| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,640,057 | Δ7,591 bp | [rrrQ]–[dicC] | 18 genes [rrrQ], [ydfR], essQ, ynfU, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, [dicC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1640057 | 1647647 | 7591 | 25 [0] | [0] 25 | [rrrQ]–[dicC] | [rrrQ],[ydfR],essQ,ynfU,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,[dicC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1640056 | 0 (0.000) | 25 (0.540) | 25/484 | 0.7 | 100% | coding (2/534 nt) coding (310/312 nt) |
rrrQ ydfR |
putative lysozyme protein YdfR |
| ? | NC_000913 | 1647648 = | 0 (0.000) | coding (203/231 nt) | dicC | putative DNA‑binding transcriptional regulator DicC | |||||
CACGCTCAATGGCGTTGACCTGGTCGCATTTTTCCTTCGACAGTTTCATATTGGGAAAAACGGTTTTTCCATCCACCACTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGA‑T‑TTTTGTGTTCATAGATATTTATGATGAGGACGCTCGTGCTTATTGGCAGGATTTTCAATCTTAAAGGAGTACTGATGCTGCAGATAAGACTCAACTTTTTCTGACAATTTTTCTGCTACTTCCAGGAAGACTTGCCGGACGCTCCTTCTGGCTGCTGCCTCATAAAACTCCAGCGCAGCTCCTTCAACACGGTCCATGGCGACATCCAGGTCAAAAAT > NC_000913/1639811‑1640263 | cACGCTCAATGGCGTTGACCTGGTCGCATTTTTCCTTCGACAGTTTCATATTGGGAAAAACGGTTTTTCCATCCACCACTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGA‑TCTTTTGTGTTCAccc < 1:264321‑M1/250‑4 (MQ=255) aTGGCGTTGCCCTGGTCGCATTTTTCCTGCGACAGTTTCATATTGGGAAAAACGGTGTTTCCGGCCACCACTGTGGCACCCCGACAGATGGTCCATATGCCAGACCCAGCGCGGTATGCCATGGTGTGGTTACCTGGTGTTTCTTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCGGCCGACAGGCCGTATCTGA‑TCTTTTGTGTTCTcccgcccgcttc < 2:401956‑M1/251‑13 (MQ=255) aGTTTCATATTGGGAAAAACGGTTTTTCCATCCACCACTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAAATGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGA‑TCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatc > 2:393531‑M1/1‑206 (MQ=255) aaaaaCGGTTTTTCCATCCACCACTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGA‑TCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggctcatactgaagctcccc > 1:39474‑M1/1‑192 (MQ=255) aaaaaCGGTTTTTCCATCCACCACTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGA‑TCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctcccc < 1:274159‑M1/251‑60 (MQ=255) ttttcctcccaccactgtggcaCCCCGACAGATGGTCCATATGCCAGAACCAGCGCGGTAGGCCATTGTGTGGTTTCCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATTTGA‑TCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatg < 1:200131‑M1/242‑68 (MQ=255) tccatccaCCACTGCAGCACCCCCACCCATGGTCCATATGCCAGAACCATCGCCGTATGCCATTGTGAGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTCTCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGC‑TCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaacattgggatcatactgaatctccccgccagatgcctc > 2:193528‑M1/1‑180 (MQ=255) caccacTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGA‑TCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtag < 1:393531‑M1/251‑78 (MQ=255) ccccccgaCAGATGTTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGA‑TCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgc < 2:104387‑M1/249‑89 (MQ=255) aCAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGCGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGA‑TCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcctcgcgcgaccttc > 2:177262‑M1/1‑156 (MQ=255) tCCATATGCCAGAACCATCGCGGTATGCCTTTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTAGCTGAGGCGCGGAGGCGCCAGCACCAATCAGCCCCAGAACGGCAGCCGACAGGCCTTATCTGA‑TCTTTTGTGTTCAcccgcccgcttcgtctgacgatattcatcataaactttgggatcatactgaagctccccgccagatgccgcctgtagacgcatcgcgcgaccttcgggaact < 2:159506‑M1/250‑103 (MQ=255) cATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGACACTGGTCAAGTATCTGAGGAGCAGATGCGCCCGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGA‑TCTTTTGTGTTCAcccgcccgcttcgtcttccgatattcatcataacctttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagc > 1:436865‑M1/1‑133 (MQ=255) ccATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAAGCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGATT‑TTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaa < 2:404743‑M1/250‑130 (MQ=255) ttttCGTCCAGAACCTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAAAACGGCAGCCGACAGGCCGTATCTGA‑TCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctgtccagctataaagcgaagccaaacgaatacctgct < 2:185859‑M1/248‑148 (MQ=255) cAGAAACTGGTCAAGTCTCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGA‑TCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagccgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagcaaaacgaatacctgctgcttgtgca > 1:170429‑M1/1‑93 (MQ=255) aaaCTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGA‑TCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttt > 1:103785‑M1/1‑90 (MQ=255) ggTCAAATACCTGACGAGCAGATACGCCAGCCCAAATCACCGCCAGAACGGCACCCGACAGGACGTGTCTGA‑TCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggctcatactgaagctccccgccagctgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagagaagccaaacgaataactgctgcttgtgcaagttttgttt > 2:199231‑M1/1‑85 (MQ=255) acaAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGA‑TCTTTTGTGTTCAcccgcccgctacgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgttttt < 1:429650‑M1/250‑169 (MQ=255) aTCTGAGGATCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGA‑TCTGTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaacgttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccatctataaagcgaagccaaacgaataccgtctgcttgtgcaagttttgtttttgaacc < 2:436865‑M1/250‑174 (MQ=255) cTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGA‑TCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgtttttgaaccga > 2:448020‑M1/1‑75 (MQ=255) ggagCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGA‑TCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctcc < 1:316240‑M1/128‑58 (MQ=255) ggagCAGATGAGCCAGCACAAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGC‑TCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctcc > 2:316240‑M1/1‑71 (MQ=255) gagCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTAA‑TCTTTTGTGTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgtttttgaaccgaaatac > 2:105745‑M1/1‑70 (MQ=255) aaTCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGA‑TCTTTTGTGTTCAcccgcacgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcatcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatccctgctgcttgtgcaagttttgtttttgaaccgaaatcaaaaagagcgtccgctttagg > 2:124405‑M1/1‑51 (MQ=255) cccgaaccggcggcctacgggccgtatctga‑tcttttgtgTTCAcccgcccgcttcgtcttacgatattcatcataaactttgggatcatactgaagctccccgccagatgcctcctgtagacgcatcgcgcgaccttcgggaactaaatcccctttccagctataaagcgaagccaaacgaatacctgctgcttgtgcaagttttgtttttgaaccgaaatacaaaagagcgtcagtttgaagcatttaa < 2:150212‑M1/232‑208 (MQ=255) | CACGCTCAATGGCGTTGACCTGGTCGCATTTTTCCTTCGACAGTTTCATATTGGGAAAAACGGTTTTTCCATCCACCACTGTGGCACCCCGACAGATGGTCCATATGCCAGAACCATCGCGGTATGCCATTGTGTGGTTACCTTCTTTTTCGTCCAGAAACTGGTCAAGTATCTGAGGAGCAGATGCGCCAGCACCAATCAGCGCCAGAACGGCAGCCGACAGGCCGTATCTGA‑T‑TTTTGTGTTCATAGATATTTATGATGAGGACGCTCGTGCTTATTGGCAGGATTTTCAATCTTAAAGGAGTACTGATGCTGCAGATAAGACTCAACTTTTTCTGACAATTTTTCTGCTACTTCCAGGAAGACTTGCCGGACGCTCCTTCTGGCTGCTGCCTCATAAAACTCCAGCGCAGCTCCTTCAACACGGTCCATGGCGACATCCAGGTCAAAAAT > NC_000913/1639811‑1640263 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |