Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 2,016,437 Δ2 bp :: IS186 (–) +8 bp :: Δ1 bp coding (570‑577/687 nt) fliH → flagellar biosynthesis protein FliH

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2016437 =1 (0.030)34 (1.130) 32/480 0.1 97.0% coding (570/687 nt) fliH flagellar biosynthesis protein FliH
?NC_000913 2514274 = NA (NA)noncoding (2/1345 nt) IS186 repeat region
* ? NC_000913 = 20164443 (0.100)39 (1.290) 38/482 0.0 92.6% coding (577/687 nt) fliH flagellar biosynthesis protein FliH
?NC_000913 = 2515615 NA (NA)noncoding (1343/1345 nt) IS186 repeat region

GATGCACTTGATAGTGTGATAGCGTCGCGCCTGATGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGATTAACCCGCGCTACCGGGCTGGTGCTGGAAGCCACCGGATTACAA  >  NC_000913/2016195‑2016688
                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                    
gATGCACTTGATAGTGTGATAGCGTCGCGCCTGATGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCa                                                                                                                                                                                                                                                      <  1:273615/250‑1 (MQ=255)
         tcacgtaatgccatccccccggggccgtaagccagccccagacgtagcagagttgcagcatcacgaatttcgcggcggcgggttagagccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATcc                                                                                                                                                                                                                                            <  1:91604‑M1/18‑1 (MQ=255)
          cacgtaatgccatccccccggggccgtaagccatccccagacgtagcagagttgcagcatcacgaatttcgcggcggcgggttagagccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcagcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATcc                                                                                                                                                                                                                                            >  2:163450‑M1/233‑250 (MQ=255)
          aTAGTGTGATAGCGTCGCGCCTGATGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCCGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTACGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgct                                                                                                                                                                                                                                           >  1:46517‑M1/1‑240 (MQ=255)
             gtaatgacatccccccggggccgtaagccagccccagacgtagcagagttgcagcatcacgaatttcgcggcggcgggttagagccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTggc                                                                                                                                                                                                                                        >  1:97525‑M1/230‑251 (MQ=255)
                 gATAGCGTCGCGACTGAGGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTAGTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGGGGATGATATGCTCGGCGCTACCGTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccagaagcgctaacttaa                                                                                                                                                                                                                                    <  2:145933‑M1/251‑19 (MQ=255)
                  aTAGCGTCGCGCCTGATGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaactta                                                                                                                                                                                                                                     >  1:148658‑M1/1‑232 (MQ=255)
                      cGTCGCGCCTGATGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCTCTTGCGGGGCGATCCCAccataagcgctaacttaagggtt                                                                                                                                                                                                                               <  2:138070‑M1/251‑24 (MQ=255)
                       gTCGCGCCTGATGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttg                                                                                                                                                                                                                              <  1:113383‑M1/251‑25 (MQ=255)
                         cgcgCCTGATGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGAGCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaa                                                                                                                                                                                                                            <  2:76852‑M1/251‑27 (MQ=255)
                             ggggccgtaagccagccccagacgtagcagagttgcaccatcacgcactccgcggcggcgggatagagccccggaattacgtgccgacgtatcaaattcttcgcgcttaccaatatgggcccgaattgctgcccagttatcgcgagagtaattccacggcacgttaaataatatcaggcgtaataccacaacccttacgttagcgcttatgggCGATCCCATCCTCCATCCTGGCGGCTGTAAAGTCTccg                                                                                                                                                                                                                        <  1:202591‑M1/38‑1 (MQ=255)
                                      gATGGCGCTGGAGGCGGCACGTCAGGTCAGCGGGCAGACGCCAACGGTGGATAACTCGGCACTGTACAAACAGATCAAACATTTGTTGCAGCAAGAACCGTTATGCAGCGGTAAACCACAGCTGCGCGTTCACCCGGATGAGCTGCAACGTGTGGATGATATGCTCGGCTCTGCCTTAAGTTTGCATGGCTGTCTCTTGCGGGGTGATTCCAtcataagcgctaacttaagggttgaaccatctgaagaat                                                                                                                                                                                                               <  2:291639‑M1/251‑40 (MQ=255)
                                               cagacgtagcagagttgcagcatcccgaatttcgcggcggcgggttagagccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCACCCTGGCGGCGGTAAAGTCTCCGCCGATGAAGGCGATCTCg                                                                                                                                                                                                      >  2:91604‑M1/196‑251 (MQ=255)
                                                agacgtagcagagttgcagcatcacgaatttcgcggcggcgggttagagccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGa                                                                                                                                                                                                     >  1:77786‑M1/195‑251 (MQ=255)
                                                  ggcggcACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcgg                                                                                                                                                                                                   >  1:194694‑M1/1‑200 (MQ=255)
                                                    gtagcagagttgcagcatcacgaatttcgcggcggcgggttagagccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGcc                                                                                                                                                                                                 <  1:73143‑M1/61‑1 (MQ=255)
                                                          gTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgt                                                                                                                                                                                           >  2:237015‑M1/1‑192 (MQ=255)
                                                             aGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCAGGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacgtaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaa                                                                                                                                                                                        <  2:119348‑M1/251‑63 (MQ=255)
                                                                   catcacgaatttcgcggcggcgggttagagccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGc                                                                                                                                                                                  <  2:132626‑M1/76‑1 (MQ=255)
                                                                              ccAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttc                                                                                                                                                                       <  1:124820‑M1/251‑80 (MQ=255)
                                                                                    cggcgggttagagcaccggcatttcgtgacgaaggatccagttcttcgggcttaaccatatgggccagaattgctggccagttatcgtgagagtaattcatcggcacgttaaatcatatccggcgtgataccacaaaccttaagtttgcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCCCCGATGGAAGCGGTCTCGACGCCCGTGTCGCCCCTCGCTGGCAAGAACTCTGCCg                                                                                                                                                                 <  2:38562‑M1/93‑1 (MQ=255)
                                                                                     ggcgggttagagccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGt                                                                                                                                                                <  1:65361‑M1/94‑1 (MQ=255)
                                                                                         tAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattggc                                                                                                                                                             >  2:230717‑M1/1‑161 (MQ=255)
                                                                                           aCTCGGCACTGATCAAACAGATCCGACAGTTGTTGCAGCAAGAACCGGTATTCAGCGGTAATCCACAGCTGCGCGTGCGCCCGGATGATCTGCAACGGGTGGATGATATGCTCGGCGCTACCGTAAGGTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatcttaataatgcgacgcctcggtgcctcgtgaagaggctgcctcgcgtttttcaattgcgttt                                                                                                                                                          <  2:27107‑M1/251‑93 (MQ=255)
                                                                                             ccgGCACTGATCAAACGTATCCAACAGTGGATGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGTATGATCTGCAACGTGGGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCGGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgagccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttg                                                                                                                                                        <  2:8896‑M1/250‑95 (MQ=255)
                                                                                              cGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgctttcttcaattgcgttttgt                                                                                                                                                       <  1:80602‑M1/251‑96 (MQ=255)
                                                                                               agccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCAc                                                                                                                                                      >  1:132626‑M1/148‑251 (MQ=255)
                                                                                                 ccccggcgttccgggccgaagtagccagttcttggggcttaccaataggggccagaattgcggaccggttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCCCCCTCCACCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACGCTGCCGTCTGGCAGCACCa                                                                                                                                                    >  2:58542‑M1/146‑251 (MQ=255)
                                                                                                     gATCAAACAGATCCAACAGTTGGTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctg                                                                                                                                                 <  2:117049‑M1/250‑102 (MQ=255)
                                                                                                       cattacgtgccgcagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtactaccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCt                                                                                                                                                                                                                                           <  2:35807‑M1/19‑1 (MQ=255)
                                                                                                       cattacgtgccgaagtatccagttcgtcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCt                                                                                                                                                                                                                                           >  1:35807‑M1/140‑158 (MQ=255)
                                                                                                          tacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAgtggtg                                                                                                                                           <  1:215499‑M1/115‑1 (MQ=255)
                                                                                                                  cAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcacttgcgttttgtaggctgtcagggatactgtc                                                                                                                                   >  2:34948‑M1/1‑136 (MQ=255)
                                                                                                                          ccgttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaccccttaagttagcgcttatgggCGATCCCACCCGCCATCCGGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCt                                                                                                                           >  2:73143‑M1/121‑251 (MQ=255)
                                                                                                                             gcagcaAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatgg                                                                                                                         <  1:27963‑M1/250‑126 (MQ=255)
                                                                                                                               agcaAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccc                                                                                                                      >  2:93825‑M1/1‑123 (MQ=255)
                                                                                                                                    gAACCGTTATGCAGCGGTAAACCACGGCTGCGCGTGCGCCCGGATGATCTGCAACGTGTGGATGATATGCGCGGCGCTACCTTAAGTGTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcggtaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcaaggatactttcccacgaatggccacctgt                                                                                                                 <  2:132478‑M1/251‑134 (MQ=255)
                                                                                                                                           tATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactggcccacgaatggccaccggtaagctc                                                                                                           <  2:254029‑M1/250‑140 (MQ=255)
                                                                                                                                                  cGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgac                                                                                                   <  1:237015‑M1/251‑148 (MQ=255)
                                                                                                                                                       aaCCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacgtaagggttgaaccatctgaagaatgcgacgcctcggtgccgcgttaagacgatgcctcgcgttcttcaattgcggtttgtaggctgtcagggatactgtcccacgaatggcaacctgtaagctccagatgaccattt                                                                                              <  2:243120‑M1/251‑153 (MQ=255)
                                                                                                                                                         attgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGCACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACttt                                                                                            <  2:305729‑M1/162‑1 (MQ=255)
                                                                                                                                                         attgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACttt                                                                                            <  1:51515‑M1/162‑1 (MQ=255)
                                                                                                                                                               gaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagtgagcgcttaggggCGATCCCCCCCCCCATCCGGGCGGCTGGAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGa                                                                                                                                                 >  2:53159‑M1/84‑192 (MQ=255)
                                                                                                                                                               gaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagctagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCaggc                                                                                                                                                 <  1:53159‑M1/109‑2 (MQ=255)
                                                                                                                                                                  cgcgTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCTCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctc                                                                                   <  2:200888‑M1/251‑164 (MQ=255)
                                                                                                                                                                   gcgTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctcc                                                                                  >  1:167088‑M1/1‑87 (MQ=255)
                                                                                                                                                                      tatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATgg                                                                               <  1:7175‑M1/175‑1 (MQ=255)
                                                                                                                                                                        cACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctccacaac                                                                             <  1:286451‑M1/251‑170 (MQ=255)
                                                                                                                                                                            gagagtaattcttcggcacgctaaatcaaatcaggcgaaatcccacatccctaaagttagctcttatgggGCATACCACCCTCCATCCTGGCGGCTGAAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGt                                                                         >  2:71774‑M1/71‑251 (MQ=255)
                                                                                                                                                                            cGGATGATCTGCATCGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctccacaacgagt                                                                         <  2:105364‑M1/251‑174 (MQ=255)
                                                                                                                                                                            cGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgctacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaatctccagatgaccatttttgttattctccacaacgagt                                                                         <  1:201814‑M1/251‑174 (MQ=255)
                                                                                                                                                                              gatgatCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttcttctccacaacgagtt                                                                        >  2:82619‑M1/1‑76 (MQ=255)
                                                                                                                                                                                       atcggcacgttaaatcatatcaggcgtaatcccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGATAACCATGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGt                                                               <  2:117708‑M1/191‑1 (MQ=255)
                                                                                                                                                                                        aaCGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctccacaacgagttagttcttcttt                                                             <  2:148658‑M1/251‑186 (MQ=255)
                                                                                                                                                                                               ggATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctccacaacgagttagttcttcttttcggat                                                       <  1:140028‑M1/250‑192 (MQ=255)
                                                                                                                                                                                                 atgatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctccacaacgagttagttcttcttttcggatccg                                                    <  2:193402‑M1/251‑195 (MQ=255)
                                                                                                                                                                                                    atatGCTCGGCGCTCCCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctccacaacgagttagttcttcttttcggatccggca                                                 <  2:217129‑M1/251‑198 (MQ=255)
                                                                                                                                                                                                       atatcaggcgtaataccacaccccttaagttagcgcttatgggCGATCCCCCCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTAc                                                     >  2:214499‑M1/44‑244 (MQ=255)
                                                                                                                                                                                                       atatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTAc                                                     <  1:214499‑M1/201‑1 (MQ=255)
                                                                                                                                                                                                         atcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGAtt                                             <  2:259722‑M1/209‑1 (MQ=255)
                                                                                                                                                                                                                  aatacccccacccttaagttagcgcttatgggCGATCCCCCCCCCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGATTAACCCGCGCt                                   >  1:41304‑M1/33‑251 (MQ=255)
                                                                                                                                                                                                                  aataccacaacccttaatttagcgcttatgggCGATCCCACCCTCCATCCGGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACGTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGATTAACCCGCGCt                                   >  2:200011‑M1/33‑251 (MQ=255)
                                                                                                                                                                                                                       cacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGATTAACCCGCGCTACCgg                              <  2:64016‑M1/224‑1 (MQ=255)
                                                                                                                                                                                                                          aacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTa                                                                                                              <  2:213317‑M1/144‑1 (MQ=255)
                                                                                                                                                                                                                          aacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTa                                                                                                              >  1:213317‑M1/25‑168 (MQ=255)
                                                                                                                                                                                                                           ccccttaattgagcgttgaggggCGATCCCCCCCTCCACCCTGGCGGCGGTAAAGCTTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGATTAACCCGCGCTACCGGGCTg                          <  2:239402/232‑1 (MQ=255)
                                                                                                                                                                                                                             gCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctccacaacgagttagttcttcttttcggatccggcacttctgggggggaaatccagcgatg                        >  2:3298‑M1/1‑29 (MQ=255)
                                                                                                                                                                                                                               ttaagttagcgcttatgggCGATCCGACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAGATCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGATTAACCCGCGCTACCGGGCTGGTGc                      <  1:83625‑M1/232‑1 (MQ=255)
                                                                                                                                                                                                                                       cgcTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctccacaacgagttagttcttcttttcggatccggcacttctgggggtgaaatccagcgatggctggattat              <  1:180079‑M1/251‑233 (MQ=255)
                                                                                                                                                                                                                                       cccgatctgggCGATCCCCCCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGATTAACCCGCGCTACCGGGCTGGTGCTGGAAGcc              >  1:218042‑M1/12‑251 (MQ=255)
                                                                                                                                                                                                                                             cGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctccacaacgagttagttcttctttt                                                            >  1:134756‑M1/1‑13 (MQ=255)
                                                                                                                                                                                                                                             cGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattcgccacaacgagttagttcttctttt                                                            <  2:134756‑M1/199‑187 (MQ=255)
                                                                                                                                                                                                                                               gggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGATTAACCCGCGCTACCGGGCTGGTGCTGGAAGCCagatcggg      >  2:218042/1‑244 (MQ=255)
                                                                                                                                                                                                                                               gggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGATTAACCCGCGCTACCGGGCTGGTGCTGGAAGCCACCGGAtt      >  1:277197/1‑251 (MQ=255)
                                                                                                                                                                                                                                                   gATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggcctcctgtaagctccagatgaccatttttgttattctccacaacgagttagttcttcttttcggatccggcacttctgggggggaaatccagcgatggctggattatgtcgtcaattaa  <  1:260204‑M1/251‑245 (MQ=255)
                                                                                                                                                                                                                                                   gATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctccacaacgagttagttcttcttttcggatccggcacttctgggggggaaatccagcgatggctggattatgtcgtcaatta   >  2:68878‑M1/1‑7 (MQ=255)
                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                    
GATGCACTTGATAGTGTGATAGCGTCGCGCCTGATGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGATTAACCCGCGCTACCGGGCTGGTGCTGGAAGCCACCGGATTACAA  >  NC_000913/2016195‑2016688

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.