Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,124,266	Δ103 bp	coding (89‑191/1026 nt)	cytR ←	DNA‑binding transcriptional repressor CytR

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4124266	4124368	103	28 [0]	[1] 29	cytR	DNA‑binding transcriptional repressor CytR

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4124265	0 (0.000)	28 (1.030)	27/460	0.2	100%	coding (192/1026 nt)	cytR	DNA‑binding transcriptional repressor CytR
	?	NC_000913	4124369 =	0 (0.000)					coding (88/1026 nt)	cytR	DNA‑binding transcriptional repressor CytR

CTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTACGCTTGACGTTGCGCCCCATAGGCTGCGGTAAATAACCCACTTCCCGGGCCGCTTTTTCAACCCGATTACGGGTGGCCTGGGAGACTTTATCGGGATTCATTAATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCG  >  NC_000913/4124127‑4124609                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                 tacgcttttcctcaatgctggcatcaaacggcagccttgaacccagcaacaacaggccatcaatttgcttggtgatgatcaaatcgataaaggttttttcctgctgattttgatgctcaaagtcgccaatcagcaccagatatccgtgatttgccgccgtaacttcgataccgcgaataatttcgctaaagaagggatcgcagatatccgggacaatcaccagaatggtgcgggattcattaATGCTCgg                                                                                                                                                                                                                                           <  2:187711‑M2/8‑1 (MQ=255)   cgctgttcctcaatgctggcatcaaacggcagccttgaacccagcaacaacatgccatcaatttgcttggtgatgttcaaatcgataaaggttttttcctgctgattttgatgcgcacagtcgccaatcagcaccagatatccgtgatttgccgccgtaacttcgataccgcgaataatttcgctaaagaagggatcgcagatatccgggacaatcaccagaatggtgcgggattcattaATGCTCGGgag                                                                                                                                                                                                                                        <  1:80967‑M2/11‑1 (MQ=255)       gttcctcaatgctggcatcaaacggcagccttgaacccagcaacaacatgccatcaatttgcttggtgatgatcaaatcgataaaggttttttcctgctgattttgatgcgcacagtcgccaatcagcaccagatatccgtgatttgccgccgtaacttcgataccgcgaataatttcgctaaagaagggatcgcagatatccgggacaatcaccagaatggtgcgggattcattaATGCTCGGGAGACgg                                                                                                                                                                                                                                    <  2:9837‑M2/15‑1 (MQ=255)       gttcctcaatgctggcatcaaacggcagccttgaacccagcaacaacatgccatcaatttgcttggtgatgatcaaatcgataaaggttttttcctgctgattttgatgcgcacagtcgccaatcagcaccagatatccgtgatttgccgccgtaacttcgataccgcgaataatttcgctaaagaagggatcgcagatatccgggacaagctccagaatggtgcgggattcattaATGCTCGGGAGACg                                                                                                                                                                                                                                     <  1:13434‑M2/14‑1 (MQ=255)       gttcctcaatgctggcatcaaacggcagccttgaacccagcaacaacatgccatcaatttgcttggtgatgatcaaatcgataaaggttttttcctgctgattttgatgcgcacagtcgccaatcagcaccagatatccgtgagttgccgccgtaacttcgataccgcgaataatttcgctaaagaagggatcgcagatatccgggacaatcaccagaatggtgcgggattcattaATGCTCGGGAGAc                                                                                                                                                                                                                                      <  1:207838‑M2/13‑1 (MQ=255)                           accggcatccttgaacccagccacaacatgtcatcaatgtgctgggtgatgttcaaatcgataaaggttttttcctgtgtatttttatgcgcacagtcgccaatcagcaccagatatccgggatttgccgccgtaacttcgataccgcgaataatttcgctaaagaagtgatcgcagatatccgggacaatcaccagaatggcgcgggattcattaATTCTCGGGAGACGGTCGCTGCAGCGACTTTTGcc                                                                                                                                                                                                                <  2:181246‑M2/35‑1 (MQ=255)                                      tgaacccagcaacaacatgccatcaatttgcttggtgatgatcaaatcgataaaggttttttcctgctgattttgatgcgcacagtcgccaatcagcaccagatatccgtgatttgccgccgtaacttcgataccgcgaataatttcgctaaagaagggatcgcagatatccgggacaatcaccagaatggtgcgggattcattaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCaa                                                                                                                                                                                                      <  1:57394‑M2/45‑1 (MQ=255)                                                              aatttgcttggtgatgatcaaatcgataaaggttttttcctcatgattttgatgcgcaccgtcgccaatcagcaccagatatccgtgatttgccgccgtaacttcgataccgcgaataatttcgctaaagaagggatcgcagatatccgggacaatcaccagaatggtgcgggattcattaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTc                                                                                                                                                                             >  1:43378‑M2/182‑251 (MQ=255)                                                                 ttgcttggtgatgatcaaatcgataaaggttttttcctgctgattttgatgcgcacagtcgccaatcagcaccagatatccgtgatttgccgccgtaacttcgataccgcgaataatttcgctaaagaagggatcgcagatatccgggacaatcaccagaatggtgcgggattcattaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTc                                                                                                                                                                                        <  2:63092‑M2/59‑1 (MQ=255)                                                                 ttgcttggtgatgatcaaatcgataaaggttttttcctgctgattttgatgcgcacagtcgccaatcagcaccagatatccgtgatttgccgccgtaacttcgataccgcgaataatttcgctaaagaagggatcgcagatatccgggacaatcaccagaatggtgcgggattcattaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTc                                                                                                                                                                                        >  1:63092‑M2/179‑237 (MQ=255)                                                                                     cgataaaggttttttccggctgattttgatgcgcacagtcgccaatcagccccagatatctgtgatttgccgccgtaacttcgataccgcgaataatttcgctaaagaagggatcgcagatatccgggacaatcaccagaatggtgcgggattcattaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCAcactca                                                                                                                                                      <  2:201389‑M2/93‑1 (MQ=255)                                                                                                      tgctgcttttgatgcgcacagtcgccaatcagcaccagatatccgtgatttgccgccgtaacttcgataccgcgaataatttcgctaaagaagggatcgcagatatccgggacaatcaccagaatggtgcgggattcattaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCAcgg                                                                                                                                     >  2:48812‑M2/142‑250 (MQ=255)                                                                                                                            cgccaatcagcaccagatatccgtgatttgccgccgtaacgtcgataccgcgaataatttcgctaaagaagggatcgcagatatccgggacaatcaccagaatggtgcgggattcattaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGttt                                                                                                               <  1:104095‑M2/132‑1 (MQ=255)                                                                                                                                                ccgtgatttgccgccgtaacttcgataccgcgaataatttcgctaaagaagggatcgcagatatccgggacaatcaccagaatggtgcgggattcattaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCTCTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTTTACTTCACATCGGCAACAtt                                                                                            <  1:96072‑M2/151‑1 (MQ=255)                                                                                                                                                ccgtgatttgccgccgtaacttcgataccgcgaataatttcgctaaagaagggatcgcagatatccgggacaatcaccagaatggtgcgggattcattaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTTTACTTCACATCGGCAACAtt                                                                                            <  1:97926‑M2/151‑1 (MQ=255)                                                                                                                                                        tgccgccgtaacttcgataccgcgaataatttagctaaagaagggatcgcagatgtccgggacaatcaccagaatggtgcgggattcattaCTGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGAGTACTACATCCATGTTTACTTCACATCGGCAACATTTTTAGc                                                                                      >  1:184828‑M2/92‑248 (MQ=255)                                                                                                                                                                 aacttcgataccgcgaataatttcgctaaagaagggatcgcagatatccgggacaatcaccagaatggtgcgggattcattaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTg                                                                          <  1:287730‑M2/169‑1 (MQ=255)                                                                                                                                                                                  taatttcgctaaagaagggatcgcagatatccgggacaatcaccagaatggtgcgggattcattaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAAtt                                                         >  1:55356‑M2/66‑251 (MQ=255)                                                                                                                                                                                    atttcgttaaagaagggatcgcagatatccgggacaatcaccagaatggtgcgggattcattaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAAtttt                                                       >  1:92585‑M2/64‑251 (MQ=255)                                                                                                                                                                                          ctaaagaagggatcgcagatatccgggacaatcaccagaatggtgcgggattcattaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGa                                                  >  2:250340‑M2/58‑250 (MQ=255)                                                                                                                                                                                            aaagaagggatcgcagatatccgggacaatcaccagaatggtgcgggattcattaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACGCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGaaa                                                <  1:51270‑M2/195‑1 (MQ=255)                                                                                                                                                                                              agaagggatcgcagatatccgggacaatcaccagaatggtgcgggattcattaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAgt                                             <  1:250340‑M2/198‑1 (MQ=255)                                                                                                                                                                                               gaagggatcgcagatatccgggacaatcaccagaatggtgcgggattcattaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAgtg                                            >  2:214730‑M2/53‑251 (MQ=255)                                                                                                                                                                                                aagggatcgcagatatccgggacaatcaccagaatggtgcgggattaattaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGACTTTTCATGAAAAgtgt                                           >  2:35871‑M2/52‑251 (MQ=255)                                                                                                                                                                                                     atcgcagatatccgggacaatcaccagactggtgcgggattcattaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTTTACTTCACATCGGCACCATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGtgatg                                       >  2:305075‑M2/47‑250 (MQ=255)                                                                                                                                                                                                                 cgggacaatcaccagaatggtgcgggattccttaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTCCAGAATTTTCATGAATAGTGTGATGAATATTGAAtttt                          >  1:293588‑M2/35‑251 (MQ=255)                                                                                                                                                                                                                  gggacaatcaccagaatggtgcgggattcattaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGAGTTAAAACGTTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAAttttt                         <  2:313105‑M2/218‑1 (MQ=255)                                                                                                                                                                                                                                   ggtgcgggattcattaATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTTTACTTCACATCGGCa                                                                                                 <  1:208575‑M2/146‑1 (MQ=255)                                                                                                                                                                                                                                         ggATTCATTAATGCTCGGGAGACGGTCGATGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCg  >  2:226980/1‑251 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                 CTGATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTACGCTTGACGTTGCGCCCCATAGGCTGCGGTAAATAACCCACTTCCCGGGCCGCTTTTTCAACCCGATTACGGGTGGCCTGGGAGACTTTATCGGGATTCATTAATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGCGTACTACATCCATGTTTACTTCACATCGGCAACATTTTTAGCAGATAGCGCGTGAAAACGGTTACAGAATTTTCATGAAAAGTGTGATGAATATTGAATTTTTCGATCCGCCTCGCATCGTGAGCG  >  NC_000913/4124127‑4124609

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑