New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979271 =	0 (0.000)	25 (0.690)	25/488	0.4	100%	intergenic (‑56/‑482)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	= 2102947	NA (NA)					pseudogene (443/446 nt)	wbbL	interrupted rhamnosyltransferase WbbL

CAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCTATATTTTTCCTTTACATACGCCAC  >  NC_000913/2102705‑2103182                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                            cAGCGGATAAGGTAGACGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCAACATGTTTTGCCATGGCAGAAACTGCACCATATGGGCCAAGAAAATTACTTTTATGGACTGACGGCGATTACTGCTGACTTCAATGTCGGCGAAGGTAAGTTGATGACTCATGAAGAACACTGTTCTATGGCTCCAGATGACAAACATGAATTCATATCAGGGACTTGATCGCACCTACCATGATCCCTAAc                                                                                                                                                                                                                                     >  2:84709/1‑251 (MQ=11)   gCGGATAAGGTCGCCGGCCATTACCAGTCTTGGGGTAAAACGTCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGTCGCTTACTGCTGAATTCACGGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCAGATCAGGGCCTTCGTCGCTCCTTCCTTAATCCCTAACAt                                                                                                                                                                                                                                   <  2:303754/251‑1 (MQ=11)     ggATAAGGTCGCCTGCCCTTACCAGGCTTGGGGTAAAACGGCTCGATGACTTCCACCATGGTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGTCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGTTGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATaa                                                                                                                                                                                                                                 <  1:292675/251‑1 (MQ=255)                           cAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAg                                                                                                                                                                                                           <  1:36175/251‑1 (MQ=255)                                                    gattttcaccaTGTTTTGTCATTGCAGCATCTGTTTCATGAGGGACAAGAAAAGTTTTTTTCTGGGCTTACGGCGCTTACTGCTGAATTCGCTGTCTGCGAAGGTTAGTTGATCACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTGGATCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATTAGAAAGCACAGGAAATTTTCTTACggcttaa                                                                                                                                                                                  <  2:315325/245‑6 (MQ=17)                                                          caccaTGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGt                                                                                                                                                                            >  1:334807/1‑251 (MQ=255)                                                            ccaTGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTTCTGAAATCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATTCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTaa                                                                                                                                                                          <  1:284571/251‑1 (MQ=255)                                                                 ttttTCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGACGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTACCATAACTGACACAATAAAATCAGAAAGCAACGGAAATTTTCTTCCGGAATAATCATGTAAAGAtt                                                                                                                                                                     >  2:328183/1‑251 (MQ=17)                                                                    tGCCATGGCAGAAACTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGACTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGACTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGCCACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATgaaacgctttcg                                                                                                                                                                  >  2:314881/1‑240 (MQ=18)                                                                      ccATGGAAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCt                                                                                                                                                                <  1:62619/251‑1 (MQ=255)                                                                        aTGGCCGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCATACGGAATAATCATGTAAAGATTTCGCtac                                                                                                                                                              >  2:324785/1‑249 (MQ=255)                                                                            cAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCCGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCAtct                                                                                                                                                          <  1:179292/251‑1 (MQ=255)                                                                                   tGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAAc                                                                                                                                                    >  2:128898/1‑250 (MQ=255)                                                                                               gACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCAATGTCGGCGAAGGTAAGTTGATGACTCATGATGAACACTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATTACACAATAAAATCAGAAAGCAAAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATATCGGAACAGGAATAATGTAc                                                                                                                                       >  2:430503/1‑251 (MQ=255)                                                                                                            ctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATaa                                                                                                                            <  1:328183/249‑1 (MQ=255)                                                                                                                        gtcGGCGCTTACTGCTTAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGCTCTATGTCTCCAGATGACAAACATGATCTTATATCATGTACTTGTTCGCACCTTCCTTAATCCCTATCATAATTGACACAATAAAATCAGCAAGCACATGAAAGTTTCTTACGTAATAATCATTTAAACATTTCGCTTCATCCCGGAACAGTCATTATTTACTAAATTCATATCTCTTACTTTCGa                                                                                                               <  2:415644/248‑1 (MQ=18)                                                                                                                        gACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGAc                                                                                                              >  1:58879/1‑251 (MQ=255)                                                                                                                                 tACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGCTGACTCATGATGAACCCTGTTCTATGGCTCCAGATGTCAAACATGATCTCAAATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCCGAAAGCACAGGTAATTTTCTTACGGAATAATc                                                                                                                                                                                >  2:326776/1‑176 (MQ=18)                                                                                                                                 tACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATc                                                                                                                                                                                <  1:326776/176‑1 (MQ=255)                                                                                                                                  aCTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAata                                                                                                    <  1:65924/251‑1 (MQ=255)                                                                                                                                                        aaGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCt                                                                              <  1:346388/251‑1 (MQ=255)                                                                                                                                                           gTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGGTGGCAAACAAGATCTGCTATCAAGGCCTCATTCGCACCTTCCTTAATCCTTAACATAACTGACACAATCAAACCAGAACGCACAGGAAATTTTCTTACGGAATAATCATGAAAAGATTTCGCTTCATCTCGGAACAGAAATAATGAATTTCACGCATAACGCTTCCTTTCGCCATATTAATTATATGTCAGCAAATATTCATGcatc                                                                            >  1:268446/1‑247 (MQ=255)                                                                                                                                                             aaGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCat                                                                          <  1:225169/250‑1 (MQ=255)                                                                                                                                                                                   ccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACa                                                   <  1:353406/251‑1 (MQ=255)                                                                                                                                                                                       ttCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATTAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACAAAAt                                               >  1:31457/1‑251 (MQ=255)                                                                                                                                                                                           aTGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACAAAATGTaa                                           <  1:128898/251‑1 (MQ=255)                                                                                                                                                                                                  cAGATGACAAACATGATCTCATATCAGGGACTTTTGTGCACCTTCCTTAAACCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTGTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACAAAAGGTAatcatcat                                    <  2:339059/251‑1 (MQ=255)                                                                                                                                                                                                         cAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATTCTTCATGATGATATCGGGATTCAAAAACAAAATGTAATCATCATCTGCggg                             <  1:218747/251‑1 (MQ=255)                                                                                                                                                                                                             cATGATCTCATATCAGGGAATTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATCAAATCAGAACGCACAGGAAATTTTCTTACGGAATAATCATGCAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAACAGCATAACACTTACTATCGACATATTTAATATATGTCATCAAATCATCATGCTTCATGATGATATCGGGATTCAAATCCAAAATGTAATCATAATCTGCGGGttt                          >  2:447443/1‑248 (MQ=255)                                                                                                                                                                                                              aTGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCtat                        <  1:314881/251‑1 (MQ=255)                                                                                                                                                                                                                     cATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCTATAtttt                   <  1:389798/249‑1 (MQ=255)                                                                                                                                                                                                                     cATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACACAAATGACACAAGAAAAGCAGAAAGCACAGGAAATTTTCTTACGGAATAAGCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTGCATGATGATATCGGGATTCAAAAACAAAATGTAATCATCACCTGCGGGTCTATAttttt                  <  1:33066/250‑1 (MQ=255)                                                                                                                                                                                                                       tatCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCTATATTTTTCCt               >  1:218469/1‑251 (MQ=255)                                                                                                                                                                                                                           aggtaCTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGTATTCAAAAACAAAATGTAATCATCATCTGCGGGTCTATATTTTTCCTTTAc           <  2:276644/247‑1 (MQ=255)                                                                                                                                                                                                                                   gTTCGAACCTTCCTTAATCCCTAACATAAATGACACAATAAGATCAGAATGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAACAGCATAACGCTTACTTTCGACATCTTTAATATATGTCAGCAAATCATCATGCTTCATGTTGATATCGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCTATATTTTTCATTTACATAAGcc    >  2:68216/1‑250 (MQ=255)                                                                                                                                                                                                                                    ttCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCTATATTTTTCCTTTACATACGCCAc  >  1:418499/1‑251 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                            CAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCTATATTTTTCCTTTACATACGCCAC  >  NC_000913/2102705‑2103182

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.