| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,704,350 | Δ390 bp | blr | blr | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1704350 | 1704739 | 390 | 21 [0] | [4] 25 | blr | blr |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1704349 | 0 (0.000) | 21 (0.490) | 21/482 | 1.0 | 93.3% | intergenic (‑41/‑202) | ydgJ/blr | putative oxidoreductase YdgJ/beta‑lactam resistance protein |
| ? | NC_000913 | 1704740 = | 3 (0.070) | intergenic (+64/‑209) | blr/cnu | beta‑lactam resistance protein/H‑NS‑ and StpA‑binding protein | |||||
ATCGTTAAACAGATGCTTCGGCTCAGAGACAACCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACTGCTGGAGATTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTATCCTTTACCCACGCTCAACAGTTTAATAACCTGCCAGCAATAAGGGATGTTGTTTAACTTAAGTCAAAAAAATAGCGAATTTTCCAACGACAAAAGCTAAATATCGCAAAAACCTCAGTAAAAATCTTGCTGGAGCTATTATTGCTAAGTAACATTTACCCCCTGAAGTTAATGGATCAATCAAGAGAGATGTGGGCTGTAATGAATCGTCTTATTGAATTAACAGGTTGGATCGTTCTTGTCGTTTC > NC_000913/1704123‑1704597 | aTCGTTAAACAGATGCTTCGGCTCAGAGACAACCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACTGCTGGAGATTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttc < 1:175104‑M1/251‑25 (MQ=255) ttAAACAGATGTTGCGGCTCAGAGACAACCGATACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCACCACTGCGGGAGATGACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcg < 2:52083‑M1/248‑26 (MQ=255) gCTCAGAGACAACCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACTGCTGGAGATTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtc > 1:376361‑M1/1‑207 (MQ=255) ccgtacccgtTGGCCAGTCGGCTTTTGCTTTGGTTTCATCCCTGCTGGAGATTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaag < 2:196049‑M1/251‑57 (MQ=255) aGTCGTCTTTTACTTTTGTTTCACCACTGCGGGAGATTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttc < 1:257575‑M1/251‑72 (MQ=255) gCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcatt > 1:15972‑M1/1‑139 (MQ=255) ccTGCCCGGGCGTGCCCACAATCAGGGGCGCATGGAAGGTTTTGCTCGCATCACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGTCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttgttgattgtacgggatagtaaagcgcgttactcttttcagagaagtttttcatccctgaatatttgccatcagctcattattattt > 2:299206‑M1/1‑132 (MQ=255) gCCCGGGCGAGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattat < 2:376361‑M1/249‑121 (MQ=255) ccGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccatgaatttatta < 2:440978‑M1/143‑17 (MQ=255) ccGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttatta > 1:440978‑M1/1‑127 (MQ=255) gggCGCGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCTCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaat < 1:78819‑M1/251‑127 (MQ=255) aTACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacc > 1:459175‑M1/1‑77 (MQ=255) aCCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttgg < 1:318223‑M1/251‑186 (MQ=255) acGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaat > 1:114985‑M1/1‑59 (MQ=255) gtCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaattattttatg < 2:181058‑M1/251‑202 (MQ=255) aTGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaattattttatggaccttt > 2:209293‑M1/1‑43 (MQ=255) gAAGTATGATGGCTATTTGACACTAaaccaggaatctattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaattattttatggaccttttatgactgttcaggacta < 1:104289‑M1/251‑227 (MQ=255) aaGTATGATGGCTATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaattattttatggaccttttatgactgttcaggactac > 2:130488‑M1/1‑24 (MQ=255) tATTTGACACTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatacctgaatatttgccatcagcgcattcttattattgtaataacaaaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaattattttatggaccttttatgactgttcaggactacttattaaaattt > 2:374581‑M1/1‑12 (MQ=255) aTTTGACACTAacccaggaatttattttcttgtgcgatgttgttggttattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataataccttcccctttggtattaattattttatggtccttttatgactgttcaggactacttattaaaattt < 2:464397‑M1/250‑240 (MQ=255) cTAaaccaggaatttattatcttgttcgatgttgttggtgattgtcagggatagtaaagcgcgttactcttttcagagcagtttttcatccctgaatatttgccatcagcgcattcttattattgtaataacacaagcgttcacttttggtgaaattttatcatcactaataatacctacccctttggtattaattattttatggaccttttatgactgttcaggactacttattaaaatttcgcaaaatc > 1:337241‑M1/1‑3 (MQ=255) | ATCGTTAAACAGATGCTTCGGCTCAGAGACAACCGTAACCGTTGGCCAGTCGGCTTTTACTTTTGTTTCATCACTGCTGGAGATTACCGCCAGTTCCTGCCCGGGCGTGCCCGCAATCAGGGGCGCATGGAAGGTTTTGCTCGCATAACCATACCCAATCAACCCAACACGGATGTTGTCGCTCATGTCATTGCCTCTCATTGAAGTATGATGGCTATTTGACACTATCCTTTACCCACGCTCAACAGTTTAATAACCTGCCAGCAATAAGGGATGTTGTTTAACTTAAGTCAAAAAAATAGCGAATTTTCCAACGACAAAAGCTAAATATCGCAAAAACCTCAGTAAAAATCTTGCTGGAGCTATTATTGCTAAGTAACATTTACCCCCTGAAGTTAATGGATCAATCAAGAGAGATGTGGGCTGTAATGAATCGTCTTATTGAATTAACAGGTTGGATCGTTCTTGTCGTTTC > NC_000913/1704123‑1704597 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |