New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4498181	2 (0.040)	29 (0.650)	28/466	0.5	95.2%	noncoding (1/1331 nt)	IS2	repeat region
	?	NC_000913	4499518 =	1 (0.020)					intergenic (+18/‑1742)	insD6/yjgZ	IS2 insertion element protein InsB/uncharacterized protein YjgZ

AGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTATATTTTCAGTACAAATACCGGTCATCCACTGAAAAATACCTGCGAAATGACG  >  NC_000913/4499270‑4499766                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                         acagtaatcaacccgggcaaatacccgagaattattctaggattattttattggttaaacaagacaaccggtattaactgatgtatttactatttaccgctccatgcaggggggattatcagaatccgcggttcttcattatttatatacattcattaaaaaagtaacctcataaaacatcctgtactcacagggtactgcgggataacttacgtaaggagtgctgcggggatttgatggtcccttgtGCt                                                                                                                                                                                                                                                        >  2:283578‑M2/249‑251 (MQ=255)      aatcataccgggcaaatgccctggaattattctaggattattttctttgttaaaaaagacaaacggtattaactgatggatttactatttaccgctccctgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcggtataactgacgtaaggagtgccgcagggatttgatggtcccttgtGCTGata                                                                                                                                                                                                                                                    <  2:290709‑M2/7‑1 (MQ=255)                               attattctaggattattttctttgttaaaaaagacaaacggtattaactgatgtatttactatttaccgctccctgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATa                                                                                                                                                                                                                          <  2:48330‑M2/33‑1 (MQ=255)                                ttattctaggattattttctttgttaaaaaagacaaacggtattaactgatgtatttactatttaccgctccctgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATAc                                                                                                                                                                                                                         >  1:403008‑M2/218‑251 (MQ=255)                                 tatgctaggagtattttagttgttaaaaaagaaaaacggtattaactgatgtatttactatttaccgctccctgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATAc                                                                                                                                                                                                                         <  2:32773‑M2/34‑1 (MQ=255)                                  attctaggattattttctttgttaaaaaagacaaacggtattaactgatgtatttactatttaccgctccctgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGat                                                                                                                                                                                                                                         <  2:350509‑M2/18‑1 (MQ=255)                                  attctaggattattttctttgttaaaaaagacaaacggtattaactgatgtatttactatttaccgctccctgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGat                                                                                                                                                                                                                                         >  1:350509‑M2/216‑233 (MQ=255)                                       aggattattttctttgttaaaaaagacaaacggtattaactgatgtatttactatttaccgctccctgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACtttt                                                                                                                                                                                                                     <  1:50232‑M2/38‑1 (MQ=255)                                                          aaaaagacaaacggtattaactgatgtatttactatttaccgctccctgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGatat                                                                                                                                                                                                                                       >  1:279880‑M2/192‑211 (MQ=255)                                                          aaaaagacaaacggtattaactgatgtatttactatttaccgctccctgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGatat                                                                                                                                                                                                                                       <  2:279880‑M2/20‑1 (MQ=255)                                                            aaagacaaacggtattaactgatgtatttactatttaccgctccctgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGt                                                                                                                                                                                             <  1:289868‑M2/62‑1 (MQ=255)                                                                      ggtattaactgatgtatttactatttaccgcttcctgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtacgcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCatata                                                                                                                                                                                   <  2:79719‑M2/72‑1 (MQ=255)                                                                        cAAACCAGACGGGTTAACGGCAGCAAAGAACCCTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGGATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATg                                                                                                                                                                                 >  1:138392/1‑251 (MQ=255)                                                                                        tactatttaccgctccctgcaggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAgg                                                                                                                                                                 >  1:38847‑M2/162‑251 (MQ=255)                                                                                                             ggggggattatcagaatccgcggttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGttt                                                                                                                                            >  2:406109‑M2/141‑251 (MQ=255)                                                                                                              gggtgattatcagaatcagctgttattcattatttatatacattcaataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagtgatttgatggtcctttgtTCTGATATGAATACGGATATTTTATACAGAATACGTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTc                                                                                                                                           <  1:196801‑M2/112‑1 (MQ=255)                                                                                                                                                          caataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAAc                                                                                               <  1:121035‑M2/156‑1 (MQ=255)                                                                                                                                                          caataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAAc                                                                                               <  1:479‑M2/156‑1 (MQ=255)                                                                                                                                                           aataaaaaagtaacctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAAc                                                                                               >  1:338830‑M2/95‑250 (MQ=255)                                                                                                                                                                        cctcataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCtt                                                                                 >  2:319271‑M2/82‑251 (MQ=255)                                                                                                                                                                         cgcataaaaaatcctgtaatcacaggggtatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttggGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTATCAAACTGTCTGCCGGTATATTCCTCTCTCCCGTAAAAACCATAACAGGTTAGTTATCTTc                                                                                <  2:310456‑M2/171‑1 (MQ=255)                                                                                                                                                                           cataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCg                                                                               <  1:294154‑M2/172‑1 (MQ=255)                                                                                                                                                                            ataaaaaatcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTc                                                                             >  1:23993‑M2/78‑251 (MQ=255)                                                                                                                                                                                   atcctgtactcacagggtgatgcgggataactgacgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGa                                                                                                                                                 >  1:200202‑M2/71‑176 (MQ=255)                                                                                                                                                                                   atcctgtacgcacagggtgatgcgggataactgacggaaggagtgctgcagggagttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGa                                                                                                                                                 <  2:200202‑M2/106‑1 (MQ=255)                                                                                                                                                                                                                    acgtaaggagtgctgcagggatttgatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTATATTTTCAGTACAAATa                                     <  1:406109‑M2/214‑1 (MQ=255)                                                                                                                                                                                                                     cgtaaagagtgctgcagggatttaatggtccattgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATAAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAACCCATAACAGGTTAGTTATCTACGTCTGTCAGCGGCTTGAATGGGGGTATATTTTCAGTACAAATa                                     >  2:391240‑M2/37‑250 (MQ=255)                                                                                                                                                                                                                                            gatggtcccttgtTCTGATATTAATACGGATGTTTTATACAGAATTCTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTATATTTTCAGTACAAATCCCGGTCATCCACTGAAAAATACCt             <  2:391843‑M2/238‑1 (MQ=255)                                                                                                                                                                                                                                            gatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCa                                                                                                                                          <  2:414688‑M2/113‑1 (MQ=255)                                                                                                                                                                                                                                            gatggtcccttgtGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCa                                                                                                                                          >  1:414688‑M2/14‑126 (MQ=255)                                                                                                                                                                                                                                                       gtgCTGATATGGATACGGATAGTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTATATTTTCAGTACAAATACCGGTCATCCACTGAAAAATACCTTCGAAATGACg  <  2:138392/251‑1 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                         AGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCACCTTGTGCTGATATGAATACGGATATTTTATACAGAATACTTTTCAGTACAAGCGACTGTATTACAGTCTGCCATATATGATTACCTGTGATCAGGAAGAATAAGTGGCTGAGGTTTCAAACTGTCTGCCGGTATATTCCTCTCTCCCTTAAAAACCATAACAGGTTAGTTATCTTCGTCTGTCAGCGGATTGAATGGCGGTATATTTTCAGTACAAATACCGGTCATCCACTGAAAAATACCTGCGAAATGACG  >  NC_000913/4499270‑4499766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.