| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,640,057 | Δ7,591 bp | [rrrQ]–[dicC] | 18 genes [rrrQ], [ydfR], essQ, ynfU, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, [dicC] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1640057 | 1647647 | 7591 | 25 [0] | [0] 25 | [rrrQ]–[dicC] | [rrrQ],[ydfR],essQ,ynfU,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,[dicC] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1640056 | 0 (0.000) | 25 (0.540) | 25/484 | 0.7 | 100% | coding (2/534 nt) coding (310/312 nt) |
rrrQ ydfR |
putative lysozyme protein YdfR |
| ? | NC_000913 | 1647648 = | 0 (0.000) | coding (203/231 nt) | dicC | putative DNA‑binding transcriptional regulator DicC | |||||
TTATCCCTGGTGTCGATAGCCTTCCAGCGTTCAAATATCTTCACTCGATTAACGCCAAGCGCTCGCTGATCAATCGCGCCACCTTCATATGTGACACGCTGAACATCGATGTTCGGGCGCTCTTTCAAAGCCCAGAATGCTTCAGTGATTAATATCGTCGCCTGCTCCTGTGTCATTCCTGGTCGACATATCCAGGCATCCAGAGCCTCACGAGCCTGTTCAGGAGTGATTTTCATTGTTCAACCGCCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGCTTGTGCAAGTTTTGTTTTTGAACCGAAATACAAAAGAGCGTCAGTTTTAAGCATTTAA > NC_000913/1647401‑1647854 | cacgctcaatggcgttgacctggtcgcatttttccttcgacagtttcatattgggaaaaacggtttttccatccaccactgtggcaccccgacagatggtccatatgccagaaccatcgcggtatgccattgtgtggttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaccc < 1:264321‑M2/3‑1 (MQ=255) atggcgttgccctggtcgcatttttcctgcgacagtttcatattgggaaaaacggtgtttccggccaccactgtggcaccccgacagatggtccatatgccagacccagcgcggtatgccatggtgtggttacctggtgtttcttccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcggccgacaggccgtatctgatcttttgtgttctCCCGCCCGCTTc < 2:401956‑M2/12‑1 (MQ=255) agtttcatattgggaaaaacggtttttccatccaccactgtggcaccccgacagatggtccatatgccagaaccatcgcggtatgccattgtgtggttaccttctttttcgtccagaaaatggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATc > 2:393531‑M2/207‑250 (MQ=255) aaaaacggtttttccatccaccactgtggcaccccgacagatggtccatatgccagaaccatcgcggtatgccattgtgtggttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGCTCATACTGAAGCTcccc > 1:39474‑M2/193‑251 (MQ=255) aaaaacggtttttccatccaccactgtggcaccccgacagatggtccatatgccagaaccatcgcggtatgccattgtgtggttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTcccc < 1:274159‑M2/59‑1 (MQ=255) ttttcctcccaccactgtggcaccccgacagatggtccatatgccagaaccagcgcggtaggccattgtgtggtttccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatttgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATg < 1:200131‑M2/67‑1 (MQ=255) tccatccaccactgcagcacccccacccatggtccatatgccagaaccatcgccgtatgccattgtgaggttaccttctttttcgtccagaaactggtcaagtctctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgctcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACATTGGGATCATACTGAATCTCCCCGCCAGATGcctc > 2:193528‑M2/181‑251 (MQ=255) caccactgtggcaccccgacagatggtccatatgccagaaccatcgcggtatgccattgtgtggttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAg < 1:393531‑M2/77‑1 (MQ=255) ccccccgacagatgttccatatgccagaaccatcgcggtatgccattgtgtggttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATcgcgc < 2:104387‑M2/88‑1 (MQ=255) acagatggtccatatgccagaaccatcgcggtatgccattgtgtggttaccttctttttcgtccagaaactggtcaagtatctgcggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCCTCGCGCGACCTTc > 2:177262‑M2/157‑251 (MQ=255) tccatatgccagaaccatcgcggtatgcctttgtgtggttaccttctttttcgtccagaaactggtcaagtagctgaggcgcggaggcgccagcaccaatcagccccagaacggcagccgacaggccttatctgatcttttgtgttcaCCCGCCCGCTTCGTCTGACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCGCCTGTAGACGCATCGCGCGACCTTCGGGAACt < 2:159506‑M2/102‑1 (MQ=255) catcgcggtatgccattgtgtggttaccttctttttcgtccagacactggtcaagtatctgaggagcagatgcgcccgcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTCCGATATTCATCATAACCTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGc > 1:436865‑M2/134‑251 (MQ=255) ccattgtgtggttaccttctttttcgtccagaaactggtcaagtatctgaggagcagatgcgccagcaccaagcagcgccagaacggcagccgacaggccgtatctgattttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGaa < 2:404743‑M2/129‑1 (MQ=255) ttttcgtccagaacctggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccaaaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTGTCCAGCTATAAAGCGAAGCCAAACGAATACctgct < 2:185859‑M2/147‑1 (MQ=255) cagaaactggtcaagtctctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGCCGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCAAAACGAATACCTGCTGCTTGTGCa > 1:170429‑M2/94‑249 (MQ=255) aaactggtcaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGCTTGTGCAAgttt > 1:103785‑M2/91‑251 (MQ=255) ggtcaaatacctgacgagcagatacgccagcccaaatcaccgccagaacggcacccgacaggacgtgtctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGCTCATACTGAAGCTCCCCGCCAGCTGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGAGAAGCCAAACGAATAACTGCTGCTTGTGCAAgttttgttt > 2:199231‑M2/86‑251 (MQ=255) acaagtatctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTACGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGCTTGTGCAAGTTTTGttttt < 1:429650‑M2/168‑1 (MQ=255) atctgaggatcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatctgttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACGTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCATCTATAAAGCGAAGCCAAACGAATACCGTCTGCTTGTGCAAGTTTTGTTTTTGAAcc < 2:436865‑M2/173‑1 (MQ=255) ctgaggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGCTTGTGCAAGTTTTGTTTTTGAACCGa > 2:448020‑M2/76‑250 (MQ=255) ggagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTcc < 1:316240‑M2/57‑1 (MQ=255) ggagcagatgagccagcacaaatcagcgccagaacggcagccgacaggccgtatctgctcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTcc > 2:316240‑M2/72‑128 (MQ=255) gagcagatgcgccagcaccaatcagcgccagaacggcagccgacaggccgtatctaatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGCTTGTGCAAGTTTTGTTTTTGAACCGAAATAc > 2:105745‑M2/71‑250 (MQ=255) aatcagcgccagaacggcagccgacaggccgtatctgatcttttgtgttcaCCCGCACGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCATCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATCCCTGCTGCTTGTGCAAGTTTTGTTTTTGAACCGAAATCAAaaagagcgtccgctttagg > 2:124405‑M2/52‑242 (MQ=255) cccgaaccggcggcctacgggccgtatctgatcttttgtgttcaCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGCTTGTGCAAGTTTTGTTTTTGAACCGAAATACAAAAGAGCGTCAGTTTGAAGCATTTaa < 2:150212‑M2/207‑1 (MQ=255) | TTATCCCTGGTGTCGATAGCCTTCCAGCGTTCAAATATCTTCACTCGATTAACGCCAAGCGCTCGCTGATCAATCGCGCCACCTTCATATGTGACACGCTGAACATCGATGTTCGGGCGCTCTTTCAAAGCCCAGAATGCTTCAGTGATTAATATCGTCGCCTGCTCCTGTGTCATTCCTGGTCGACATATCCAGGCATCCAGAGCCTCACGAGCCTGTTCAGGAGTGATTTTCATTGTTCAACCGCCCCGCCCGCTTCGTCTTACGATATTCATCATAAACTTTGGGATCATACTGAAGCTCCCCGCCAGATGCCTCCTGTAGACGCATCGCGCGACCTTCGGGAACTAAATCCCCTTTCCAGCTATAAAGCGAAGCCAAACGAATACCTGCTGCTTGTGCAAGTTTTGTTTTTGAACCGAAATACAAAAGAGCGTCAGTTTTAAGCATTTAA > NC_000913/1647401‑1647854 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |