New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1411924	0 (0.000)	12 (0.460)	12/436	0.8	88.9%	coding (25/936 nt)	ttcA	tRNA cytosine(32) 2‑sulfurtransferase TtcA
	?	NC_000913	1434985 =	3 (0.120)					intergenic (‑579/+200)	ynaM/uspF	protein YnaM/universal stress protein F

ACTCGGGCAGAACGTGTTCCGGGAAGCCCGGTTGCTTTTGATCGAGGTTAACAGCCACCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCCGTCAACAGCCA  >  NC_000913/1411675‑1412146                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                               tatcaggCAGAACGTGTGCCGGGAATCCCGGTTGCTTTTGATCGAGGTTAACAGCAACCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAATCCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTCCGACTCAGACTTTTTTGTAATTTGTTCAGGTGGTATTGTtctttctt                                                                                                                                                                                                                                <  1:41913/245‑1 (MQ=255)                  tCCGGGAAGCCCGGTTGCTTTTGATCGAGGTTAACAGCCACCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgatttt                                                                                                                                                                                                               <  1:187169‑M1/250‑18 (MQ=255)                      ggAAGCCCGGTTGCTTTTGATCGAGGTTAACAGCCACCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgac                                                                                                                                                                                                          >  1:286030‑M1/1‑229 (MQ=255)                                                             gcaaaaaattgATTTGCGCGCTTTGATGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaaga                                                                                                                                                                   <  2:286030‑M1/248‑62 (MQ=255)                                                                      tgattgGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCAGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGTAGTCAGCAATTGCTTCGCCCACGTTACGACGCAACCGTTTTTGTAATTTTTTCAGGTTGTCTTGTTCTTTCTTactactttcttgattttgcgacatttaaaatcgactcaattcgttatatggcatcagaagtttatccttc                                                                                                                                                          >  2:7347‑M1/1‑181 (MQ=255)                                                                                  ccgatcgcaaattgCGAAGAATCTCCAGCATGGTATAGCTGTCTTTCCCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTaataattgcttgattttgtgacatttaaaagcgactcaattcgttatatggcatcagaagagtattcgtcaggccggaacg                                                                                                                                               <  2:227916‑M1/244‑82 (MQ=255)                                                                                         cAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagacgagtatgcgtcatgccggaccg                                                                                                                                               >  1:227916‑M1/1‑162 (MQ=255)                                                                                                   aGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctg                                                                                                                             <  2:287974‑M1/251‑100 (MQ=255)                                                                                                                 ggTATAGCTGTCTTTACCCTCGGAGAGGCAAACCATTATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttctttattttgcgacatttaaaagcgactcgattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatcttatataaaaaactg                                                                                                                <  1:358653‑M1/250‑113 (MQ=255)                                                                                                                                                   atgatgCGTTCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatggtacggattagaggggaaaatgtc                                                                             <  1:211611‑M1/251‑148 (MQ=255)                                                                                                                                                                        aTCATATTTAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCATGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccatcataagaaatctgatataaaaaactgtggcgtgtatggtacggattagaggggaaaatgtcagcacatttgcgaaatgaatc                                                        <  1:267254‑M1/251‑169 (MQ=255)                                                                                                                                                                                                     cACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccgggacgcccagcataagaaatctgatataaaaaactgtggcgtgtatggtacggattagaggggaaaatgtcagcacatttgcgaaatgaatcaaaaagaccgcagcaatgtgcgggcgtt                            >  1:36045‑M1/1‑54 (MQ=255)                                                                                                                                                                                                                              aaTTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatgggacgggttagaggggaaaatgtcagcacatttgcgaaattaatcaaaaaacccgcagcaatgtgcgggcggtagtgtcagcgcaccaccagcacgggg  >  1:244834‑M1/1‑29 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                               ACTCGGGCAGAACGTGTTCCGGGAAGCCCGGTTGCTTTTGATCGAGGTTAACAGCCACCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCCGTCAACAGCCA  >  NC_000913/1411675‑1412146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.