New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4498181	2 (0.040)	29 (0.650)	28/466	0.5	95.2%	noncoding (1/1331 nt)	IS2	repeat region
	?	NC_000913	4499518 =	1 (0.020)					intergenic (+18/‑1742)	insD6/yjgZ	IS2 insertion element protein InsB/uncharacterized protein YjgZ

ACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGC  >  NC_000913/4497934‑4498419                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                               aCAGTAATCAACCCGGGCAAATACCCGAGAATTATTCTAGGATTATTTTATTGGTTAAACAAGACAACCGGTATTAACTGATGTATTTACTATTTACCGCTCCATGCAGGGGGGATTATCAGAATCCGCGGTTCTTCATTATTTATATACATTCATTAAAAAAGTAACCTCATAAAACATCCTGTACTCACAGGGTACTGCGGGATAACTTACGTAAGGAGTGCTGCGGGGATTTGATGGTCCCTTGTgct                                                                                                                                                                                                                                             >  2:283578‑M1/1‑248 (MQ=255)      aaTCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGc                                                                                                                                                                                                                                        >  2:388837/1‑251 (MQ=255)      aaTCATACCGGGCAAATGCCCTGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGGATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGTATAACTGACGTAAGGAGTGCCGCAGGGATTTGATGGTCCCTTGTgctgata                                                                                                                                                                                                                                         <  2:290709‑M1/250‑8 (MQ=255)                               attattCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaata                                                                                                                                                                                                               <  2:48330‑M1/251‑34 (MQ=255)                                ttattCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatac                                                                                                                                                                                                              >  1:403008‑M1/1‑217 (MQ=255)                                 tatgctaggAGTATTTTAGTTGTTAAAAAAGAAAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatac                                                                                                                                                                                                              <  2:32773‑M1/246‑35 (MQ=255)                                  attCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggat                                                                                                                                                                                                                              <  2:350509‑M1/233‑19 (MQ=255)                                  attCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggat                                                                                                                                                                                                                              >  1:350509‑M1/1‑215 (MQ=255)                                       aGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatactttt                                                                                                                                                                                                          <  1:50232‑M1/248‑39 (MQ=255)                                            tattTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATaa                                                                                                                                                                                                   <  1:388837/250‑1 (MQ=255)                                                          aaaaaGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatat                                                                                                                                                                                                                            >  1:279880‑M1/1‑191 (MQ=255)                                                          aaaaaGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatat                                                                                                                                                                                                                            <  2:279880‑M1/211‑21 (MQ=255)                                                            aaaGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagt                                                                                                                                                                                  <  1:289868‑M1/251‑63 (MQ=255)                                                                      ggTATTAACTGATGTATTTACTATTTACCGCTTCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACGCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatata                                                                                                                                                                        <  2:79719‑M1/251‑73 (MQ=255)                                                                                        tactatttacCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcagg                                                                                                                                                      >  1:38847‑M1/1‑161 (MQ=255)                                                                                                             ggggggATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggttt                                                                                                                                 >  2:406109‑M1/1‑140 (MQ=255)                                                                                                              gggtgattaTCAGAATCAGCTGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGTGATTTGATGGTCCTTTGTtctgatatgaatacggatattttatacagaatacgtttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttc                                                                                                                                <  1:196801‑M1/247‑113 (MQ=255)                                                                                                                                                          cAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataac                                                                                    <  1:121035‑M1/251‑157 (MQ=255)                                                                                                                                                          cAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataac                                                                                    <  1:479‑M1/251‑157 (MQ=255)                                                                                                                                                           aaTAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataac                                                                                    >  1:338830‑M1/1‑94 (MQ=255)                                                                                                                                                                        ccTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataacaggttagttatctt                                                                      >  2:319271‑M1/1‑81 (MQ=255)                                                                                                                                                                         cgcatAAAAAATCCTGTAATCACAGGGGTATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGGgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtatcaaactgtctgccggtatattcctctctcccgtaaaaaccataacaggttagttatcttc                                                                     <  2:310456‑M1/249‑172 (MQ=255)                                                                                                                                                                           cATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataacaggttagttatcttcg                                                                    <  1:294154‑M1/250‑173 (MQ=255)                                                                                                                                                                            aTAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataacaggttagttatcttcgtc                                                                  >  1:23993‑M1/1‑77 (MQ=255)                                                                                                                                                                                   aTCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctga                                                                                                                                      >  1:200202‑M1/1‑70 (MQ=255)                                                                                                                                                                                   aTCCTGTACGCACAGGGTGATGCGGGATAACTGACGGAAGGAGTGCTGCAGGGAGTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctga                                                                                                                                      <  2:200202‑M1/176‑107 (MQ=255)                                                                                                                                                                                                                    aCGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataacaggttagttatcttcgtctgtcagcggattgaatggcggtatattttcagtacaaata                          <  1:406109‑M1/251‑215 (MQ=255)                                                                                                                                                                                                                     cGTAAAGAGTGCTGCAGGGATTTAATGGTCCATTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgataaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaacccataacaggttagttatctacgtctgtcagcggcttgaatgggggtatattttcagtacaaata                          >  2:391240‑M1/1‑36 (MQ=255)                                                                                                                                                                                                                                            gATGGTCCCTTGTtctgatattaatacggatgttttatacagaattcttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttcaaactgtctgccggtatattcctctctcccttaaaaaccataacaggttagttatcttcgtctgtcagcggattgaatggcggtatattttcagtacaaatcccggtcatccactgaaaaatacct  <  2:391843‑M1/251‑239 (MQ=255)                                                                                                                                                                                                                                            gATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttca                                                                                                                               <  2:414688‑M1/126‑114 (MQ=255)                                                                                                                                                                                                                                            gATGGTCCCTTGTgctgatatgaatacggatattttatacagaatacttttcagtacaagcgactgtattacagtctgccatatatgattacctgtgatcaggaagaataagtggctgaggtttca                                                                                                                               >  1:414688‑M1/1‑13 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                               ACAGTAATCATCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCATAAAAAATCCTGTACTCACAGGGTGATGCGGGATAACTGACGTAAGGAGTGCTGCAGGGATTTGATGGTCCCTTGTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGATCGCAATTGTTCAGCAGAGCTTTGAACCGGGGATGACGGTCTCCCTCGTTGCCCGGCAACATGGTGTAGCAGCCAGCCAGTTATTTCTCTGGC  >  NC_000913/4497934‑4498419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.