| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,628,621 | Δ6,226 bp | ettA–[rob] | ettA, slt, trpR, yjjX, ytjC, [rob] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4628621 | 4634846 | 6226 | 37 [1] | [0] 36 | ettA–[rob] | ettA,slt,trpR,yjjX,ytjC,[rob] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4628620 | 1 (0.020) | 36 (0.700) | 33/488 | 0.6 | 98.6% | intergenic (+73/+235) | nadR/ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| ? | NC_000913 | 4634847 = | 0 (0.000) | coding (464/870 nt) | rob | DNA‑binding transcriptional dual regulator Rob | |||||
TCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCGGTATTGCAGCGCGATGTCCAGAA > NC_000913/4634598‑4635093 | cggatggtttacgcagcctcggcagttcggtggatcgcaaagagttccagaacttgctggtggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaatattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagagga > 1:538089‑M2/250‑250 (MQ=255) cagttcggtggatcgcaaagagttccagaacttgctggtggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGa > 1:290060‑M2/228‑250 (MQ=255) ggatctcaaagagttccagaacttgctggtggagatgctcgaagagaacaatatcgaagttgcgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataatcgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAg < 1:161557‑M2/33‑1 (MQ=255) ggatcgcaaagagttccagaacttgctggtggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGt > 1:164414‑M2/219‑249 (MQ=255) gatcgcaaagagttccagaacttgctggtggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGc > 1:295510‑M2/218‑251 (MQ=255) aagagttccagatcttgctggtggagatgctcgaagagaacaatatcgaatttgttcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggatctggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaagtcgaggtataaaatgagtttttttgatgagttgaaaacctctctgtaagaggATATCAGAGATCTGCTCCAGCGAACAGGAGTAGCTCTGGGt < 1:481136‑M2/41‑1 (MQ=255) agagttccagaacttgctggtggagatgctcgaagagaacaatatcgactttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaagggcgagggatcaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGTTTTGCTCCAGCGAACAggattagcccagggt > 2:186524‑M2/210‑243 (MQ=255) gagcttgctggtggagtttctctaagagaacaagatcgaatttttgcgggttgaagatgaagattacgacagtcgtttcctgcgctgcgttgaactggtgctggagattatgggggagcagagataaccgttatgaaactgctcaaaggcgaggtataaaatgagtgtttttgattagttgaaaacctatctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGTAGTAGCTCTGGGTAACACCaa < 2:26822‑M2/49‑1 (MQ=255) gaacttgctggtggagatgctcgaagagaacaatagcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtgtttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATc < 1:378998‑M2/51‑1 (MQ=255) accttgcgggtggagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttccttcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCa < 2:1985‑M2/52‑1 (MQ=255) gagatgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCtt < 1:105275‑M2/64‑1 (MQ=255) tgctcgaagagaacaatatcgaatttgtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgctgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTACCACCAATCAGCGGCGTATCTTcc > 1:382059‑M2/184‑249 (MQ=255) acaatatcgaatttgggcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAAttt < 2:216967‑M2/80‑1 (MQ=255) gtgcgggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCAt > 1:76168‑M2/158‑249 (MQ=255) gggttgaagaggaagattacgacagtcgtttcctgagctgcgtggaactggagcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgcggtataaaatgagtttttttgatgagttgaacacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGATCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGgcataacga > 2:273207‑M2/154‑246 (MQ=255) ggttgaagaggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAAt < 2:511179‑M2/99‑1 (MQ=255) ggaagattacgacagtcgtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTAGCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAgg < 1:471015‑M2/108‑1 (MQ=255) gggggttttctgcgctgcgtggaactggtgatggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgattagttgaaaacctcgctggaagaggAAAGCAGAGAGTTGCTCCAGCGAACAGGATTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCggcgggc < 2:432222‑M2/121‑1 (MQ=255) gtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAggg > 1:225391‑M2/127‑196 (MQ=255) gtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGtagcggcgggggga > 1:166992‑M2/127‑246 (MQ=255) gtttcctgcgctgcgtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTGCCAggg < 2:225391‑M2/70‑1 (MQ=255) tgcgtggaactggagcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCCTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAAttcacccaggcgtagcggcggggggagaacaaaagcgg > 1:418438‑M2/116‑235 (MQ=255) gtggaactggtgcgggagatgatgggggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGAGCTcc < 1:186524‑M2/139‑1 (MQ=255) gaactggtgcgggagatgatgggggagcagagataaccgttatgaagctgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCCTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCAtt < 2:3152‑M2/142‑1 (MQ=255) ggggcgggggatgattggggagcatagattaccgtgatgaaactgctctaaggtgaggtataaaatgagattttttgatgaggttaaaacctctctggaagaggATATCAGAGATTTGCTCCAGCGAACAGGCGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCTCCCAAGCGTAGTGGCGGGCGAATACCAAAGGCGCTTCATTcagca < 2:152988‑M2/147‑3 (MQ=255) atgatgtgggagcagagataaccgtgatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAAGCGCTCCCTTCAGGAGAacggcggg > 1:464678‑M2/95‑250 (MQ=255) gatgaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACt < 1:280191‑M2/181‑1 (MQ=255) gaaactgctcaaaggcgaggtataaaatgagtttttttgatgagttgaaaacctctctggaagatgAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCTGTAAAGTGCAGGAGTCTGGGCAAACTGctt < 1:122584‑M2/185‑1 (MQ=255) gtgtataaaatgagtttttttgattagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATGTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCTGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCTCGGGTaa < 2:433005‑M2/202‑1 (MQ=255) aaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTTCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCt < 1:300870‑M2/208‑1 (MQ=255) aaaatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCt < 1:98021‑M2/208‑1 (MQ=255) aatgagtttttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGt < 1:70602‑M2/210‑1 (MQ=255) tttttgattagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGt < 2:472382‑M2/217‑1 (MQ=255) ttttgatgagttgaaaacctctctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTc < 1:365213‑M2/218‑1 (MQ=255) ctggaagaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACAACAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGTTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCGGTATTGCAGCGCGAt < 1:352042‑M2/239‑1 (MQ=255) gaggAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGTGCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACAAAAGGCGTTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCGGTATTGCATCGCGATGTCCAGaa < 2:425743‑M2/247‑1 (MQ=255) | TCCTGCACGCCGGTTCCCAGACCTTCATAGGTAAACATCACATATTCGCCGCCCTGCAGCATCACCGGATGCCCCGTCAGTACATAGCCATCTGCCTGATCCTGGGCTAACGCGGTGGTATAGAATACCTCTTGCTCGTCGTCTTTATCCTGACTCGGACGCGTTTCATTCAGGCCGTAGAGCACCGGCGGAATGGTCGGCGCGTTGCCGAGAAAATCGTGCCAGAACTGATAACGCATTTCATGGCGGAAATCAGAGATTTGCTCCAGCGAACAGGAGTAGCTCTGGGTAACACCAATCAGCGGCGTATCTTCCAGGGTGACAAATTTGTGCTCTGGCATAGTGAATTCACCCAGGCGTAGCGGCGGGCGAATACCAAAGGCGCTCCATTCAGGAGAACGGCGGTAAAGTGCAGGAGTCTGGGCAAACTGCTTCTTGAATGCGCGGGTAAATGTCTGTTGAGAGTCGAAGCGGTATTGCAGCGCGATGTCCAGAA > NC_000913/4634598‑4635093 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |