| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,124,266 | Δ103 bp | coding (89‑191/1026 nt) | cytR ← | DNA‑binding transcriptional repressor CytR |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4124266 | 4124368 | 103 | 28 [0] | [1] 29 | cytR | DNA‑binding transcriptional repressor CytR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4124265 | 0 (0.000) | 28 (1.030) | 27/460 | 0.2 | 100% | coding (192/1026 nt) | cytR | DNA‑binding transcriptional repressor CytR |
| ? | NC_000913 | 4124369 = | 0 (0.000) | coding (88/1026 nt) | cytR | DNA‑binding transcriptional repressor CytR | |||||
TACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTG‑ATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTACGCTTGACGTTGCGCCCCATAGGCTGCGGTAAATAACCCACTTCCCGGGCCGCTTTTTCAACCCGATTACGGGTGGCCTGGGAGACTTTATCGGGATTCATTAATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGC > NC_000913/4124024‑4124483 | tACGCTTTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACAGGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTG‑ATTTTGATGCTCAAAGTCGCCAATCAGCACCAGATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTAatgctcgg < 2:187711‑M1/250‑9 (MQ=255) cGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGTTCAAATCGATAAAGGTTTTTTCCTGCTG‑ATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTAatgctcgggag < 1:80967‑M1/251‑12 (MQ=255) gTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTG‑ATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTAatgctcgggagacgg < 2:9837‑M1/251‑16 (MQ=255) gTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTG‑ATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAAGCTCCAGAATGGTGCGGGATTCATTAatgctcgggagacg < 1:13434‑M1/250‑15 (MQ=255) gTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTG‑ATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTGAGTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTAatgctcgggagac < 1:207838‑M1/249‑14 (MQ=255) accggCATCCTTGAACCCAGCCACAACATGTCATCAATGTGCTGGGTGATGTTCAAATCGATAAAGGTTTTTTCCTG‑TGTATTTTTATGCGCACAGTCGCCAATCAGCACCAGATATCCGGGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGTGATCGCAGATATCCGGGACAATCACCAGAATGGCGCGGGATTCATTAattctcgggagacggtcgctgcagcgacttttgcc < 2:181246‑M1/249‑36 (MQ=255) tGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTG‑ATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaa < 1:57394‑M1/250‑46 (MQ=255) aaTTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTCATG‑ATTTTGATGCGCACCGTCGCCAATCAGCACCAGATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtcgcggcagtttc > 1:43378‑M1/1‑181 (MQ=255) ttGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTG‑ATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtc < 2:63092‑M1/237‑60 (MQ=255) ttGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTG‑ATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtc > 1:63092‑M1/1‑178 (MQ=255) cGATAAAGGTTTTTTCCGGCTG‑ATTTTGATGCGCACAGTCGCCAATCAGCCCCAGATATCTGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtcgcggcagtttcctgcttcttcgctttcacactca < 2:201389‑M1/251‑94 (MQ=255) tgctg‑cTTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtcgcggcagtttcctgcttcttcgctttcacactcactcctcgcctggcacgg > 2:48812‑M1/1‑141 (MQ=255) cGCCAATCAGCACCAGATATCCGTGATTTGCCGCCGTAACGTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtcgcggcagtttcctgcttcttcgctttcacactcactcctcgcctggcacgtcaggcgtactacatccatgttt < 1:104095‑M1/251‑133 (MQ=255) ccGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtcgcggcagtttcctgcttcttcgctttcacactctctcctcgcctggcacgtcaggcgtactacatccatgtttacttcacatcggcaacatt < 1:96072‑M1/250‑152 (MQ=255) ccGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtcgcggcagtttcctgcttcttcgctttcacactcactcctcgcctggcacgtcaggcgtactacatccatgtttacttcacatcggcaacatt < 1:97926‑M1/250‑152 (MQ=255) tGCCGCCGTAACTTCGATACCGCGAATAATTTAGCTAAAGAAGGGATCGCAGATGTCCGGGACAATCACCAGAATGGTGCGGGATTCATTActgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtcgcggcagtttcctgcttcttcgctttcacactcactcctcgcctggcacgtcaggagtactacatccatgtttacttcacatcggcaacatttttagc > 1:184828‑M1/1‑91 (MQ=255) aaCTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtcgcggcagtttcctgcttcttcgctttcacactcactcctcgcctggcacgtcaggcgtactacatccatgtttacttcacatcggcaacatttttagcagatagcgcgtg < 1:287730‑M1/251‑170 (MQ=255) taatTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtcgcggcagtttcctgcttcttcgctttcacactcactcctcgcctggcacgtcaggcgtactacatccatgtttacttcacatcggcaacatttttagcagatagcgcgtgaaaacggttacagaatt > 1:55356‑M1/1‑65 (MQ=255) atTTCGTTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtcgcggcagtttcctgcttcttcgctttcacactcactcctcgcctggcacgtcaggcgtactacatccatgtttacttcacatcggcaacatttttagcagatagcgcgtgaaaacggttacagaatttt > 1:92585‑M1/1‑63 (MQ=255) cTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtcgcggcagtttcctgcttcttcgctttcacactcactcctcgcctggcacgtcaggcgtactacatccatgtttacttcacatcggcaacatttttagcagatagcgcgtgaaaacggttacagaattttcatga > 2:250340‑M1/1‑57 (MQ=255) aaaGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtcgcggcagtttcctgcttcttcgctttcacacgcactcctcgcctggcacgtcaggcgtactacatccatgtttacttcacatcggcaacatttttagcagatagcgcgtgaaaacggttacagaattttcatgaaa < 1:51270‑M1/250‑196 (MQ=255) agaagGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtcgcggcagtttcctgcttcttcgctttcacactcactcctcgcctggcacgtcaggcgtactacatccatgtttacttcacatcggcaacatttttagcagatagcgcgtgaaaacggttacagaattttcatgaaaagt < 1:250340‑M1/251‑199 (MQ=255) gaagGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtcgcggcagtttcctgcttcttcgctttcacactcactcctcgcctggcacgtcaggcgtactacatccatgtttacttcacatcggcaacatttttagcagatagcgcgtgaaaacggttacagaattttcatgaaaagtg > 2:214730‑M1/1‑52 (MQ=255) aagGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTAATTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtcgcggcagtttcctgcttcttcgctttcacactcactcctcgcctggcacgtcaggcgtactacatccatgtttacttcacatcggcaacatttttagcagatagcgcgtgaaaacggttacagacttttcatgaaaagtgt > 2:35871‑M1/1‑51 (MQ=255) aTCGCAGATATCCGGGACAATCACCAGACTGGTGCGGGATTCATTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtcgcggcagtttcctgcttcttcgctttcacactcactcctcgcctggcacgtcaggcgtactacatccatgtttacttcacatcggcaccatttttagcagatagcgcgtgaaaacggttacagaattttcatgaaaagtgtgatg > 2:305075‑M1/1‑46 (MQ=255) cGGGACAATCACCAGAATGGTGCGGGATTCCTTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtcgcggcagtttcctgcttcttcgctttcacactcactcctcgcctggcacgtcaggcgtactacatccatgtttacttcacatcggcaacatttttagcagatagcgcgtgaaaacggttccagaattttcatgaatagtgtgatgaatattgaatttt > 1:293588‑M1/1‑34 (MQ=255) gggACAATCACCAGAATGGTGCGGGATTCATTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtcgcggcagtttcctgcttcttcgctttcacactcactcctcgcctggcacgtcaggcgtactacatccatgtttacttcacatcggcaacatttttagcagatagcgagttaaaacgtttacagaattttcatgaaaagtgtgatgaatattgaattttt < 2:313105‑M1/251‑219 (MQ=255) ggTGCGGGATTCATTAatgctcgggagacggtcgctgtagagacttttgccttgagggcaacgtctttcatggtcgcggcagtttcctgcttcttcgctttcacactcactcctcgcctggcacgtcaggcgtactacatccatgtttacttcacatcggca < 1:208575‑M1/162‑147 (MQ=255) | TACGCTGTTCCTCAATGCTGGCATCAAACGGCAGCCTTGAACCCAGCAACAACATGCCATCAATTTGCTTGGTGATGATCAAATCGATAAAGGTTTTTTCCTGCTG‑ATTTTGATGCGCACAGTCGCCAATCAGCACCAGATATCCGTGATTTGCCGCCGTAACTTCGATACCGCGAATAATTTCGCTAAAGAAGGGATCGCAGATATCCGGGACAATCACCAGAATGGTGCGGGATTCATTACGCTTGACGTTGCGCCCCATAGGCTGCGGTAAATAACCCACTTCCCGGGCCGCTTTTTCAACCCGATTACGGGTGGCCTGGGAGACTTTATCGGGATTCATTAATGCTCGGGAGACGGTCGCTGTAGAGACTTTTGCCTTGAGGGCAACGTCTTTCATGGTCGCGGCAGTTTCCTGCTTCTTCGCTTTCACACTCACTCCTCGCCTGGCACGTCAGGC > NC_000913/4124024‑4124483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |