Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 2,016,437 Δ2 bp :: IS186 (–) +8 bp :: Δ1 bp coding (570‑577/687 nt) fliH → flagellar biosynthesis protein FliH

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2016437 =1 (0.030)34 (1.130) 32/480 0.1 97.0% coding (570/687 nt) fliH flagellar biosynthesis protein FliH
?NC_000913 2514274 = NA (NA)noncoding (2/1345 nt) IS186 repeat region
* ? NC_000913 = 20164443 (0.100)39 (1.290) 38/482 0.0 92.6% coding (577/687 nt) fliH flagellar biosynthesis protein FliH
?NC_000913 = 2515615 NA (NA)noncoding (1343/1345 nt) IS186 repeat region

CTACCCTTGATGCACTTGATAGTGTGATAGCGTCGCGCCTGATGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGATTAACCCGCGCTACCGGGCTGGTGCTGGAAGCCACCGGATT  >  NC_000913/2016187‑2016684
                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                       
cTACCCTTGATGCACTTGATAGTGTGATAGCGTCGCGCCTGCTGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGc                                                                                                                                                                                                                                                         >  2:27963/1‑251 (MQ=255)
     cTTGATGCACTTGATAGTGTGATAGCGTCGCGCCTGCTGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATcc                                                                                                                                                                                                                                                    >  2:63080/1‑251 (MQ=255)
      atgcagtgacttcacgtaatgacatccccccggggccgtaagccagccccagacgtagcagagttgcagcatcacgaatttcgcggcggcgggttagagccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATccc                                                                                                                                                                                                                                                   <  1:262502‑M1/7‑1 (MQ=255)
        gATGCACTTGATAGTGTGATAGCGTCGCGCCTGATGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCa                                                                                                                                                                                                                                                  <  1:273615/250‑1 (MQ=255)
                 tcacgtaatgccatccccccggggccgtaagccagccccagacgtagcagagttgcagcatcacgaatttcgcggcggcgggttagagccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATcc                                                                                                                                                                                                                                        <  1:91604‑M1/18‑1 (MQ=255)
                  cacgtaatgccatccccccggggccgtaagccatccccagacgtagcagagttgcagcatcacgaatttcgcggcggcgggttagagccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcagcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATcc                                                                                                                                                                                                                                        >  2:163450‑M1/233‑250 (MQ=255)
                  aTAGTGTGATAGCGTCGCGCCTGATGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCCGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTACGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgct                                                                                                                                                                                                                                       >  1:46517‑M1/1‑240 (MQ=255)
                     gtaatgacatccccccggggccgtaagccagccccagacgtagcagagttgcagcatcacgaatttcgcggcggcgggttagagccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTggc                                                                                                                                                                                                                                    >  1:97525‑M1/230‑251 (MQ=255)
                         gATAGCGTCGCGACTGAGGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTAGTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGGGGATGATATGCTCGGCGCTACCGTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccagaagcgctaacttaa                                                                                                                                                                                                                                <  2:145933‑M1/251‑19 (MQ=255)
                          aTAGCGTCGCGCCTGATGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaactta                                                                                                                                                                                                                                 >  1:148658‑M1/1‑232 (MQ=255)
                              cGTCGCGCCTGATGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCTCTTGCGGGGCGATCCCAccataagcgctaacttaagggtt                                                                                                                                                                                                                           <  2:138070‑M1/251‑24 (MQ=255)
                               gTCGCGCCTGATGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttg                                                                                                                                                                                                                          <  1:113383‑M1/251‑25 (MQ=255)
                                 cgcgCCTGATGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGAGCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaa                                                                                                                                                                                                                        <  2:76852‑M1/251‑27 (MQ=255)
                                     ggggccgtaagccagccccagacgtagcagagttgcaccatcacgcactccgcggcggcgggatagagccccggaattacgtgccgacgtatcaaattcttcgcgcttaccaatatgggcccgaattgctgcccagttatcgcgagagtaattccacggcacgttaaataatatcaggcgtaataccacaacccttacgttagcgcttatgggCGATCCCATCCTCCATCCTGGCGGCTGTAAAGTCTccg                                                                                                                                                                                                                    <  1:202591‑M1/38‑1 (MQ=255)
                                              gATGGCGCTGGAGGCGGCACGTCAGGTCAGCGGGCAGACGCCAACGGTGGATAACTCGGCACTGTACAAACAGATCAAACATTTGTTGCAGCAAGAACCGTTATGCAGCGGTAAACCACAGCTGCGCGTTCACCCGGATGAGCTGCAACGTGTGGATGATATGCTCGGCTCTGCCTTAAGTTTGCATGGCTGTCTCTTGCGGGGTGATTCCAtcataagcgctaacttaagggttgaaccatctgaagaat                                                                                                                                                                                                           <  2:291639‑M1/251‑40 (MQ=255)
                                                       cagacgtagcagagttgcagcatcccgaatttcgcggcggcgggttagagccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCACCCTGGCGGCGGTAAAGTCTCCGCCGATGAAGGCGATCTCg                                                                                                                                                                                                  >  2:91604‑M1/196‑251 (MQ=255)
                                                        agacgtagcagagttgcagcatcacgaatttcgcggcggcgggttagagccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGa                                                                                                                                                                                                 >  1:77786‑M1/195‑251 (MQ=255)
                                                          ggcggcACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcgg                                                                                                                                                                                               >  1:194694‑M1/1‑200 (MQ=255)
                                                            gtagcagagttgcagcatcacgaatttcgcggcggcgggttagagccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGcc                                                                                                                                                                                             <  1:73143‑M1/61‑1 (MQ=255)
                                                                  gTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgt                                                                                                                                                                                       >  2:237015‑M1/1‑192 (MQ=255)
                                                                     aGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCAGGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacgtaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaa                                                                                                                                                                                    <  2:119348‑M1/251‑63 (MQ=255)
                                                                           catcacgaatttcgcggcggcgggttagagccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGc                                                                                                                                                                              <  2:132626‑M1/76‑1 (MQ=255)
                                                                                      ccAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttc                                                                                                                                                                   <  1:124820‑M1/251‑80 (MQ=255)
                                                                                            cggcgggttagagcaccggcatttcgtgacgaaggatccagttcttcgggcttaaccatatgggccagaattgctggccagttatcgtgagagtaattcatcggcacgttaaatcatatccggcgtgataccacaaaccttaagtttgcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCCCCGATGGAAGCGGTCTCGACGCCCGTGTCGCCCCTCGCTGGCAAGAACTCTGCCg                                                                                                                                                             <  2:38562‑M1/93‑1 (MQ=255)
                                                                                             ggcgggttagagccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGt                                                                                                                                                            <  1:65361‑M1/94‑1 (MQ=255)
                                                                                                 tAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattggc                                                                                                                                                         >  2:230717‑M1/1‑161 (MQ=255)
                                                                                                   aCTCGGCACTGATCAAACAGATCCGACAGTTGTTGCAGCAAGAACCGGTATTCAGCGGTAATCCACAGCTGCGCGTGCGCCCGGATGATCTGCAACGGGTGGATGATATGCTCGGCGCTACCGTAAGGTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatcttaataatgcgacgcctcggtgcctcgtgaagaggctgcctcgcgtttttcaattgcgttt                                                                                                                                                      <  2:27107‑M1/251‑93 (MQ=255)
                                                                                                     ccgGCACTGATCAAACGTATCCAACAGTGGATGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGTATGATCTGCAACGTGGGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCGGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgagccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttg                                                                                                                                                    <  2:8896‑M1/250‑95 (MQ=255)
                                                                                                      cGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgctttcttcaattgcgttttgt                                                                                                                                                   <  1:80602‑M1/251‑96 (MQ=255)
                                                                                                       agccccggcattacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCAc                                                                                                                                                  >  1:132626‑M1/148‑251 (MQ=255)
                                                                                                         ccccggcgttccgggccgaagtagccagttcttggggcttaccaataggggccagaattgcggaccggttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCCCCCTCCACCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACGCTGCCGTCTGGCAGCACCa                                                                                                                                                >  2:58542‑M1/146‑251 (MQ=255)
                                                                                                             gATCAAACAGATCCAACAGTTGGTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctg                                                                                                                                             <  2:117049‑M1/250‑102 (MQ=255)
                                                                                                               cattacgtgccgcagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtactaccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCt                                                                                                                                                                                                                                       <  2:35807‑M1/19‑1 (MQ=255)
                                                                                                               cattacgtgccgaagtatccagttcgtcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCt                                                                                                                                                                                                                                       >  1:35807‑M1/140‑158 (MQ=255)
                                                                                                                  tacgtgccgaagtatccagttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAgtggtg                                                                                                                                       <  1:215499‑M1/115‑1 (MQ=255)
                                                                                                                          cAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcacttgcgttttgtaggctgtcagggatactgtc                                                                                                                               >  2:34948‑M1/1‑136 (MQ=255)
                                                                                                                                  ccgttcttcgggcttaccaatatgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaccccttaagttagcgcttatgggCGATCCCACCCGCCATCCGGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCt                                                                                                                       >  2:73143‑M1/121‑251 (MQ=255)
                                                                                                                                     gcagcaAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatgg                                                                                                                     <  1:27963‑M1/250‑126 (MQ=255)
                                                                                                                                       agcaAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccc                                                                                                                  >  2:93825‑M1/1‑123 (MQ=255)
                                                                                                                                            gAACCGTTATGCAGCGGTAAACCACGGCTGCGCGTGCGCCCGGATGATCTGCAACGTGTGGATGATATGCGCGGCGCTACCTTAAGTGTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcggtaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcaaggatactttcccacgaatggccacctgt                                                                                                             <  2:132478‑M1/251‑134 (MQ=255)
                                                                                                                                                   tATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactggcccacgaatggccaccggtaagctc                                                                                                       <  2:254029‑M1/250‑140 (MQ=255)
                                                                                                                                                          cGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgac                                                                                               <  1:237015‑M1/251‑148 (MQ=255)
                                                                                                                                                               aaCCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacgtaagggttgaaccatctgaagaatgcgacgcctcggtgccgcgttaagacgatgcctcgcgttcttcaattgcggtttgtaggctgtcagggatactgtcccacgaatggcaacctgtaagctccagatgaccattt                                                                                          <  2:243120‑M1/251‑153 (MQ=255)
                                                                                                                                                                 attgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGCACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACttt                                                                                        <  2:305729‑M1/162‑1 (MQ=255)
                                                                                                                                                                 attgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACttt                                                                                        <  1:51515‑M1/162‑1 (MQ=255)
                                                                                                                                                                       gaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagtgagcgcttaggggCGATCCCCCCCCCCATCCGGGCGGCTGGAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGa                                                                                                                                             >  2:53159‑M1/84‑192 (MQ=255)
                                                                                                                                                                       gaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagctagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCaggc                                                                                                                                             <  1:53159‑M1/109‑2 (MQ=255)
                                                                                                                                                                          cgcgTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCTCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctc                                                                               <  2:200888‑M1/251‑164 (MQ=255)
                                                                                                                                                                           gcgTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctcc                                                                              >  1:167088‑M1/1‑87 (MQ=255)
                                                                                                                                                                              tatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATgg                                                                           <  1:7175‑M1/175‑1 (MQ=255)
                                                                                                                                                                                cACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctccacaac                                                                         <  1:286451‑M1/251‑170 (MQ=255)
                                                                                                                                                                                    gagagtaattcttcggcacgctaaatcaaatcaggcgaaatcccacatccctaaagttagctcttatgggGCATACCACCCTCCATCCTGGCGGCTGAAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGt                                                                     >  2:71774‑M1/71‑251 (MQ=255)
                                                                                                                                                                                    cGGATGATCTGCATCGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctccacaacgagt                                                                     <  2:105364‑M1/251‑174 (MQ=255)
                                                                                                                                                                                    cGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgctacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaatctccagatgaccatttttgttattctccacaacgagt                                                                     <  1:201814‑M1/251‑174 (MQ=255)
                                                                                                                                                                                      gatgatCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttcttctccacaacgagtt                                                                    >  2:82619‑M1/1‑76 (MQ=255)
                                                                                                                                                                                               atcggcacgttaaatcatatcaggcgtaatcccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGATAACCATGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGt                                                           <  2:117708‑M1/191‑1 (MQ=255)
                                                                                                                                                                                                aaCGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctccacaacgagttagttcttcttt                                                         <  2:148658‑M1/251‑186 (MQ=255)
                                                                                                                                                                                                       ggATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctccacaacgagttagttcttcttttcggat                                                   <  1:140028‑M1/250‑192 (MQ=255)
                                                                                                                                                                                                         atgatATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctccacaacgagttagttcttcttttcggatccg                                                <  2:193402‑M1/251‑195 (MQ=255)
                                                                                                                                                                                                            atatGCTCGGCGCTCCCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctccacaacgagttagttcttcttttcggatccggca                                             <  2:217129‑M1/251‑198 (MQ=255)
                                                                                                                                                                                                               atatcaggcgtaataccacaccccttaagttagcgcttatgggCGATCCCCCCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTAc                                                 >  2:214499‑M1/44‑244 (MQ=255)
                                                                                                                                                                                                               atatcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTAc                                                 <  1:214499‑M1/201‑1 (MQ=255)
                                                                                                                                                                                                                 atcaggcgtaataccacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGAtt                                         <  2:259722‑M1/209‑1 (MQ=255)
                                                                                                                                                                                                                          aatacccccacccttaagttagcgcttatgggCGATCCCCCCCCCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGATTAACCCGCGCt                               >  1:41304‑M1/33‑251 (MQ=255)
                                                                                                                                                                                                                          aataccacaacccttaatttagcgcttatgggCGATCCCACCCTCCATCCGGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACGTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGATTAACCCGCGCt                               >  2:200011‑M1/33‑251 (MQ=255)
                                                                                                                                                                                                                               cacaacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGATTAACCCGCGCTACCgg                          <  2:64016‑M1/224‑1 (MQ=255)
                                                                                                                                                                                                                                  aacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTa                                                                                                          <  2:213317‑M1/144‑1 (MQ=255)
                                                                                                                                                                                                                                  aacccttaagttagcgcttatgggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTa                                                                                                          >  1:213317‑M1/25‑168 (MQ=255)
                                                                                                                                                                                                                                   ccccttaattgagcgttgaggggCGATCCCCCCCTCCACCCTGGCGGCGGTAAAGCTTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGATTAACCCGCGCTACCGGGCTg                      <  2:239402/232‑1 (MQ=255)
                                                                                                                                                                                                                                     gCATGGCTGGCGCTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctccacaacgagttagttcttcttttcggatccggcacttctgggggggaaatccagcgatg                    >  2:3298‑M1/1‑29 (MQ=255)
                                                                                                                                                                                                                                       ttaagttagcgcttatgggCGATCCGACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAGATCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGATTAACCCGCGCTACCGGGCTGGTGc                  <  1:83625‑M1/232‑1 (MQ=255)
                                                                                                                                                                                                                                               cgcTTGCGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctccacaacgagttagttcttcttttcggatccggcacttctgggggtgaaatccagcgatggctggattat          <  1:180079‑M1/251‑233 (MQ=255)
                                                                                                                                                                                                                                               cccgatctgggCGATCCCCCCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGATTAACCCGCGCTACCGGGCTGGTGCTGGAAGcc          >  1:218042‑M1/12‑251 (MQ=255)
                                                                                                                                                                                                                                                     cGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattctccacaacgagttagttcttctttt                                                        >  1:134756‑M1/1‑13 (MQ=255)
                                                                                                                                                                                                                                                     cGGGGCGATCCCAccataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgttttgtaggctgtcagggatactgtcccacgaatggccacctgtaagctccagatgaccatttttgttattcgccacaacgagttagttcttctttt                                                        <  2:134756‑M1/199‑187 (MQ=255)
                                                                                                                                                                                                                                                       gggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGATTAACCCGCGCTACCGGGCTGGTGCTGGAAGCCagatcggg  >  2:218042/1‑244 (MQ=255)
                                                                                                                                                                                                                                                       gggCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGATTAACCCGCGCTACCGGGCTGGTGCTGGAAGCCACCGGAtt  >  1:277197/1‑251 (MQ=255)
                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                       
CTACCCTTGATGCACTTGATAGTGTGATAGCGTCGCGCCTGATGCAGATGGCGCTGGAGGCGGCACGTCAGGTCATCGGTCAGACGCCAACGGTGGATAACTCGGCACTGATCAAACAGATCCAACAGTTGTTGCAGCAAGAACCGTTATTCAGCGGTAAACCACAGCTGCGCGTGCACCCGGATGATCTGCAACGTGTGGATGATATGCTCGGCGCTACCTTAAGTTTGCATGGCTGGCGCTTGCGGGGCGATCCCACCCTCCATCCTGGCGGCTGTAAAGTCTCCGCCGATGAAGGCGATCTCGACGCCAGTGTCGCCACTCGCTGGCAAGAACTCTGCCGTCTGGCAGCACCAGGAGTGGTGTAATGACCACGCGCCTGACTCGCTGGCTAACCACGCTGGATAACTTTGAAGCCAAAATGGCGCAGTTGCCTGCGGTACGTCGCTACGGGCGATTAACCCGCGCTACCGGGCTGGTGCTGGAAGCCACCGGATT  >  NC_000913/2016187‑2016684

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.