Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	1,909,925	IS5 (+) +4 bp	coding (172‑175/792 nt)	kdgR ←	DNA‑binding transcriptional repressor KdgR

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1909925 =	0 (0.000)	25 (0.500)	23/482	0.8	100%	coding (175/792 nt)	kdgR	DNA‑binding transcriptional repressor KdgR
	?	NC_000913	2101749 =	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region
*	?	NC_000913	= 1909928	0 (0.000)	24 (0.480)	23/480	0.8	100%	coding (172/792 nt)	kdgR	DNA‑binding transcriptional repressor KdgR
	?	NC_000913	= 2290113	NA (NA)					noncoding (1/1195 nt)	IS5	repeat region

TTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTT  >  NC_000913/2289872‑2290352                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                ttCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCt                                                                                                                                                                                                                                         <  1:313961/250‑1 (MQ=33)  tCCAGCGGATAAGGTCGCCGGCCATTACCATCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTTCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTg                                                                                                                                                                                                                                        <  2:412143/250‑1 (MQ=18)   ccAGCGGATAAGGTCGCCGGCCATTACCATCCTTGGGTTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAAGCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCTAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTa                                                                                                                                                                                                                                      <  1:549274/251‑1 (MQ=255)     aGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGc                                                                                                                                                                                                                                    >  1:476688/1‑251 (MQ=35)          aTAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATTACTTCCACCATTTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGTTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAACCATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGccacca                                                                                                                                                                                                                               <  1:63026/251‑1 (MQ=255)            aaGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGa                                                                                                                                                                                                                             <  1:465224/251‑1 (MQ=38)                  gcctggcATTACCAGCTTTGGGGTAGAACGGCGCGATGGCTACATCCATGTTTGGCCAGGGCAGAATCTGCTCCTTGCGGGACAAGAATATCTCTTTTCTGGTCTGACGGCGCTGGCTGCTGACTTCACTGTCGGCGAAGGTAAGTTGATGGCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACTTGATCTCATATCAGGGACTTGTTCGCACCTACCATATCGCTGTAGTCTCCAGAACAGat                                                                                                                                                                                                                       <  2:207763/245‑1 (MQ=11)                  gCCGGCCATTTCCAGCCTTGGGGTAAAACGGCTCGATTACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCGTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCTCCAGAACAGat                                                                                                                                                                                                                       <  2:191469/251‑1 (MQ=255)                                     ggggTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAaga                                                                                                                                                                                                     <  1:528922/250‑1 (MQ=255)                                                      tGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGCCAAGAAAATCTCTTTTCTGGTCTGACGGAGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCCGGGACTTGTTCGCACATTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGACACAAAAACAGATTg                                                                                                                                                                                    >  2:334970/1‑250 (MQ=17)                                                            cccctaTGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCGTATGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACGTGTTCGCACCTTCAATAACGCTGTAGCCAACAGAACTGATATTGCGGAACGACAAAGAGCAACAGAACCAGATTGATGCAtt                                                                                                                                                                             <  2:551809/246‑1 (MQ=17)                                                                   gTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCttt                                                                                                                                                                      <  1:410260/251‑1 (MQ=255)                                                                        tcccaggccgaagcTGCTCCATGCTGGACAAGAAAATCTCTTTTTTGGTCTGACGGCGCTTACTGGTGAATTCCCTGTCGGCGAAGGGAAGTTTAAGAATCAAGATGAACCCTGTTCTATGGCTCCAGATGACAAACAAGATCCCAAATCAGGGACTTGTTCGCAACTTCCATAACGCCTTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATc                                                                                                                                                                  <  2:374474/237‑1 (MQ=18)                                                                        gCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATcc                                                                                                                                                                 <  1:129663/251‑1 (MQ=255)                                                                              gCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGa                                                                                                                                                            >  1:539880/1‑250 (MQ=255)                                                                               cataagcTGCTCCATGCGGGACAAGTAAATATCTGTGATGTGCTGACGGCGCTTACTGCTGAATTCACTGGCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATTGCTCCAGATGACAAACATGATCTCATATCAGTGACTTGTTCGCACCTACCATAACGCTGTAGCCAACAGAACAGATATTGCGGAACGACAAAGAGAGACAGAACCAGATTTAGGCATTGATCGTTCCTCCTTTGaaa                                                                                                                                                          <  2:115328/245‑1 (MQ=17)                                                                                  aaTCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAaatta                                                                                                                                                       <  1:172365/251‑1 (MQ=255)                                                                                  aaTCTGCGCCATGCGGGACAAGAAAATCGCTTTTCTGGTCTGACGGAGCTTACTGCTGAATTCACTGTCGGAGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGAGGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATTCATTGAGCTTTCATCCTATGAaatta                                                                                                                                                       <  1:217971/251‑1 (MQ=255)                                                                                            aTGCGGGACAAGAAAATCTCGTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGGCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCCCCTTCCATAACGCTGTAGCCACCAGAACATATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTa                                                                                                                                             <  2:172512/251‑1 (MQ=255)                                                                                                           aTCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATCACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAACGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTACTTGCTGTTAAAAGCATTGGGTAc                                                                                                                               >  2:184699/1‑250 (MQ=255)                                                                                                                 tttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGaa                                                                                                                           <  1:276845/248‑1 (MQ=255)                                                                                                                  ttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGACCGACAAAGAGAACCAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTATTTga                                                                                                                                                  >  2:144866/1‑223 (MQ=255)                                                                                                                  ttCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGc                                                                                                                                                  <  1:144866/224‑1 (MQ=255)                                                                                                                            aCGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGTGTACAGACAATACCCATCGCTc                                                                                                             >  2:148850/1‑251 (MQ=255)                                                                                                                                cgcTTACTGCTGAATTCACTGTCGGCTAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATTAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATa                                                                                                         <  1:450585/251‑1 (MQ=255)                                                                                                                                             atttaCTGTCGGCGAGGGTAAGTTTATTACTCATTATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATTAGGGACTTGTTCGCAGCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACATAACCAGATTGATGCATTGAGCTTTCAGCCCATGAAATTAATTGCTGTTAAAAGCAGTGGGTGCAGAAAATACCCATATCGCCATACCCGGAGTCAGtt                                                                                            <  2:347538/247‑1 (MQ=37)                                                                                                                                                    gTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACTTGATCGCATATCAGGGACTTGGTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGATAAAGAGAAACAGAACCAGAATGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCAGAGCTCCATACCCGGAGTCAGTTTTTaaaa                                                                                     <  2:365247/251‑1 (MQ=255)                                                                                                                                                                aaGTTGCTGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACTTGATCTCATATCAGGGCCTTGTTCGCACCTTCCATCACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAGGAGAAACAGAACCAGATTGATGCATTGAGCTTTCAACCTATGAAATTAATTGCTGTTAAAAGCATTGGTGACAGAAAAAACCCAAAGCTCCATACCCGGCGTCAGTTTTTAAACAATGtttca                                                                            >  2:296199/1‑246 (MQ=37)                                                                                                                                                                      atgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATTCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGca                                                                   <  2:502673/251‑1 (MQ=255)                                                                                                                                                                         aCTCATGATGAACCCTGGTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGAACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGaaca                                                                 >  2:400016/1‑250 (MQ=255)                                                                                                                                                                                  gatcccTGTTTTTTGGCTCCAGATGTCAAACAGTAGTGCATATCTGGGTCTTGTTGTCACCTTGCATAACGCTGTAGCCACCAGAACAGTTATGGCGTAACGACAAAGAGAAACAGAACCAGATTGATGCAGTGAGCTTTCAACCTATGAAAGTAATTGCTGTTAAAAGTATTGGGTACAGAAAATACCCAGAGCTCCATACCCGGAGGCAGTTTTTAAAAACTGTGTAAAGAAATGCTCAAGTATtgtg                                                        <  2:218209/247‑1 (MQ=255)                                                                                                                                                                                          tacTATGGCTTCACATGACTAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGGAGCCAACAGAACAGATATTGCGGAACAACAATGAGAAACAGAACCAGAATGATGCAGTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACACATAGGTACATACCCGGAGTCAGTTTTGAAAAACTGTTTAAATAAATGCACAAGTATTGTgagtgatta                                                <  2:46760/248‑2 (MQ=255)                                                                                                                                                                                                   tCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCa                                                                                                                                                                                         >  2:391202/1‑104 (MQ=255)                                                                                                                                                                                                   tCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCa                                                                                                                                                                                         <  1:391202/104‑1 (MQ=255)                                                                                                                                                                                                                        cATAACAGGGACTTGTGCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATTCCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATg                 <  2:476688/251‑1 (MQ=255)                                                                                                                                                                                                                                   cTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGt      >  1:372290/1‑251 (MQ=255)                                                                                                                                                                                                                                       ttCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCttt  >  2:384942/1‑251 (MQ=255)                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                TTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGCTGTAGCCACCAGAACAGATATTGCGGAACGACAAAGAGAAACAGAACCAGATTGATGCATTGAGCTTTCATCCTATGAAATTAATTGCTGTTAAAAGCATTGGGTACAGAAAATACCCATAGCTCCATACCCGGAGTCAGTTTTTAAAAACTGTTTAAAGAAATGCACAAGTATTGTGATTGATTTTTTAGTTGTTTTTCTTGATGAGAAGCTGATGCAAAATTCCGTCTTT  >  NC_000913/2289872‑2290352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.