New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1411924	0 (0.000)	12 (0.460)	12/436	0.8	88.9%	coding (25/936 nt)	ttcA	tRNA cytosine(32) 2‑sulfurtransferase TtcA
	?	NC_000913	1434985 =	3 (0.120)					intergenic (‑579/+200)	ynaM/uspF	protein YnaM/universal stress protein F

GAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCT  >  NC_000913/1434752‑1435230                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                      tccgggaagcccggttgcttttgatcgaggttaacagccaccagcgaaaaattgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGAtttt                                                                                                                                                                                                                                       <  1:187169‑M2/17‑1 (MQ=255)     ggaagcccggttgcttttgatcgaggttaacagccaccagcgaaaaattgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGAc                                                                                                                                                                                                                                  >  1:286030‑M2/230‑251 (MQ=255)                                            gcaaaaaattgatttgcgcgctttgatgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCagaaga                                                                                                                                                                                           <  2:286030‑M2/61‑1 (MQ=255)                                                     tgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttaccccaggagaggcaaaccatgatgcgatcgccttcttcaatcatattgtagtcagcaattgcttcgcccacgttacgacgcaaccgtttttgtaattttttcaggttgtcttgttctttcttACTACTTTCTTGATTTTGCGACATTTAAAATCGACTCAATTCGTTatatggcatcagaagtttatccttc                                                                                                                                                                                  >  2:7347‑M2/182‑241 (MQ=255)                                                                 ccgatcgcaaattgcgaagaatctccagcatggtatagctgtctttccccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttAATAATTGCTTGATTTTGTGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATTCGTCAGGCCGGAACg                                                                                                                                                                       <  2:227916‑M2/81‑1 (MQ=255)                                                                        caaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGACGAGTATGCGTCATGCcggaccg                                                                                                                                                                       >  1:227916‑M2/163‑240 (MQ=255)                                                                                  agaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTg                                                                                                                                                     <  2:287974‑M2/99‑1 (MQ=255)                                                                                                ggtatagctgtctttaccctcggagaggcaaaccattatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTTATTTTGCGACATTTAAAAGCGACTCGATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTTATATAAAAAACtg                                                                                                                                        <  1:358653‑M2/112‑1 (MQ=255)                                                                                                                                  atgatgcgttcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTc                                                                                                     <  1:211611‑M2/147‑1 (MQ=255)                                                                                                                                                       atcatatttaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcatgttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCATCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATc                                                                                <  1:267254‑M2/168‑1 (MQ=255)                                                                                                                                                                    aGTAAAATACTTATGAGTCAGAGAGTTGTGAGTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCgcag                                                                   <  2:176715/251‑1 (MQ=255)                                                                                                                                                                               tATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGTATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAAt                                                                                 <  2:249247/226‑1 (MQ=255)                                                                                                                                                                               tATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAAt                                                                                 >  1:249247/1‑226 (MQ=255)                                                                                                                                                                                    cacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGGACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGACCGCAGCAATGTGCGGGCGtt                                                    >  1:36045‑M2/55‑250 (MQ=255)                                                                                                                                                                                                             aatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGGACGGGTTAGAGGGGAAAATGTCAGCACATTTGCGAAATTAATCAAAAAACCCGCAGCAATGTGCGGGCGGTAGTGTCAGCGCACCACCAGCacgggg                          >  1:244834‑M2/30‑249 (MQ=255)                                                                                                                                                                                                                ttGTTCAGGTTGTATTGTTCTTTCTTACTAATTGCTTGATGTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCGGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAAGGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCa                        <  1:173061/250‑1 (MQ=255)                                                                                                                                                                                                                                      tcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCt  <  2:312811/250‑1 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                      GAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTACAGCT  >  NC_000913/1434752‑1435230

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.