New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979271 =	0 (0.000)	25 (0.690)	25/488	0.4	100%	intergenic (‑56/‑482)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	= 2102947	NA (NA)					pseudogene (443/446 nt)	wbbL	interrupted rhamnosyltransferase WbbL

CATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACT  >  NC_000913/1979029‑1979518                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                        agcggataaggtagccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaacataactgt                                                                                                                                                                                                                                                 <  1:112463‑M1/9‑5 (MQ=255)     gtttaggtcgcccgccatttccagccttggggtaaaacggctcgatgacttccaccatgttttgccagggcagaatttgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaagtcactgtctgcgaaggtaagttgatgactcatgatgaacccgtttctatggctccagatgacaaacatgatctcatatcagggacttgttcgtaccttccttaaCATAAAGGtata                                                                                                                                                                                                                                              >  2:410994‑M1/239‑250 (MQ=255)                 ggccattacccgccttggggtaaaacggcgcgatgacttccaccatgtgttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACttttg                                                                                                                                                                                                                                 >  1:212359‑M1/227‑251 (MQ=255)                 ggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagacaatctcttttctggtctgacggcgcttactgctgacttcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATTTATAAGTCATActtttt                                                                                                                                                                                                                                 <  1:231142‑M1/25‑2 (MQ=255)                         ccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGgt                                                                                                                                                                                                                         >  1:5334‑M1/219‑251 (MQ=255)                                                                  ttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaa                                                                                                                                                                                 >  1:412889‑M1/178‑250 (MQ=255)                                                                    gccatggcagaagctgctccatgcgggacaagaaaatctctgtgctggtcggacggcgcttacttctgaatgcactgtcggcgaaggttagttgaagactcatgatgaaccctgttctttggcgccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGATTTGGGAGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaagca                                                                                                                                                                              >  2:231142‑M1/176‑251 (MQ=255)                                                                             gaatctgatccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgatgcaatcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggatccagatgacaaacatgatctcatatcagagactagttcgcaccttccttaaCATAAATGTATCAGTCATACTTTTGTTTTGGATGTATTTCATTCTGTTAAAAAGTTTTTCGCTACGCTCGCAAGCAAAAATGaa                                                                                                                                                                      <  2:257816‑M1/84‑1 (MQ=255)                                                                                      ccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTGTTCGCTACGCTAGCAAGCAAAAAGGAAACAGGaataa                                                                                                                                                            >  1:358329‑M1/158‑251 (MQ=255)                                                                                          gcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCTCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg                                                                                                                                                         >  1:326947‑M1/154‑250 (MQ=255)                                                                                               acaagaaaatctcttttctggtctgacggctcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGATTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg                                                                                                                                                   <  1:56974‑M1/103‑1 (MQ=255)                                                                                                 aagaaaatctctgttcgggtctgactgcgcttacttccgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctggtctatggctccagatgacaaacatgatctcatatcagggacttgttcgcacctttcttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa                                                                                                                                                 >  2:91462‑M1/147‑251 (MQ=255)                                                                                                    aaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGATAGCAAGCAAAAATGAACCAGGAATAATCGAAATGGGATGt                                                                                                                                              <  2:431323‑M1/108‑1 (MQ=255)                                                                                                             tgtctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGca                                                                                                                                        >  1:434024‑M1/135‑248 (MQ=255)                                                                                                                       gacggcgcttactgctgaattcactgtcggcgaatgtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa                                                                                                                            >  1:361108‑M1/125‑250 (MQ=255)                                                                                                                                       taagtcactgtcggcgaaggtaagttgatgactcattatgatccttgttctatggctccataagacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGGATAAGTCATACTGTTGTTTTGGGGGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACACACCGTAaataat                                                                                                             >  2:237825‑M1/109‑249 (MQ=255)                                                                                                                                             actgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCt                                                                                                     <  1:44838‑M1/149‑1 (MQ=255)                                                                                                                                                                  atgactcatgattaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgctccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCTCAGTCAAAATAACTCTCCGTAAATAATCATCTGCTATAAATAATCACGTTCATGCa                                                                                >  1:166500‑M1/82‑251 (MQ=255)                                                                                                                                                                               aaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGc                                                                   <  1:350827‑M1/183‑1 (MQ=255)                                                                                                                                                                                  cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTAt                                                                <  1:11630‑M1/186‑1 (MQ=255)                                                                                                                                                                                                           acatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGcaca                                        <  1:189854‑M1/210‑1 (MQ=255)                                                                                                                                                                                                                    catatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCTCACAACAAACTa                                >  1:112099‑M1/32‑249 (MQ=255)                                                                                                                                                                                                                    catatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACACACTAAt                              <  1:102483‑M1/220‑1 (MQ=255)                                                                                                                                                                                                                     atatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCAAACTTTTGTTTTGGGTGTATTTCAATCTGTTTAAAAGTATTTCGCTACGCTATCAAGCAAAACTGAAACAGGCATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTTTAAATAATCACTTTAATGCAATACCAAATAAACTATTTTTAAACAGACACTTACCGAACAAAAAACAAAtt                             <  2:408508‑M1/221‑1 (MQ=255)                                                                                                                                                                                                                                                 aaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACt  >  1:27617‑M1/3‑250 (MQ=255)                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                        CATTCATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACT  >  NC_000913/1979029‑1979518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.