Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,090,238	688 bp→GGGGATCTTGAAGTTCCTATTCCGAAGTTCCTATTCTCTAGAAAGTATAGGAACTTCAGAGCGCTTTTGAAGCT		[yggI]–[endA]	[yggI], [endA]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3090238	3090925	688	73 [0]	[0] 78	[yggI]–[endA]	[yggI],[endA]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3090237	0 (0.000)	56 (1.410) +GGGGATCTTGAAGTTCCTATTCCGAAGTTCCTATTCTCTAGAAAGTATAGGAACTTCAGAGCGCTTTTGAAGCT	50/334	0.1	100%	coding (483/498 nt)	yggI	protein YggI
	?	NC_000913	3090926 =	0 (0.000)					coding (580/708 nt)	endA	DNA‑specific endonuclease I

GTCTATCGCAAGATGGAAAGCGATATGCATAACCTGCAGCCGTCAGTCGGTGAGGTGAATGGCGATCGCGGCAACTTTATGTACAGCCAGTGGAATGGCGGTGAAGGCCAGTACGGTCAATGCGCCATGAAGGTCGATTTCAAAGAAAAAGCTGCCGAACCACCAGCGCGTGCACGCGGTGCCATTGCGCGCACCTACTTCTATATGCGCGACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTG  >  NC_000913/3090677‑3091169                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                    ggaaaccgtgctggggtttcccgcccgtcttacgcagctgttcgaacggcaatcggtgcgtcgcaacgcctctcccttccgctgcaagtgccaggagtatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgtttttgaagctct                                                                                                                                                                                                                                                    <  2:301125‑M2/2‑1 (MQ=255)            tgggtgttcccgcccgtcgtacgcatcagttcgaactgcaatccgtgcgtcgcaacaccttcccctaccgctgcaagtgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCAt                                                                                                                                                                                                                                         >  1:215506‑M2/239‑251 (MQ=255)             gggtgtcccctcccttcgtacgcacaaggtcaaactgcaatccgtgcgtcgcacccccttcccctcccgctgcaagggccaggagcatcagcttcccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCa                                                                                                                                                                                                                                          <  2:348884‑M2/12‑1 (MQ=255)                   tcccgcccgtcgtacgcatcagttcgaactgcaatccgtgcatcgcaacaccttcccctaccgctgcaagtgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggctcttgaagttcctattccgaagttcctattctctcgaatgtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACa                                                                                                                                                                                                                                   >  2:292245‑M2/232‑250 (MQ=255)                    cccgcccgtcgtacgcatcagttcgaactgcaatccgtgcgtcgcaacaccttcccctaccgctgcaagtgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACa                                                                                                                                                                                                                                   >  1:595763‑M2/231‑249 (MQ=255)                        cccgtcgtacgcatcagttcgaactgcaatccgtgcgtcgcaacaccttcccctaccgctgcaagtgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGt                                                                                                                                                                                                                             <  1:2234‑M2/25‑1 (MQ=255)                             cgtacgcatcagttcgaactgcaatccgtgcgtcgcaacaccttcccctaccgctgcaagtgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACTCATGGAACAAGATGTATCCg                                                                                                                                                                                                                        >  2:489674‑M2/222‑251 (MQ=255)                              gtacgcatcagttcgaactgcaatccgagcgtcgcaacaccttcccctaccgctgcccgtgcccggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggggaacagggggatcttgaagttcgtattccgaatgtcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCgg                                                                                                                                                                                                                       >  2:35017‑M2/221‑251 (MQ=255)                                acgcatcagttcgaactgcaatccgtgcgtcgcaaccccttcccctaccgctgcaagggccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGtt                                                                                                                                                                                                                     <  1:459553‑M2/33‑1 (MQ=255)                                acgcatcagtgcgaactgcaatccgtgcgtcgcaacaccttcccctaccgctgcaagtgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGtt                                                                                                                                                                                                                     <  1:416513‑M2/33‑1 (MQ=255)                                   catcagttcgaactgcaatccgtgcgtcgcaacaccttcccctaccgctgcaagtgccaggagcatcagcttaccgtacgccgccataatagcgtagatcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgacgtccctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTAcc                                                                                                                                                                                                                  >  1:345592‑M2/216‑251 (MQ=255)                                         ttcgaactgcaatccgtgcgtcgcaacaccttcccctaccgctgcaagtgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTgg                                                                                                                                                                                                            >  1:199439‑M2/210‑251 (MQ=255)                                           cgaacttcaatcctggcgtcgcaaccccttcccctcccgctgcaagtgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTggg                                                                                                                                                                                                           <  2:444192‑M2/43‑1 (MQ=255)                                              actgcaatccgtgcgtcgcaacaccttcccctaccgctgcaagtgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTg                                                                                                                                                                                                       <  1:461288‑M2/47‑1 (MQ=255)                                               ctgcaatccgtgcgtcgcaacaccttcccctaccgctgcaagtgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGc                                                                                                                                                                                                      >  1:382878‑M2/204‑251 (MQ=255)                                                 gcactccgtgcgccgcaacaccctcccctaccgctgcaagtgccaggggcatcagcttaccgtacgccgccataatcgcgtagttcggggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaaggataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGa                                                                                                                                                                                                    <  2:357749‑M2/50‑1 (MQ=255)                                                   aatccgtgcgtcgcaacaccttcccctaccgctgcaagtgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAgc                                                                                                                                                                                                  >  2:477‑M2/200‑251 (MQ=255)                                                      ccgtgcgtcgcaacaccttcccctaccgctgcaagtgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGcgcg                                                                                                                                                                                               >  1:311619‑M2/197‑251 (MQ=255)                                                        gtgcgtcgcaacaccttcccctaccgctgcaagtgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGAt                                                                                                                                                                                             >  1:472581‑M2/195‑251 (MQ=255)                                                         tgcgtcgcaacaccttcccctaccgctgcaagtgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaaccgggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCa                                                                                                                                                                                                                                               >  1:258843‑M2/194‑200 (MQ=255)                                                                     ccttcccctcccgctgcaagtgccaggagcatcagcttaccgtacgccgccatcatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgcacagggggatcttgaagttcctattccgaagttcctattctctagaaagtctaggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGCGCGCGATGAACGCATcgcg                                                                                                                                                                                 >  2:548796‑M2/182‑250 (MQ=255)                                                                      cttcccctaccgctgcaagtgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGCGTGCGAGCGCGATGAACGCATCGCGa                                                                                                                                                                                >  2:360082‑M2/181‑250 (MQ=255)                                                                       ttcccctaccgctgcaagtgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgcggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcatattctctagaaagtatcggaacttcagagcgcttttgaagctATGTTCAACGCATGGAACAAGATGTATCCGGTTAACGACTGGGAGTGCGAACGCGATGCACGCATCGCGa                                                                                                                                                                                >  1:553485‑M2/180‑249 (MQ=255)                                                                        tcccctaccgctgaaagtgccaggggcattagcgtaccgtactccgccataatcgcgtagttcgtggcgaggccgtctagcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagtttctattctctagaaagtataggaacttcagagcgcttttgaagctCTGGTCAACGCATGGAACAAGATGTATCCGGTTACCGACGTGGAGTGCGAGCGCGATGAACGCATCGCGAAg                                                                                                                                                                              <  1:584998‑M2/72‑1 (MQ=255)                                                                             cccctcgtcaagtgccgggggcatcactttccgttcgcccgccataatcgcgtatttcgtggcgaggccgtctatcgctgtgtgcactgcggtgaacagggggatcttgaagttcctattcctaagttcctattctctagaaagtataggaactgcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGAATCCGGTTAACGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAg                                                                                                                                                                        <  2:343656‑M2/78‑1 (MQ=255)                                                                                       agggccaggagcatcagcttaccgtccgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgggttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCTAAGGTGCAGGGCAATCATa                                                                                                                                                              <  2:594473‑M2/88‑1 (MQ=255)                                                                                         tgccaggagcatcagcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAAc                                                                                                                                                            >  1:377749‑M2/162‑251 (MQ=255)                                                                                            caggagcagcagcttacctgacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCg                                                                                                                                                         <  2:335277‑M2/93‑1 (MQ=255)                                                                                                   atcagcttaccgtacgccgccataatcgagaagttcgtggcgaggccgtctatcgctgtgttcaatgcggtgaacagggggatcttgaagttcctattccgaagttcctcttctctagacagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAacacg                                                                                                                                                                                                                                 >  2:357983‑M2/152‑170 (MQ=255)                                                                                                   atcagctgaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAg                                                                                                                                                                                                                                 <  1:357983‑M2/21‑1 (MQ=255)                                                                                                      agcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAAc                                                                                                                                               <  2:199439‑M2/103‑1 (MQ=255)                                                                                                       gcttaccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAAcg                                                                                                                                              <  2:447515‑M2/104‑1 (MQ=255)                                                                                                         ttaccgcacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAAcgcg                                                                                                                                            >  1:161303‑M2/146‑251 (MQ=255)                                                                                                           cccgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCg                                                                                                                                                         <  2:388552‑M2/93‑1 (MQ=255)                                                                                                           accgtacgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCg                                                                                                                                                         >  1:388552‑M2/144‑236 (MQ=255)                                                                                                                acgccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGcc                                                                                                                                      >  1:406135‑M2/139‑250 (MQ=255)                                                                                                                   ccgccataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGgc                                                                                                                                  <  1:369420‑M2/116‑1 (MQ=255)                                                                                                                   ccgccataagcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCTCTAAGGTGCAGGGCAATCATAACCCTTATGTGCAACGCGCTTGCCAGgc                                                                                                                                  <  2:297016‑M2/116‑1 (MQ=255)                                                                                                                       cataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATcgcg                                                                                                                                                                                 >  2:267479‑M2/132‑200 (MQ=255)                                                                                                                       cataatcgcgtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATcgcg                                                                                                                                                                                 <  1:267479‑M2/69‑1 (MQ=255)                                                                                                                                gtagttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTaa                                                                                                                     <  2:375555‑M2/129‑1 (MQ=255)                                                                                                                                gtagttcggggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTaa                                                                                                                     <  2:311619‑M2/129‑1 (MQ=255)                                                                                                                                  agttcgtggcgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAAc                                                                                                                    <  2:341308‑M2/130‑1 (MQ=255)                                                                                                                                      cgtggcgaggccgtctatcgctgtgttcactgccgtgaacagggggatcttgaagttcctattccgaagatcctattctctagaaagtataggaaattcagagcgcttttgcagctCTGTTCAACGCCTGGACCAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCAAGGCGCGAAAGAGATAACCTac                                                                                                                >  1:343018‑M2/117‑250 (MQ=255)                                                                                                                                           cgaggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGc                                                                                                          <  1:78884‑M2/140‑1 (MQ=255)                                                                                                                                              ggccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCggg                                                                                                       >  1:325545‑M2/109‑251 (MQ=255)                                                                                                                                                ccgtctatcgctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCGAGGCGCGAAAGAGCTAACCTACACTAGCGGGAt                                                                                                     <  1:548796‑M2/145‑1 (MQ=255)                                                                                                                                                     tatcgccgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCttt                                                                                                >  1:154682‑M2/102‑251 (MQ=255)                                                                                                                                                         gctgtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGt                                                                                            <  1:58667‑M2/154‑1 (MQ=255)                                                                                                                                                            gtgttcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTa                                                                                          <  2:39351‑M2/156‑1 (MQ=255)                                                                                                                                                            gtgttcacagcggtgaacagggggatcttgaagttcctatgccgaaggtcctattctctagaaagtataggaacttcagagcgctgttgaagcgCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCATGGCAATCATAACCCGTATGTGCAACGCGTTTGCCAGGCGCGAAATAGCTAACCTACACTAGCGTGATTCTTTTTGTTa                                                                                          <  1:476589‑M2/156‑1 (MQ=255)                                                                                                                                                                tcactgcggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAAccc                                                                                      <  2:382878‑M2/160‑1 (MQ=255)                                                                                                                                                                      cggtgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTGTTTGTTAACCCCTAcccc                                                                               <  2:215506‑M2/167‑1 (MQ=255)                                                                                                                                                                         tgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCAcg                                                                            >  2:436789‑M2/82‑251 (MQ=255)                                                                                                                                                                         tgaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCAcg                                                                            >  1:166664‑M2/82‑251 (MQ=255)                                                                                                                                                                          gaacagggggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCAcgc                                                                           >  1:306984‑M2/81‑251 (MQ=255)                                                                                                                                                                                gtggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGGTACCGGCTGGGAGTGCGAGCGCGATGAATGCTGCGGGAAGGTGTAGGGCAATCATAACCCGTATTTGCAACGCTCTTGCCAGGCTCGAAag                                                                                                                           <  2:547500‑M2/123‑1 (MQ=255)                                                                                                                                                                                ggggatcttgaagttcctattccgaagttcctattctatagacagtctagcaacttcagagcgcttttgaagctCTGTTCAACGCCTGGAACAAGATGTATCCGGTTACCGACTGGGCGTGCGAGCGCGATGACCGCATCGCGAAGGTGCAGGGCCATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAag                                                                                                                           >  1:547500‑M2/75‑197 (MQ=255)                                                                                                                                                                                 gggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAAc                                                                    <  2:403626‑M2/178‑1 (MQ=255)                                                                                                                                                                                  ggatcttgaagttcctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAAcc                                                                   <  1:505924‑M2/179‑1 (MQ=255)                                                                                                                                                                                         gaagtccctattccgaagttcctattctctagaaagcataggcccttccgagcgcttttgaagctCTGTTCAACGCATGGCACAAGATGTATCCGGTTACCGACTCGGCGTGCGAGCGCAATGAACGCACCGAGAAGGTGCAGGGCAATCATAACCCGTCTGTCCACCGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGCTTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTggg                                                            >  1:496164‑M2/66‑251 (MQ=255)                                                                                                                                                                                               cctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAAc                                                                                                                                                                                         <  2:177278‑M2/61‑1 (MQ=255)                                                                                                                                                                                               cctattccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAAc                                                                                                                                                                                         >  1:177278‑M2/60‑120 (MQ=255)                                                                                                                                                                                                  attccgaagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAaga                                                                                                                          <  1:415117‑M2/124‑1 (MQ=255)                                                                                                                                                                                                        aagttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGAtt                                             >  1:60562‑M2/51‑251 (MQ=255)                                                                                                                                                                                                         agttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACt                                                                                                             <  1:208950‑M2/137‑1 (MQ=255)                                                                                                                                                                                                         agttcctattctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACt                                                                                                             >  2:208950‑M2/50‑186 (MQ=255)                                                                                                                                                                                                         agttcctattcgctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGAGGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGGGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTGTGTTAACCCCTACCCCACGCGTACAACCTCGTGGGTAGACGACGCGGAttt                                            <  1:411169‑M2/202‑1 (MQ=255)                                                                                                                                                                                                                  tctctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCTTACAACCGCGTGGGGAGACGACGCGGATTTTAAACTAt                                    <  1:155451‑M2/210‑1 (MQ=255)                                                                                                                                                                                                                   atctagaaagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGGGACGAAGCGGATTTTTAACTATGc                                  >  2:223247‑M2/40‑251 (MQ=255)                                                                                                                                                                                                                          aagtataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATccc                           >  2:295202‑M2/33‑251 (MQ=255)                                                                                                                                                                                                                             tataggaacttcagagcgcttttgaagctCTGTTCAACACATGGAACAAGCTGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGCAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCCGGCGCGACCGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGTGACGACGCGGATTTTTAACTATGCGTCTCCCCCg                        >  2:382889‑M2/30‑251 (MQ=255)                                                                                                                                                                                                                              ataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCg                        <  1:184714‑M2/222‑1 (MQ=255)                                                                                                                                                                                                                              ataggaacttcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCAGAACCCGTATGTGCAACGTGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGTGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCg                        <  1:418765‑M2/222‑1 (MQ=255)                                                                                                                                                                                                                              ataggaacttcagagcgcttttgaagctCTGTTCAACGCAGGGAACAATATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTGGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTTGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCg                        <  2:454516‑M2/222‑1 (MQ=255)                                                                                                                                                                                                                                       tcagagcgcttttgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTatc                <  2:377749‑M2/230‑1 (MQ=255)                                                                                                                                                                                                                                                   tgaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTg  >  1:547151‑M2/8‑251 (MQ=255)                                                                                                                                                                                                                                                    gaagctCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTg  <  1:360082‑M2/244‑1 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                    GTCTATCGCAAGATGGAAAGCGATATGCATAACCTGCAGCCGTCAGTCGGTGAGGTGAATGGCGATCGCGGCAACTTTATGTACAGCCAGTGGAATGGCGGTGAAGGCCAGTACGGTCAATGCGCCATGAAGGTCGATTTCAAAGAAAAAGCTGCCGAACCACCAGCGCGTGCACGCGGTGCCATTGCGCGCACCTACTTCTATATGCGCGACCAATACAACCTGACACTCTCTCGCCAGCAAACGCAGCTGTTCAACGCATGGAACAAGATGTATCCGGTTACCGACTGGGAGTGCGAGCGCGATGAACGCATCGCGAAGGTGCAGGGCAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACCGCGTGGGGAGACGACGCGGATTTTTAACTATGCGTATCCCCCGCATTTATCATCCTGAACCACTG  >  NC_000913/3090677‑3091169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑