Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,588,756	Δ970 bp		[ydeS]–[ydeT]	[ydeS], [ydeT]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1588756	1589725	970	64 [0]	[0] 63	[ydeS]–[ydeT]	[ydeS],[ydeT]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1588755	0 (0.000)	63 (0.780)	56/490	0.4	100%	coding (85/531 nt)	ydeS	putative fimbrial protein YdeS
	?	NC_000913	1589726 =	0 (0.000)					coding (276/1149 nt)	ydeT	fimbrial usher domain‑containing protein YdeT

GGAGGCCGTATTGCTTCCTTCATCCAGTTTCAACAAAGTATTATTTTCTGCATCCTCAATAC‑CGTTAAATGCAACCCGAACCCCCGTTGTCCCTTTGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATTTTAATAACGCTATCTGCGGATAAAGCAGAATAGGTGGTTAACCCCAGACATAAACCGAGGAAAATAATGTTATTGTATTTCATAATCTATTGTTCCTTAGCGACAGATTGCTGTCTGCTGGTTCAGTAAGGTACCAGGAGAAACTTCAGGAAGCTTGTACTCGACAATACAGTTTGAGTTTTTATCTTTGCCCCATGAAACCTGTAATTGCCCTGACTGTGGAAGTCCAGTC  >  NC_000913/1588507‑1588988                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                          ggAGGCCGTATTGCTTCCTTCATCCAGTTTCAACAACGTATTAATTTCTGCATCCTCAATAC‑CGTTAAATGCAACCCGAAACCCCGTTGTCCCTTTGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGATTTCTGCTACAGGTCGTTGGACATTGTATGGCGCTGTTTTTTTGAAGATCTACGGGAAAATTAAGCGACTCCGATGAGACTGTGAAGCCATAAGCGAGGCCGCGACCGCTCATgt                                                                                                                                                                                                                                         >  2:92394‑M1/1‑249 (MQ=255)    ggCCGTATTGCTTCCCTCATCCAGTTTCAACAAAGTATTATTTTCTTCATCCTCAATAC‑CGTTAAATGCAACCCGAACCCCCGTTGTCCCTTTGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgtttt                                                                                                                                                                                                                                      <  2:432731‑M1/251‑6 (MQ=255)      ccGTATTGCTTCCTTCATCCAGTTTCAACAAAGTATTATTTTCTGCATCCTCAATAC‑CGTTAAATGCAACCCGAACCCCCGTTGTCCCTTTGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgc                                                                                                                                                                                                                                    <  1:55507‑M1/251‑8 (MQ=255)         tATTGCTTCCTTCATCCAGTTTCAACAAAGTATTATTTTCTGCATCCTCAATAC‑CGTTAAATGCAACCCGAACCCCCGTTGTCCCTTTGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccat                                                                                                                                                                                                                                 >  1:167621‑M1/1‑241 (MQ=255)               ttccttcATCCAGTTTCAACAAAGTATTATTTTCTGCATCCTCAATAC‑CGTTAAATGCACCCCGAACCACAGTTGTCCCTTTGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCAAATCCAATGAGTCTGTGCCGCCATAATCGAGGACGCGCCCGCTAATtttttaccatatatt                                                                                                                                                                                                                            >  2:265968‑M1/1‑235 (MQ=255)               ttccttcATCCAGTTTCAACAAAGTATTATTTTCTGCATCCTCAATAC‑CGTTAAATGCAACCCGAACCCCCGTTGTCCCTTTGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattt                                                                                                                                                                                                                           >  1:172791‑M1/1‑235 (MQ=255)                cccttcATCCAGTTTCAAGCAACTATTATTTTCGGAATCCTCA‑TACACGTTAAATGCACCCCGAACCCCCGTTGACCCTGTGCTGCATTCACTTAACGTAATTTGAAAAGGGACGGCTGGATTTGTTCTGCCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGTGATCTACGGTAAAATTAAGCGAATCCTATTAGACTGTACAGCCATAATCGAGGACGCTCCCGCTAAtgttttgccatatata                                                                                                                                                                                                                            <  2:5559/248‑16 (MQ=255)                    tcATCCAGTTTCAACAAAGTATTATTTTCTGCATCCTCAATAC‑CGTTAAATGCAACCCGAACCCCCGTTGTCCCTTTGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattgg                                                                                                                                                                                                                       <  1:488173‑M1/250‑21 (MQ=255)                      aTCCAGTTTCAACAAAGTATTATTTTCTGCATCCTCAATTC‑CGTTAAATGCACCCCGAACCCCCGTTGTCCCTTTGCTGCATTCACTTAACGTTATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAATATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaat                                                                                                                                                                                                                    <  1:125118‑M1/251‑24 (MQ=255)                               caaccaAGTATTATTTTCTGCATCCTCAATAC‑CGATCAATGCAACCCGCACCCCCGTTGTCCCTTTGCTGCATTCCCTTAACGTAATCTGAAAAGGGACGACTGGACTTGTGCTACCGGTCGTTGGCAATTATCTGGCACTGTTTTTTTGGAGATCTAAGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGCACGCGCCAGCGAAGgttttgccatatattattggactcactatcat                                                                                                                                                                                                           >  2:838805‑M1/1‑219 (MQ=255)                               caaaacagtattaTTTTCTGCATCCTCAATAC‑CGTTAACTGCAACCAGAACCCCAGTTGTCCCTTTGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTCAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTCATgttttgccataaaatattggaatgacggatat                                                                                                                                                                                                           >  2:570929‑M1/7‑219 (MQ=255)                                aactaagtatTTTTTTTTGCATCATTAATAC‑AGTTAAATGCAACCCGACACCCCGTTGTCCCTTTGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCGAACGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTTCGGTAAAATTAAGCGATTCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaatt                                                                                                                                                                                                          <  1:546039‑M1/247‑34 (MQ=255)                                aacaaAGTATTATTTTCTGCATCCTCAATAC‑CGTTAAATGCAACCCGAACCCCCGTTGTCCCTTTGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaatt                                                                                                                                                                                                          >  1:262928‑M1/1‑218 (MQ=255)                                       tattatTTTCTGCATCCTCAATAC‑CGTTAAATGCAACCCGAACCCCCTTTGTCCCTTTGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcga                                                                                                                                                                                                    >  2:241857‑M1/1‑211 (MQ=255)                                       tattatTTTCTGCATCCTCAATAC‑CGTTAAATGCAACCCGAACCCCCGTTGTCCCTTTGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGCTGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcga                                                                                                                                                                                                    >  1:120780‑M1/1‑211 (MQ=255)                                          tattTTCTGCATCCTCAATAC‑CGTTAAATGCAACCCGAACCCCCGTTGTCCCTTTGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCCACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtc                                                                                                                                                                                                >  1:11774‑M1/1‑208 (MQ=255)                                                   cATCCTCAATAC‑CGTTAAATGCAACCCGAACCCCCGTTGTCCCTTTGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgcaatatattattggaatagctgtaattcagcgaagtcgtaatata                                                                                                                                                                                        >  1:110374‑M1/1‑199 (MQ=255)                                                    aTCCTCAATAC‑CGTTAAATGCAACCCGAACCCCCGTTGTCCCTTTGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcac                                                                                                                                                                                      >  2:289003‑M1/1‑198 (MQ=255)                                                         cAATAC‑CGTTAAATGCAACCCGAACCCCCGTTGTCCCTTTGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaac                                                                                                                                                                                 >  1:260422‑M1/1‑193 (MQ=255)                                                                cGTTAAATGCAACCCGAACCCCCGTTGTCCCTTTGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATACGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgacgtcgaaatataaccaaacggaac                                                                                                                                                                            >  2:619390‑M1/1‑187 (MQ=255)                                                                      atgtaacccgAACCCCCGTGGTCCCTTTGTGGCTGTCTCGTAACGTTATTTGAAAAGGGACGGGTGGCCTTGTTCTACCGGTCTTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCTTAATCGAGGACGCGCCCGTTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacattaacc                                                                                                                                                                     <  2:63595‑M1/247‑71 (MQ=255)                                                                      aTGCAACCCGAAACCACGCTGTCCCGTTGCTGCATTCTCTTAACGTAAGCTGAAAAGTTACGGATGGACGTGTGCTACCGGTCGTTGGAAATGGTCTGGCACTGTTTTTTTGGAGATCTACGGGAAAATTACGCGAATCCGATGAGACTTTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaat                                                                                                                                                                     <  2:692026‑M1/251‑71 (MQ=255)                                                                                          tgcccttTGCTTCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAAGTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggt                                                                                                                                                  <  2:458086‑M1/248‑90 (MQ=255)                                                                                               tttGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgc                                                                                                                                            >  1:172397‑M1/1‑156 (MQ=255)                                                                                               tttGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgc                                                                                                                                            >  1:249578‑M1/1‑156 (MQ=255)                                                                                                   ctgcATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGCGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtactatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgc                                                                                                                                        >  2:637796‑M1/1‑152 (MQ=255)                                                                                                     gcATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgaggcg                                                                                                                                      >  2:184234‑M1/1‑150 (MQ=255)                                                                                                          cACTTAACGAAATCTGAAAAGGGCCGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGAACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggactagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttc                                                                                                                                 >  2:508353‑M1/1‑145 (MQ=255)                                                                                                               aaCGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagt                                                                                                                             >  1:43275‑M1/1‑140 (MQ=255)                                                                                                                  gTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaact                                                                                                                         >  1:857907‑M1/1‑137 (MQ=255)                                                                                                                        tGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGAAGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaaatttggcg                                                                                                                   >  2:215089‑M1/1‑131 (MQ=255)                                                                                                                                  cGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactg                                                                                                         <  1:200881‑M1/251‑131 (MQ=255)                                                                                                                                  cGGCTGGACTTGTGCTACCGGTCGCTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGAAGAGACTGTGCAGCCATAATCGAGGAAGAGCCCGCTAATggtttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtacctttggcgactggccctg                                                                                                         >  2:517811‑M1/1‑121 (MQ=255)                                                                                                                                               gCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtac                                                                                            <  1:172039‑M1/251‑144 (MQ=255)                                                                                                                                                         gTTGGAAATTGTATGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCAGCTAATgttttgccatatattattggaatagctgtaattaagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgctatttgctggtcgctgcgtgacgtgttccagtacctttggagactggcactgaaaaatgtcgtacagtaatttcc                                                                                  >  2:160732‑M1/1‑98 (MQ=255)                                                                                                                                                         gTTGGAAATTGACGTGCACTGTTTTGTTGGAGATCTACGGTAAACTTAAGCGAATCCGTTGAGACTCTGCAGCCATAATCGAGGACGCGCCCTCGAATgttttgtcaaatatgagtggaataactgtaattcagcgaagtcgtaatatcaccaaacggcacagtgaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactgtggcgactggcactgcaaaatgtcgtaccgtaatttca                                                                                  <  2:81463‑M1/251‑154 (MQ=255)                                                                                                                                                              aaaTTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagct                                                                             <  1:413233‑M1/251‑159 (MQ=255)                                                                                                                                                                aTTGTCGGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgc                                                                           <  1:272862‑M1/251‑161 (MQ=255)                                                                                                                                                                  tGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgctg                                                                         >  2:168852‑M1/1‑89 (MQ=255)                                                                                                                                                                  ggtttggcaCTGTTTTTGTGGAGAACTACGGTAAAAGTAAGCGAATCCGATAAGACTGTGCATCCATAATCGAGGACGCGCCCGCTAATgtttttccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgct                                                                          <  2:249578‑M1/246‑162 (MQ=255)                                                                                                                                                                   gTCTGGCACTGGTTTTTGGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgctg                                                                         <  2:167621‑M1/250‑163 (MQ=255)                                                                                                                                                                             gTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgctgagagatgctt                                                               <  1:363257‑M1/250‑173 (MQ=255)                                                                                                                                                                             gTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgctgagagatgct                                                                <  1:276827‑M1/249‑172 (MQ=255)                                                                                                                                                                                  tttGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaattgccaagcttctgagagatgcttatttg                                                          <  1:275101‑M1/250‑178 (MQ=255)                                                                                                                                                                                      gagaTCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGTGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctagtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccacgctgctgagagatgcttatttgttcct                                                     >  1:376012‑M1/1‑69 (MQ=255)                                                                                                                                                                                        gatttacgtTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgctgagagatgcttatttgttcctga                                                   <  2:260422‑M1/247‑185 (MQ=255)                                                                                                                                                                                          tCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgctgagcgatgcttatttgttcctgacc                                                 >  2:118728‑M1/1‑65 (MQ=255)                                                                                                                                                                                              cGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgctgagagatgcttatttgttcctgaccacgc                                             >  1:61203‑M1/1‑61 (MQ=255)                                                                                                                                                                                                   aaaTTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgctgagagatgcttatttgttcctgaccacgcttact                                        <  1:637796‑M1/251‑196 (MQ=255)                                                                                                                                                                                                       tAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgctgagagatgcttatttgttcctgaccacgcttactgta                                     <  1:495892‑M1/250‑199 (MQ=255)                                                                                                                                                                                                           cGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtacc                                                                                           <  1:291726‑M1/192‑145 (MQ=255)                                                                                                                                                                                                           cGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtacc                                                                                           >  2:291726‑M1/1‑48 (MQ=255)                                                                                                                                                                                                            gaatcagctgagactgtGCAGCCATAATCGAGGACGCGCCCGATAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgagttccagtaactttggcgactggcactgacaaatgtcgtaccgtaatttccaagctgctgagagatgcttatttgttcctgcccacgcttactgtagaac                                 >  2:525834‑M1/9‑47 (MQ=255)                                                                                                                                                                                                            gAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgctgagagatgcttatttgttcctgaccacgcttactgtagaacag                               <  2:61203‑M1/251‑205 (MQ=255)                                                                                                                                                                                                                  gATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgctgagagatgcttatttgttcctgaccacgcttactgtagaacagattaa                          >  1:587471‑M1/1‑41 (MQ=255)                                                                                                                                                                                                                           tggcaGCCATAATCGAGTGCGCGCCCGCTAATagtttgccatatattattggaatagcggtaaatcagctaagtcttaataccaccaaacggcacatttaatccaaatgagatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcacttaaaaatgtcgtaccgtactttccaagctgcttagagatgcttatttgttcccgaccacgcttactgtataacagattaaaataatcaa                 <  2:837062‑M1/248‑219 (MQ=255)                                                                                                                                                                                                                              cAGCCATAATCGAGGACGCGCCCGGTAATgttttgccatatattattggaatagctgtaaatcagcgaagtcgtaatatctccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgttttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgctgagagatgcttatttgttcctgaccacgcttcctgtagaacagattaaaataatcaataaa             <  1:607662‑M1/251‑223 (MQ=255)                                                                                                                                                                                                                                 ccATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgctgagagatgcttatttgttcctgaccacgcttactgtagaacagattaaaataatcaataaattg          <  1:362168‑M1/251‑226 (MQ=255)                                                                                                                                                                                                                                 ccATAATCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgatccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgctgagagatgcttatttgttcctgaccacgcttactgtagaacagattaaaataatcaataaattg          >  1:54102‑M1/1‑26 (MQ=255)                                                                                                                                                                                                                                     aaTCGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgctgagagatgcttatttgttcctgaccacgcttactgtagaacagattaaaataatcaataaattgtgt       <  1:528535‑M1/250‑229 (MQ=255)                                                                                                                                                                                                                                        cGAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgctgagagatgcttatttgttcctgaccacgcttactgtagaacagattaaaataatcaataaattgtgtctg    <  1:215089‑M1/250‑232 (MQ=255)                                                                                                                                                                                                                                         gAGGACGCGCCCGCTAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgctgagagatgcttatttgttcctgaccacgcttactgtagaacagattaaaataatcaataaattgtgtctgct  <  1:289003‑M1/251‑234 (MQ=255)                                                                                                                                                                                                                                                       tAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgctgagagatgcttatttgttc                                                       >  2:278242‑M1/1‑4 (MQ=255)                                                                                                                                                                                                                                                       tAATgttttgccatatattattggaatagctgtaattcagcgaagtcgtaatatcaccaaacggcacatttaatccaaatgatatttgctggtcgctgcgtgacgtgttccagtaactttggcgactggcactgaaaaatgtcgtaccgtaatttccaagctgctgagagatgcttatttgttc                                                       <  1:278242‑M1/184‑181 (MQ=255)                                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                          GGAGGCCGTATTGCTTCCTTCATCCAGTTTCAACAAAGTATTATTTTCTGCATCCTCAATAC‑CGTTAAATGCAACCCGAACCCCCGTTGTCCCTTTGCTGCATTCACTTAACGTAATCTGAAAAGGGACGGCTGGACTTGTGCTACCGGTCGTTGGAAATTGTCTGGCACTGTTTTTTTGGAGATCTACGGTAAAATTAAGCGAATCCGATGAGACTGTGCAGCCATAATCGAGGACGCGCCCGCTAATTTTAATAACGCTATCTGCGGATAAAGCAGAATAGGTGGTTAACCCCAGACATAAACCGAGGAAAATAATGTTATTGTATTTCATAATCTATTGTTCCTTAGCGACAGATTGCTGTCTGCTGGTTCAGTAAGGTACCAGGAGAAACTTCAGGAAGCTTGTACTCGACAATACAGTTTGAGTTTTTATCTTTGCCCCATGAAACCTGTAATTGCCCTGACTGTGGAAGTCCAGTC  >  NC_000913/1588507‑1588988

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑