT  >  NC_000913/2514274‑2514517                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTGGCTTCCCGCACCAGCCCGTTAGCTCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATGTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGC                                                                                                                                                                                                                                             <  2:91257/251‑1       cCCAGCTCCAGCCCGGTATCGCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGGGGTTAGCCAGCTAGTCAGGCGCGTGGTCATTACACCACTCCTGGGGCTGCCAGACGGCAGAGTGCTTGCCAGCGAGTGGCGGCACGGGGGTCGAGATCGCCTTCAGCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGCGATCGCCCAAAAGCGCTAA                                                                                                                                                                                                                                        <  2:296414/249‑1        CCAGCACCAGCCCGGTAGCGCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCGCTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAAC                                                                                                                                                                                                                                       <  1:175303/250‑1          AGCACCAGCCCGGTAGCGCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGGGGGTGGGATCGCCCATAAGCGCTCACTT                                                                                                                                                                                                                                     >  1:32427/1‑250                         GCGCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGGGGGTGGGGTCGGCCATAAGCGCTAACTTAAGGGGTGTGGGATT                                                                                                                                                                                                                      >  1:90544/1‑250                                   ATCGCCCGTAGCGACGTACCGCAGGCAGCTTCGCCATGTTGGCTACAAAGGTATCCAGCGTGTTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGCCACTGGCGTCGAGATCGCCTTCAGCGGCGGAGACTTTACAGTCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTTCGCCTGATAT                                                                                                                                                                                                           <  2:174178/251‑1                                          gtagcgcctgACCGCAGGCAACTGCTCCATTTTGGCTTCAAAGTTTTCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCTCTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAA                                                                                                                                                                                                    <  2:43773/241‑1                                               GACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGACGGAGGGGGGGGTCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGC                                                                                                                                                                                               >  1:15831/1‑251                                                  GTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGGTCGCCCATAAGCGCTAACTTAAGGGGTGGGGGATTACGCCTGATATGATTTAACGTGCCGc                                                                                                                                                                                            >  2:52696/1‑250                                                          GGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACGGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTAC                                                                                                                                                                                    <  2:90544/251‑1                                                             AACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTCGCAAGCGAGTCAGGCGCGTGGACATTACACCACTCCTGGTGCTGCCCGACGGCAGAGTTCTTGCCAGCGAGAGGAGACACTGGCGACGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCAAGGAAGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATCTGATTTAACGTGCCGATGAATTACTCT                                                                                                                                                                                 >  1:50263/1‑251                                                                        TTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCCGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGCGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGGCCTTACAGCCGCCCGGATGGAGGGTGGGAACGCCCATAAGCGCTAACTTCAGGGGTTTGGGATTTCGCCTGGTATGCTTTAACGGGCCGAAGGATTACTCTCACGCTAAatg                                                                                                                                                                      >  2:212853/1‑248                                                                        TTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTTCACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACT                                                                                                                                                                       <  1:14152/250‑1                                                                        TTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGACTCAGGAGCGTGGTCATTACACCAATCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGACGAGATAGCCTTCATCGGCGGAGACTTAACAGCCGCCAGGATGGAGGGTGGGATCGCCCCTACGCGCTAACTTAAGGGTTATGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTCCTCTCACGATAACTG                                                                                                                                                                      >  1:211119/1‑251                                                                        TTTGGCTTCAAAGTTAGCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGGGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGGGACTTTACAGCCGCCAGTATTGAGGGTGGGAGCGCCCTTAGGCGCTAAGTTAAGGGTTGTGGTATGACGTCGGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACT                                                                                                                                                                       <  1:17882/250‑1                                                                          ttGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTAAAGACGCCCGGATGGAGGGGGGGGTCGCCCATAAGCGCTAACTTAAAGGGTGTGGTATTACGCCTGATATGATTTAACGGGCCGATGAATTAATCTCACGgatactggg                                                                                                                                                                    >  2:222520/3‑242                                                                            GCTTCAAAGTTAGCCAGCGTGGGTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGGAGAGTTCTTGCCGGCGAGTGGCGACTCTGGAGTCGAGATCGCCTTCATCGGCGGAGACTGTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTGGTGGTATTACGCCTGATATGATTTAACGTGCCGATGGATTGCTGTCACGATAACTGGTCA                                                                                                                                                                  <  2:21085/251‑1                                                                                    GTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTAGTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCT                                                                                                                                                          <  1:135479/251‑1                                                                                         CCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAATGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTTGTCAGCAATTCTGGCCC                                                                                                                                                     <  1:181420/251‑1                                                                                                   TAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGCCACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGCTGGAGGGTGGGATCGCCCATAAGGGCTAACTTAAGGGTTGTTGTATTACGCCTGCTATGCTTTAACGTTCCGATGAATTACTCTCACGGTACCTCGTCAGCAACTCTGGCacctcttggta                                                                                                                                            >  2:69223/1‑239                                                                                                                   CGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGAT                                                                                                                           <  2:62320/251‑1                                                                                                                        GGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTC                                                                                                                      <  1:73328/251‑1                                                                                                                                   CACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATG                                                                                                           <  2:5836/251‑1                                                                                                                                      TCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCCGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGGTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGCTAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCG                                                                                                        >  2:93913/1‑251                                                                                                                                           GTGCTGCCAGACGGCATAGTTCTTTCCAGCGAGAGGCGACACTTGCGTCGAGATCTCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGAGCTCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCTGATGAATTACTCTCACGATAGCTGTTCAGCAATTCTGGCGCATATTGATAAGCTCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCT                                                                                                   <  1:269934/251‑1                                                                                                                                                       GGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGGTGTGGGATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGGTAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGC                                                                                       >  1:18038/1‑251                                                                                                                                                       GGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGGGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGGATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTCATCCCGAAGAACTGGATACTTCGGCCAGTAATTACGGGGCTCTACCCCGCCGC                                                                                       >  2:231115/1‑251                                                                                                                                                            AGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGGGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGg                                                                                  >  2:102241/1‑250                                                                                                                                                                 TTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATAATTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGGAATTC                                                                             >  1:171504/1‑251                                                                                                                                                                          AGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTG                                                                    <  1:276627/251‑1                                                                                                                                                                                      GGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCT                                                          <  1:1773/249‑1                                                                                                                                                                                                                             GCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTAC                 <  1:222910/251‑1                                                                                                                                                                                                                             GCCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTAGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTAC                 >  1:92/1‑251                                                                                                                                                                                                                              CCAGGATGGAGGGTGGGATCGCCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGTCCCCGGGGGGATGTCATTACG                <  1:95409/251‑1                                                                                                                                                                                                                                     gggGGGTGGGAGCGCCCATAAGCGCTAACTTAAGGGTTGTGTTATTACGCCTGATATGAGTTAACGTGCCCATGAATTACTCTCACGATAACTGGGCAGCAATTCTGGCCCATATTGGTATGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGTGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTTCGTGAAGT          <  2:214309/247‑1                                                                                                                                                                                                                                            GGGATCGACCATAAGAGCCAACTTAAGGGGTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTCACTGCAT  >  1:87561/1‑251                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTGGCTTCCAGCACCAGCCCGGTAGCGCGGGTTAATCGCCCGTAGCGACGTACCGCAGGCAACTGCGCCATTTTGGCTTCAAAGTTATCCAGCGTGGTTAGCCAGCGAGTCAGGCGCGTGGTCATTACACCACTCCTGGTGCTGCCAGACGGCAGAGTTCTTGCCAGCGAGTGGCGACACTGGCGTCGAGATCGCCTTCATCGGCGGAGACTTTACAGCCGCCAGGATGGAGGGTGGGATCGccc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2016678‑2016437 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGTGGTATTACGCCTGATATGATTTAACGTGCCGATGAATTACTCTCACGATAACTGGTCAGCAATTCTGGCCCATATTGGTAAGCCCGAAGAACTGGATACTTCGGCACGTAATGCCGGGGCTCTAACCCGCCGCCGCGAAATTCGTGATGCTGCAACTCTGCTACGTCTGGGGCTGGCTTACGGCCCCGGGGGGATGTCATTACGTGAAGTCACTGCAT  >  NC_000913/2514274‑2514517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.