Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,803,431 IS5 (–) +4 bp intergenic (‑861/‑1731) thrS ← / → yniD threonine‑‑tRNA ligase/uncharacterized protein YniD

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1397238NA (NA)26 (1.100) 23/496 0.2 100% noncoding (1195/1195 nt) IS5 repeat region
?NC_000913 = 1803434 0 (0.000)intergenic (‑864/‑1731) thrS/yniD threonine‑‑tRNA ligase/uncharacterized protein YniD
* ? NC_000913 1803431 =0 (0.000)19 (0.800) 18/496 0.4 100% intergenic (‑861/‑1734) thrS/yniD threonine‑‑tRNA ligase/uncharacterized protein YniD
?NC_000913 = 2102943 NA (NA)noncoding (1/1195 nt) IS5 repeat region

TTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1396997‑1397238
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGCTTTAATAGGCGTGGTTTCCAGTAATAAGGAAATGATTTCTTTTTTATAGTGTAATGTAATGAGTATATTTTCTGTATGGATGGGTGAAGTGGCAAAGTTAATGGTAAAAAGGGCAGTGGAATAACAATTTTGTGATATTTTTCGACAGTTTGCGGTAAATTCCTGAGTAACACAGTATGACAGCATCGAACTTAAGTCAGAGGTATCAAGTAGGGTGATGA  <  NC_000913/1803434‑1803209
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
TTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTTT                                                                                                                                                                                                                            >  1:61451/1‑250
      AAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTTTAATAGGC                                                                                                                                                                                                                     <  1:113517/251‑1
         AACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTTTAACTAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTTTAATAGGCGTG                                                                                                                                                                                                                  >  2:169010/1‑251
             ATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGCGAGCGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCCAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGTAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTACCTTTAATAGGCGTGGTTT                                                                                                                                                                                                              >  2:78593/1‑251
                ACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTTTAATAGGCGTGGTTTCCA                                                                                                                                                                                                           <  1:64775/251‑1
                     CTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTTTAATAGGCGTGGTTTCCAGTAAT                                                                                                                                                                                                      >  1:68918/1‑251
                     CTGGCGATGTTATTCACGCTGGACAACCTGTTTCGGGCGGACCAAATGATCCGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGACTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTTTAATAGGCGTGGTTTCCAGTAAT                                                                                                                                                                                                      >  2:24317/1‑251
                       GGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTGTAATAGGCGTGGTTTCCAGTAAT                                                                                                                                                                                                      <  1:211676/249‑1
                          gatgtttttgacgggGGCCCACCTGTTTCGGGCGGACCAAATGATACGTCCGTGGGAGAGATCTCAATCAAAACTGGGGCTAACGCCTTAAATGGCGAAGAAACGGTCTAATTAGGATGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGATTTAATCGGCGCAGTTTTCAGTAATAAGG                                                                                                                                                                                                  >  2:33248/16‑250
                                               CCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTTTAATAGGCGTTGTTTCCAGTAATAAGGAAATGATTTCTTTTTTATAGTG                                                                                                                                                                            <  1:146183/251‑1
                                                  ggTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAAGAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCAACTTCCTTAGCTTTAATAGGCGTGGTTTCCAGTAATAAGGAAATGATTTCTTTTTTATAGTGTA                                                                                                                                                                          <  2:89145/248‑1
                                                                AAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTTTAATAGGCGTGGTTTCCAGTAATAAGGAAATGATTTCTTTTTTATAGTGTAATGTAATGAGTATAT                                                                                                                                                           <  1:196838/251‑1
                                                                            gGTGGGAGAAATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCCTTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCAGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTTTAATAGGCGTGGTTTCCAGTAATAAGGAAATGATTTCTTTTTTATAGTGTAATGTAATGAGTATATTTTCTGTATGG                                                                                                                                                >  2:156613/2‑250
                                                                            AGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTTTAATAGGCGTGGTTTCCAGTAAAAAGGAAATGATTTCTTTTTTATAGTGTAATGTAATGAGTATATTTTCTGTATGGA                                                                                                                                               <  1:107271/251‑1
                                                                                 GAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTTTAATAGGCGTGGTTTCCAGTAATAAGGAAATGATTTCTTTTTTATAGTGTAATGTAATGAGTATATTTTCTGTATGGATGGGT                                                                                                                                          <  2:60046/251‑1
                                                                                                                  TAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTAAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTTTAATAGGCGTGGTTTCCAGTAATAAGGAAATGATTTCTTTTTTATAGTGTAATGTAATGAGTATATTTTCTGTATGGATGGGTGAATTGGCAAAGTTAATGGTAAAAAGGGCAG                                                                                                           <  1:203345/249‑1
                                                                                                                      TGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTTTAATAGGCGTGGTTTCCAGTAATAAGGAAATGATTTCTTTTTTATAGTGTAATGTAATGAGTATATTTTCTGTATGGATGGGTGAAGTGGCAAAGTTAATGGTAAAAAGGGCAGTGGAAT                                                                                                     >  1:74154/1‑251
                                                                                                                                                GATTCAAGGCAGTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTTTAATAGGCGTGGTTTCCAGTAATAAGGAAATGATTTCTTTTTTATAGTGTAATGTAATGAGTATATTTTCTGTATGGATGGGTGAAGTGGCAAAGTTAATGGTAAAAAGGGCAGTGGAATAACAATTTTGTGATATTTTTCGACAG                                                                           <  2:239914/251‑1
                                                                                                                                                 ATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTTTAATAGGCGTGGTTTCCAGTAATAAGGAAATGATTTCTTTTTTATAGTGTAATGTAATGAGTATATTTTCTGTATGGATGGGTGAAGTGGCAAAGTTAATGGTAAAAAGGGCAGTGGAATAACAATTTTGTGATATTTTTCGACAGT                                                                          >  2:95127/1‑251
                                                                                                                                                                          aaCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTTTAATAGGCGTGGTTTCCAGTAATAAGGAAATGATTTCTTTTTTATAGAGTAATGTAATGAGTATATTTTCTGTATGGATGGGTGAAGTGGCAAAGTTAATGGTAAAAAGGGCAGTGGAATAACAATTTTGTGATATTTTTCGACAGTTTGCGGTAAATTCCTGAGTAACACA                                                 <  2:162088/249‑1
                                                                                                                                                                                               TGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTTTAATAGGCGTGGTTTCCAGTAATAAGGAAATGATTTCTTTTTTATAGTGTAATGTAATGAGTATATTTTCTGTATGGATGGGTGAAGTGGCAAAGTTAATGGTAAAAAGGGCAGTGGAATAACAATTTTGTGATATTTTTCGACAGTTTGCGGTAAATTCCTGAGTAACACAGTATGACAGCATCGAACTTA                             >  2:294/1‑250
                                                                                                                                                                                                     GACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTTTAATAGGCGTGGTTTCCAGTAATAAGGAAATGATTTCTTTTTTATAGTGTAATGTAATGAGTATATTTTCTGTATGGATGGGTGAAGTGGCAAAGTTAATGGTAAAAAGGGCAGTGGAATAACAATTTTGTGATATTTTTCGACAGTTTGCGGTAAATTCCTGAGTAACACAGTATGACAGCATCGAACTTAAGTCAG                       <  1:27453/250‑1
                                                                                                                                                                                                         GAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTTTAATAGGCGTGGTTTCCAGTAATAAGGAAATGATTTCTTTTTTATAGTGTAATGTAATGAGTATATTTTCTGTATGGATGGGTGAAGTGGCAAAGTTAATGGTAAAAAGGGCAGTGGAATAACAATTTTGTGATATTTTTCGACAGTTTGCGGTAAATTCCTGAGTAACACAGTATGACAGCATCGAACTTAAGTCAGAGGTA                  <  2:83987/251‑1
                                                                                                                                                                                                                CCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCTTTAATAGGCGTGGTTTCCAGTAATAAGGAAATGATTTCTTTTTTATAGTGTAATGTAATGAGTATATTTTCTGTATGGATGGGTGAAGTGGCAAAGTTAATGGTAAAAAGGGCAGTGGAATAACAATTTTGTGATATTTTTCGACAGTTTGCGGTAAATTCCTGAGTAACACAGTATGACAGCATCGAACTTAAGTCAGAGGTATAAAGTA           <  1:133819/251‑1
                                                                                                                                                                                                                    GAAGAATTTCCCCGCTTATTCGCACCTTCCTTCGCTTTAATAGGCGTGGTCTCCAGTAATAAGGAAATGATTTCTTTTTTATAGTGTAATGTAATGAGTATATTTTCTGTATGGATGGGTGAAGTGGCAAAGTTAATGGTAAAAAGGGCAGTGGAATAACAATTTTGTGATATTTTTCGACAGTTTGCGGTAAATTCCTGAGTAACACAGTATGACAGCATCGAACTTAAGTCAGAGGTATCAAGTAGGGT       >  2:234832/1‑251
                                                                                                                                                                                                                         ATTTCCCCGCTTATTCGCACCTTCCTTAGCTTTAATAGGCGTGGTTTCCAGTAATAAGGAAATGATTTCTTTTTTATAGTGTAATGTAATGAGTATATTTTCTGTATGGATGGGTGAAGTGGCAAAGTTAATGGTAAAAAGGGCAGTGGAATAACAATTTTGTGATATTTTGCGACAGTTTGCGGTAAATTCCTGAGTAGCACAGTATGACAGCATCGAACTTAAGTCTGAGGTATCAAGTAGTGCGATGA  <  2:101482/251‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
TTGCTGAAAAACGATAACCAACTGGCGATGTTATTCACGCTGGCCAACCTGTTTCGGGCGGACCAAATGATACGTCAGTGGGAGAGATCTCACTAAAAACTGGGGATAACGCCTTAAATGGCGAAGAAACGGTCTAAATAGGCTGATTCAAGGCATTTACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1396997‑1397238
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTAGCTTTAATAGGCGTGGTTTCCAGTAATAAGGAAATGATTTCTTTTTTATAGTGTAATGTAATGAGTATATTTTCTGTATGGATGGGTGAAGTGGCAAAGTTAATGGTAAAAAGGGCAGTGGAATAACAATTTTGTGATATTTTTCGACAGTTTGCGGTAAATTCCTGAGTAACACAGTATGACAGCATCGAACTTAAGTCAGAGGTATCAAGTAGGGTGATGA  <  NC_000913/1803434‑1803209

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.