Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	4,542,469	IS1 (+) +9 bp	coding (433‑441/597 nt)	fimE →	regulator for fimA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1978503 =	NA (NA)	24 (0.660)	23/486	0.5	100%	noncoding (768/768 nt)	IS1	repeat region
	?	NC_000913	4542469 =	0 (0.000)					coding (433/597 nt)	fimE	regulator for fimA
*	?	NC_000913	3583428 =	NA (NA)	24 (0.670)	22/484	0.5	100%	noncoding (1/768 nt)	IS1	repeat region
	?	NC_000913	= 4542477	0 (0.000)					coding (441/597 nt)	fimE	regulator for fimA

GAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTT  >  NC_000913/4542231‑4542725                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                         gaagaaCGGATTTTCTTCCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCGCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGggtg                                                                                                                                                                                                                                                      >  2:378866‑M2/1‑247 (MQ=255)  gtggtgatatggatgacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTGGCGGAGCg                                                                                                                                                                                                                                                     >  1:186043‑M2/238‑251 (MQ=255)  gtggggatatggatgacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTGGCGGAGCg                                                                                                                                                                                                                                                     <  2:134140‑M2/14‑1 (MQ=255)      ggatatggaggacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTTGCTGAGCgtggt                                                                                                                                                                                                                                                 <  1:91396‑M2/18‑1 (MQ=255)             ttCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGggtgatgctgccaac                                                                                                                                                                                                                                           >  1:146848‑M2/1‑235 (MQ=255)              atgacggatggctggccgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTGGCGGAGCGTGGTGCAGATAc                                                                                                                                                                                                                                         <  2:293902‑M2/26‑1 (MQ=255)                            gTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGggtgatgctgccaacttactgatttagtgta                                                                                                                                                                                                                           >  1:372763‑M2/1‑220 (MQ=255)                              cgctgtatgaatcccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGAt                                                                                                                                                                                                                         >  1:268361‑M2/210‑251 (MQ=255)                                          cccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaagtgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCAt                                                                                                                                                                                                             <  2:186043‑M2/54‑1 (MQ=255)                                           ccgcctgaagggaaagctgcacgtaatcagcaagcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAAGTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATc                                                                                                                                                                                                            <  2:330131‑M2/55‑1 (MQ=255)                                                      gggaACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttctgaggtgctccagt                                                                                                                                                                                                 >  2:45928‑M2/2‑194 (MQ=255)                                                       ggAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagt                                                                                                                                                                                                 >  1:320097‑M2/1‑193 (MQ=255)                                                               ggACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGggtgatgctgccaacttactgatttagtgta                                                                                                                                                                                                                           >  1:205684‑M2/1‑185 (MQ=255)                                                                        aaCTTGCTAACTGGAAAGTCTCTGACCGGACTGACGCTATTTTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCTCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTAGGAATTGGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtgtcttctgtttctatcag                                                                                                                                                                               >  2:275088‑M2/1‑176 (MQ=255)                                                                           agcgatatacgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGcc                                                                                                                                                                            <  1:270948‑M2/87‑1 (MQ=255)                                                                            tGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTAGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGggtgatgctgaccaattactgatttagtggttgtaggtgtttttgaggtgctccagtggcttctgtttctatcagcagt                                                                                                                                                                           <  1:176210‑M2/251‑80 (MQ=255)                                                                             cgatatacgcagcgaattgagcggcacaacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGcc                                                                                                                                                                            >  1:135694‑M2/163‑249 (MQ=255)                                                                                   acgcagcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaccactatcaataagttggagtcattaccGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAAtg                                                                                                                                                                     <  1:59884‑M2/94‑1 (MQ=255)                                                                                        gcgaattgagcggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTc                                                                                                                                                               <  1:87795‑M2/100‑1 (MQ=255)                                                                                             cTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGggtgatgctgccaacttactggttttgtgtatgatggggttttttaggtgctccagtggcttttgtttttatccgctgttccccctgttcagctac                                                                                                                                                          <  1:194155‑M2/251‑97 (MQ=255)                                                                                              tGACCGGACTGACGCTATATTTATTTATCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGggggatgctgccaactttctgatttagtgtatgatggggttttt                                                                                                                                                                                                              <  1:294968‑M2/198‑45 (MQ=255)                                                                                                  cggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGAt                                                                                                                                                                                                                         >  1:351900‑M2/142‑183 (MQ=255)                                                                                                  cggcataacctgaatctgaggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGAt                                                                                                                                                                                                                         <  2:351900‑M2/42‑1 (MQ=255)                                                                                                        aacctgaatcggaggcagcaccgggcacggctgggacggaaggcgctgtcgttctcaaaatcggtggagctgcaggacaaagtcatcgggcattatctgaacataaaccactatcaaaaagttggagtcattaccGAATGGGGGGAGGGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATGCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATg                                                                                                                                               <  2:64027‑M2/116‑1 (MQ=255)                                                                                                                  ttatttCGCGCCGCTGGAGTCGGCTTTCTCGCTAGCAGGCCTATCGCATTATTCGCGATGACGGTTTTGAAGCGGGAATCGTAACGCAGACTCATCCGCATATGTTAAGGCATGCTGTCGGTTATGAATTGGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgcgccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacg                                                                                                                                      >  2:211487‑M2/1‑134 (MQ=255)                                                                                                                                  gAGTCGGCTTTCTCGCCAGCAGGCCTTTCGCATTATTCGCGATGCCGTTATTGAAGTGGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttcggtttctaccagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccgga                                                                                                                     >  2:147398‑M2/1‑118 (MQ=255)                                                                                                                                     gctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaaaaagttggattcattaccGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAAt                                                                                                                  <  1:255595‑M2/145‑1 (MQ=255)                                                                                                                                        gCTTTCTCGCCAGCAGGCCTATCGCATTAGTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcag                                                                                                               >  1:91762‑M2/1‑112 (MQ=255)                                                                                                                                         caacggaagtcgcggtcgtcccaaaaatcggtggagctgcatgacaaagtaatctggcattatctgaacataaaccaccaacaaaaagttggagtcattaccAATTTGGCGGAGCGTGGTGCAGATACTCTTTTAATTCAGGATTATCTCGGTCATCGAAATATTCCCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTaaa                                                                                                              <  2:74382‑M2/149‑1 (MQ=255)                                                                                                                                           acggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTaaa                                                                                                              >  1:74382‑M2/101‑249 (MQ=255)                                                                                                                                                                    attCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGggcgatgctgccaacttactgatttagtgtttgatggtgtttttgaggtgctcccgtggcttctgtttctatcaactgtacctcctggtcagctactgacggggtggggcggtacggccaaagcaccgccggacatccgcgctttctctgctctcactgccgtaaa                                                                                    <  1:339901‑M2/250‑167 (MQ=255)                                                                                                                                                                         cgATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGggggatgctgccaacttactgatttagtgtatgatggtgttttttaggtgctccagtggcttctgtttctttaagctttccctcccgttcggcttcctccggggtggtgcggaaccgcaaaagcaccgccggacaatagagctatctctgctcccacttccgtaaaacatgg                                                                              <  2:101303‑M2/251‑173 (MQ=255)                                                                                                                                                                          gagctgcttgtccaagtcatcgggcattatctgaacatcaaacactctcaataagttggcatcattaccGAATTGGAGGAACGTGGTGCAGATACTCGTTTACTTCAGGATTATCTCGGGCATCGAAATATTCGCCATAATGTGCGTTATACCGCAAGTAGTGCTGCTCGTTTTGCCGGATTATGGGAAAGCAATAATCTCATAACCGAACAATTAAAAAGAGAAGAGGTTTGATTTAACttattgctcat                                                                             >  2:28595‑M2/70‑246 (MQ=255)                                                                                                                                                                           aTGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGggtgatgctgccaacttactgatttagtgtatggtggtgttttttaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagcgaatgacggggtggtgcgtaacggcaaaagcaccgccggaaataagcgctatctctgctctcactgcctttaaaacaggc                                                                             <  1:197952‑M2/250‑174 (MQ=255)                                                                                                                                                                              tgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGaaaa                                                                                                                    >  1:127805‑M2/66‑208 (MQ=255)                                                                                                                                                                               cGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGggggatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggggcggaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactg                                                                        <  1:272228‑M2/251‑179 (MQ=255)                                                                                                                                                                                   gacaaatgcatcgtgcattatctgaacgtaaaacattataaataagttgaagtcattaccGAATTGGCGGGGCGGGGTGAAGATACTAGTTTAATTCAGGATTATCTCGGGAATCGAAATATTCGCAATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAATAAATAATCTCATAAACGAAAAATTAAAAATAGAAGATGTTTGATTTAACTTATTGATAATAAAGTTaa                                                                     <  1:288949‑M2/190‑1 (MQ=255)                                                                                                                                                                                                  gTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcttaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgctt                                                     >  1:363823‑M2/1‑54 (MQ=255)                                                                                                                                                                                                                       atGTTAAGGCATGCTTGCGGTTATGAATTGGCGggtgatgctgccaacttactgattttgtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggggcgtaacggccaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatgacaactgcagttcacttacaccgcttctcaacccggtacgcacc                                   <  1:376226‑M2/248‑216 (MQ=255)                                                                                                                                                                                                                        tGTTAAGGCATGCTTGCGGTTATGAATTGGCGggtgatgctgccaacttactgatttagggtatgatggtgtttttgaggtgctcccgtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggggcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccaga                                <  1:294690‑M2/250‑219 (MQ=255)                                                                                                                                                                                                                               gCATGCTTGCGGTTATGAATTGGCGggtgatgctgcccacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggccactgcagttcacttacaccgattctcaacccggtacgcacccgaaaatcatt                        <  1:379173‑M2/251‑227 (MQ=255)                                                                                                                                                                                                                                    cTTGCGGTTATGAATTGGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggggctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacgggggggtgcgtaacggcaaaagcaccgccggaaatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatat                   <  1:49408‑M2/251‑232 (MQ=255)                                                                                                                                                                                                                                              tGAATTGGCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactggcggggtggtgcgtaaacgcaaaagcaccgccggacatcaacgatctctctgctctcactgccgtcaaacatggcaactgcagttcacttacaccgcctctcaacccggtaagcaacagaaaatcattgatttggccatgaat         <  1:192471‑M2/251‑242 (MQ=255)                                                                                                                                                                                                                                                     gCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccggacatcagcgctatctctgctctcactgccgtaaaacatggcaactgcagttcacttacaccgcttctcaacccggtacgcaccagaaaatcattgatatggccatgaatggcgttg  >  1:306420‑M2/1‑3 (MQ=255)                                                                                                                                                                                                                                                     gCGGAGCGTGGGGCAAATCCTCTTTTAATTCAGGATAATCTCGGGCATCAAAATATCCGCCATACTGGGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttttt  <  2:149786/251‑1 (MQ=255)                                                                                                                                                                                                                                                       |                                                                                                                                                                                                                                                         GAAGAACGGATTTTCTACCGTTCACCCGTTACGTTTTGATGAGCGTGAAGCCGTGGAACGCTGGACCCAGGAACGTGCTAACTGGAAAGGCGCTGACCGGACTGACGCTATATTTATTTCTCGCCGCGGGAGTCGGCTTTCTCGCCAGCAGGCCTATCGCATTATTCGCGATGCCGGTATTGAAGCTGGAACCGTAACGCAGACTCATCCTCATATGTTAAGGCATGCTTGCGGTTATGAATTGGCGGAGCGTGGTGCAGATACTCGTTTAATTCAGGATTATCTCGGGCATCGAAATATTCGCCATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTT  >  NC_000913/4542231‑4542725

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.