New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2288919 =	NA (NA)	24 (0.830)	23/486	0.3	96.0%	noncoding (1195/1195 nt)	IS5	repeat region
	?	NC_000913	3131469 =	1 (0.030)					coding (940/1068 nt)	yghQ	putative transport protein YghQ

TCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGT‑TCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCT‑GGATATCTTTTTCC‑AGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAACCCC  >  NC_000913/2288689‑2289164                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                      tCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGT‑TCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCT‑GGATATCTTTTTTC‑AGGACAACACCATCAACTGTCTCACCCTACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAAGAAGGTGCGGATAAGCgggg                                                                                                                                                                                                                                   >  1:94647/1‑251 (MQ=255)               gTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGT‑TCTCCGCCAGGATTGATTTTCGTATTAGTGGCGGTCCCATAAACCAGCT‑GGATATCTTTTTCC‑AGGACAACACCATCAACTGTCTCACCATGCTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGc                                                                                                                                                                                                                     <  1:49356/251‑1 (MQ=255)                 aTTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGT‑TCTACGCAAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCACCT‑GGATTTATTTTTCC‑AGGACAACACCCTTCACTTTCTCACCATACTCCACAGTTGATGCCACTGCTATGGGGGGAAATAAGGGAGGTGAGACTAAGCGGGGAAATTCTTCTCGGc                                                                                                                                                                                                                     >  1:328736/1‑249 (MQ=255)                        ggcgCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGT‑TCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCT‑GGATATCTTTTTTC‑AGGACAAAACCATCACCTGTCTCACCATAATTAACCGTTGTTGCCAATGCTATGGGTGAATATAAAGGAGGGGCGGATAAACGGGGGAAATCTTCTCGGCTGACTccgt                                                                                                                                                                                                            >  1:296299/1‑248 (MQ=255)                                                                            cttacACCAAATTCTTTTATATGCTGT‑TCTCAGCCAGGATTGATTTTCGTATTATTGGCGGTACCATAAACCAGCT‑GGTTATCTTTTTCC‑CGGACAACACCATCAACCGTCTCACCATACTCAACAGATGATTTCAATGCTATGGGAGAATTTAAGGCAGGTGTGCATAAGCGGGGAAATTCTTCTCGGCTGACTTAGTCATTTAATTTCTTCATGTTTGGGCCGCATTTTTCTCCCGTAAATGCCTTGa                                                                                                                                                         >  1:285883/1‑250 (MQ=255)                                                                              tacACCAAATTCTTTTATATGCTAT‑TCTCCGCCAGGATTGATTTTCGTATTATTAGCGGTACCATAAACCTACT‑GGATATCTTTTTAC‑AGGACAACACCATCAACTGTCTCACAATACTAAACAAGTGATGTCAATGAAATGGGTGAATATAAGGAAGGAGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTTAGTCATTTCATTTCTTCCTGTTTGAGCCGATTTTTTCTCCCGTAAATGACtttcat                                                                                                                                                       >  2:321854/1‑246 (MQ=25)                                                                                      aTTCTTTTATAAG‑TGTGTCGCCGCCAGGATTGTTTTTCTTTTTATCGTCTGTCCCATAAGCCAGCT‑GTATATCTTTGGCC‑TGTAAAACACCATCTTCTGTCGCTCCATATACTACAGTTGATGTCAATGCTATGGGTGAATATAAGGTCGTTTCGAATAGGCTTGGAAATTTTTCTCGGCTTACTCAGCCATTTCATTCCTTCTTATTTTTGCCTATTTTTTCTCCCGTAAATGCCTTGAATCAGCCtttt                                                                                                                                              <  2:306323/251‑4 (MQ=255)                                                                                           tttATATGCTGT‑TCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCT‑GGATATCTTTTTCC‑AGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTa                                                                                                                                            <  1:100279/248‑1 (MQ=255)                                                                                                             gCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAAACAGCTCGGA‑ATCTTTTTCCCAGG‑CAAAACCATCAACTGTCTCCCCCAAATCAAACGTTGATGCCCAAGCTCTGGGTGAATATAAGGAAGGTGCGGATAAACGGGGAAATTATTCTCGGCTGTATCAGTCATTTCATTTCTTCATGTTTGAGCCGGTTTTTTCTCCCGTAAATGCCTTTAATCCGCACATTTAGACCGTTTCTTTGCCAtttt                                                                                                                        >  1:225047/1‑250 (MQ=12)                                                                                                                 ggATTGATTTTCTTATTAGTGGCGTACCCATACACCAGCT‑TGATAACGTGTTCC‑CGAACAACACCATAAACTGTCTCTCAATCCTCAACAGTTGTTGCAAATGCTAAGGTTGCATATAAGGAAGGTGCGAATAAGCGTGGAAATTCTCCTCGGCTGACTCAGTCATTCCATTTCTTCACGTTTGATCCGATTTTTTCTCCCTTAAATGCCTTGAATCATACTATTTAGACCGTTTCTTCGCCATTTAAGGc                                                                                                                    <  2:114351/251‑1 (MQ=9)                                                                                                                                    tGGCGGTCCCATAAACCAGCT‑GGATAACTTTTTCC‑AGGACAACACCAACAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATACGGAAGGAGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTAAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGt                                                                                                 >  1:342185/1‑251 (MQ=255)                                                                                                                                        ggttccATAAACCAGCT‑GGATATCTTTTTCC‑AGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCAGTTTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTAACCCAAGTTTTTAGTg                                                                                                >  2:215248/5‑248 (MQ=255)                                                                                                                                                                                  ccATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCACAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAgg                                                     >  1:328976/1‑251 (MQ=255)                                                                                                                                                                                      cAACTGTCTCACCATACTCAACAGTTGATGCCCATGCTATGGGTGAATATCAGGCAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGCCTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTTAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGCTCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTgg                                                 >  2:284615/1‑251 (MQ=255)                                                                                                                                                                                                          aCAGTTGACGCCAATGCTATGGGCGAATATAAGGAAGGTGCGAATAACCGGGGAAATTCTTCTCGGCTGACTCAGTCATCTCATTTCTTAATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCATATTTCGACCGATTCTTCGCCATTTAAGGAGTTATCCCCAGATTTTAGTGAGATCTCTCCCACTGACGTATCATTTGCTCCGCCCGAAACAGTTTGCCAAGCGTGAATAACATCGcc                             >  2:375512/1‑251 (MQ=14)                                                                                                                                                                                                               tGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTg                        >  1:56423/1‑251 (MQ=40)                                                                                                                                                                                                                                   aaTATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGTCCGTTTCTTCGCCATTTAAGGAGTTATCCCCCGTTTTTAGTGAGATCTCTCCCATTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCTGCGTGAATAACATCGCCAGCTGGTTATCGTTTTTCAGCAAcc    >  2:114392/1‑251 (MQ=255)                                                                                                                                                                                                                                     tataAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAAcccc  >  2:93266/1‑251 (MQ=11)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                                      TCATTTAATACTGAGTATTCTGCGGCGCCATTCATTTCAATGTACTGATACCCTCCGTTAATTTCAGTATTATTACTTACACCAAATTCTTTTATATGCTGT‑TCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCT‑GGATATCTTTTTCC‑AGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTTTTAGTGAGATCTCTCCCACTGACGTATCATTTGGTCCGCCCGAAACAGGTTGGCCAGCGTGAATAACATCGCCAGTTGGTTATCGTTTTTCAGCAACCCC  >  NC_000913/2288689‑2289164

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.