New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1979270NA (NA)72 (1.190) 65/482 0.1 98.6% noncoding (1/768 nt) IS1 repeat region
?NC_000913 = 4569764 1 (0.020)intergenic (‑1037/+398) ytiE/yjiR protein YtiE/fused putative DNA‑binding transcriptional regulator/putative aminotransferase YjiR

CAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTG  >  NC_000913/1979044‑1979295
                                                                                                                                                                                                                                  |                         
cgatgatgTTCGGGTGCGTACGGGGTTGAGAAGCGGTGGTAGTGAGCTGCAGTGGTCAGGTTTTGCGGCAGGTAGAGCAGAGATGGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGTGCCTCCTCGTCAGTAGCTGAACAGGAGGTACAGCTGGCAGAAACAGAAGGCAATGGAGCACCTCAAAAACACCGTGATACACTAAATCAGTAAGTTGGCATTATCACCGATacgcgacttatccagtattat   <  2:193913/249‑21 (MQ=255)
 attaaTTTTCTGGGGCGTACCGGGGTGCGAAGCGTTGTAAGTGACCTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGTCGTCAGGCGTTGCTTATGCAATGACGCACCAACCAGGCAGGCGCTGGACAGGAGGGACAGCTGATTGAAACAGAAACCCCGGGAGCACCTCAAAAACACATTCAAACACTAAATCCATAAGTTAGAAGCA‑CACCCGTaaacctcttgataattgtattt  >  2:543386/5‑231 (MQ=255)
                                                                                                                                                                                                                                  |                         
CAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTG  >  NC_000913/1979044‑1979295

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.