Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 4,124,498 IS2 (+) +5 bp intergenic (‑42/+110) cytR ← / ← priA DNA‑binding transcriptional repressor CytR/primosomal protein N'

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4124498 =2 (0.070)29 (0.990) 29/488 0.1 93.4% intergenic (‑42/+114) cytR/priA DNA‑binding transcriptional repressor CytR/primosomal protein N'
?NC_000913 = 4499511 NA (NA)noncoding (1331/1331 nt) IS2 repeat region
* ? NC_000913 = 41245021 (0.040)25 (0.860) 24/486 0.2 96.1% intergenic (‑46/+110) cytR/priA DNA‑binding transcriptional repressor CytR/primosomal protein N'
?NC_000913 4498181 = NA (NA)noncoding (1/1331 nt) IS2 repeat region

GTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCG  >  NC_000913/4499303‑4499699
                                                                                                                                                                                                                |                                                                                                                                                                                            
gTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACtt                                                                                                                                                    >  1:206072/1‑251 (MQ=255)
           aaaGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAg                                                                                                                                         <  1:195751/251‑1 (MQ=255)
                                                             aaaaGAACCTTGCAGAGGGGTTCGAGCATTAAAACGAATGGCAGCCGCAGAGTGCGTGGGGTTATCGAGCGGCAGGGGAATATCTGCGGAAGGAGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAAGGGCAAATCCACCGTGTGCTGATATGAAAACAGATATTTTATACAGAATACTATGCAGTACAAGCGACTGTAATACCGTCTGCCCTATAAGATTACCTGTGATCAGGAAGAATa                                                                                       <  2:94203/250‑1 (MQ=18)
                                                                                     aGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATATGGGCAAATCCTGCTTGTGCAGATATGAATACGGATATTTAATACAGAATa                                                                                                                                                       <  2:44730/163‑1 (MQ=14)
                                                                                     aGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATa                                                                                                                                                       >  1:44730/1‑163 (MQ=255)
                                                                                                                                                  gCGGCAGCGGGTTTGTAATGGGTTAAGTGATAACAGATGGTTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGAAATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCGCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCg  <  2:206072/251‑1 (MQ=255)
                                                                                                                                                                                                                |                                                                                                                                                                                            
GTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCG  >  NC_000913/4499303‑4499699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.