| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,628,621 | Δ6,226 bp | ettA–[rob] | ettA, slt, trpR, yjjX, ytjC, [rob] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4628621 | 4634846 | 6226 | 37 [1] | [0] 36 | ettA–[rob] | ettA,slt,trpR,yjjX,ytjC,[rob] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4628620 | 1 (0.020) | 36 (0.700) | 33/488 | 0.6 | 98.6% | intergenic (+73/+235) | nadR/ettA | DNA‑binding transcriptional repressor/NMN adenylyltransferase NadR/energy‑dependent translational throttle protein EttA |
| ? | NC_000913 | 4634847 = | 0 (0.000) | coding (464/870 nt) | rob | DNA‑binding transcriptional dual regulator Rob | |||||
CGGATGGTTTACGCAGCCTCGGCAGTTCGGTGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATA > NC_000913/4628372‑4628867 | cGGATGGTTTACGCAGCCTCGGCAGTTCGGTGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAATATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGa > 1:538089‑M1/1‑249 (MQ=255) cAGTTCGGTGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcga > 1:290060‑M1/1‑227 (MQ=255) ggATCTCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAAGTTGCGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAATCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtag < 1:161557‑M1/251‑34 (MQ=255) ggATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagt > 1:164414‑M1/1‑218 (MQ=255) gATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagc > 1:295510‑M1/1‑217 (MQ=255) aaGAGTTCCAGATCTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTTCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGATCTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGTCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGTAAGAGGatatcagagatctgctccagcgaacaggagtagctctgggt < 1:481136‑M1/251‑42 (MQ=255) agagTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGACTTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAGGGCGAGGGATCAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagttttgctccagcgaacaggattagcccagggt > 2:186524‑M1/1‑209 (MQ=255) gagcttgCTGGTGGAGTTTCTCTAAGAGAACAAGATCGAATTTTTGCGGGTTGAAGATGAAGATTACGACAGTCGTTTCCTGCGCTGCGTTGAACTGGTGCTGGAGATTATGGGGGAGCAGAGATAACCGTTATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTGTTTTTGATTAGTTGAAAACCTATCTGGAAGAGGaaatcagagatttgctccagcgaacagtagtagctctgggtaacaccaa < 2:26822‑M1/246‑50 (MQ=255) gAACTTGCTGGTGGAGATGCTCGAAGAGAACAATAGCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTGTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatc < 1:378998‑M1/251‑52 (MQ=255) accttGCGGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTTCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatca < 2:1985‑M1/249‑53 (MQ=255) gagaTGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatctt < 1:105275‑M1/251‑65 (MQ=255) tGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGCTGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaccaccaatcagcggcgtatcttcc > 1:382059‑M1/1‑183 (MQ=255) aCAATATCGAATTTGGGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatcttccagggtgacaaattt < 2:216967‑M1/251‑81 (MQ=255) gtgCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatcttccagggtgacaaatttgtgctctggcat > 1:76168‑M1/1‑157 (MQ=255) gggTTGAAGAGGAAGATTACGACAGTCGTTTCCTGAGCTGCGTGGAACTGGAGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGCGGTATAAAATGAGTTTTTTTGATGAGTTGAACACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagatctgggtaacaccaatcagcggcgtatcttccagggtgacaaatttgtgctctggcataacga > 2:273207‑M1/1‑153 (MQ=255) ggTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatcttccagggtgacaaatttgtgctctggcatagtgaat < 2:511179‑M1/251‑100 (MQ=255) ggAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtagcttccagggtgacaaatttgtgctctggcatagtgaattcacccagg < 1:471015‑M1/251‑109 (MQ=255) gggggttttCTGCGCTGCGTGGAACTGGTGATGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATTAGTTGAAAACCTCGCTGGAAGAGGaaagcagagagttgctccagcgaacaggattagctctgggtaacaccaatcagcggcgtatcttccagggtgacaaatttgtgctctggcatagtgaattcacccaggcgtagcggcgggc < 2:432222‑M1/247‑122 (MQ=255) gTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatcttccagggtgacaaatttgtgctctggcatagtgaattcacccaggcgtagcggcgggggga > 1:166992‑M1/1‑126 (MQ=255) gTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatcttccaggg > 1:225391‑M1/1‑126 (MQ=255) gTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatctgccaggg < 2:225391‑M1/196‑71 (MQ=255) tgcgTGGAACTGGAGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatcctccagggtgacaaatttgtgctctggcatagtgaattcacccaggcgtagcggcggggggagaacaaaagcgg > 1:418438‑M1/1‑115 (MQ=255) gTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatcttccagggtgacaaatttgtgctctggcatagtgaattcacccaggcgtagcggcgggcgaataccaaaggagctcc < 1:186524‑M1/251‑140 (MQ=255) gAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTTATGAAGCTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatcctccagggtgacaaatttgtgctctggcatagtgaattcacccaggcgtagcggcgggcgaataccaaaggcgctccatt < 2:3152‑M1/251‑143 (MQ=255) ggggcggGGGATGATTGGGGAGCATAGATTACCGTGATGAAACTGCTCTAAGGTGAGGTATAAAATGAGATTTTTTGATGAGGTTAAAACCTCTCTGGAAGAGGatatcagagatttgctccagcgaacaggcgtagctctgggtaacaccaatcagcggcgtatcttccagggtgacaaatttgtgctctggcatagtgaattctcccaagcgtagtggcgggcgaataccaaaggcgcttcattcagca < 2:152988‑M1/248‑148 (MQ=255) atgatgTGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatcttccagggtgacaaatttgtgctctggcatagtgaattcacccaggcgtagcggcgggcgaataccaaaagcgctcccttcaggagaacggcggg > 1:464678‑M1/1‑94 (MQ=255) gatgaAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatcttccagggtgacaaatttgtgctctggcatagtgaattcacccaggcgtagcggcgggcgaataccaaaggcgctccattcaggagaacggcggtaaagtgcaggagtctgggcaaact < 1:280191‑M1/250‑182 (MQ=255) gaAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGATGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatcttccagggtgacaaatttgtgctctggcatagtgaattcacccaggcgtagcggcgggcgaataccaaaggcgctccattcaggagaacggctgtaaagtgcaggagtctgggcaaactgctt < 1:122584‑M1/251‑186 (MQ=255) gCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACACCGTATTGAAATTGCTGGTTTTGTAGGCCgg > 2:21258/1‑251 (MQ=255) gtgtaTAAAATGAGTTTTTTTGATTAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatcttccagggtgacaaatgtgtgctctggcatagtgaattcacccaggcgtagcggcgggcgaataccaaaggcgctccattcaggagaacggctgtaaagtgcaggagtctgggcaaactgcttcttgaatgctcgggtaa < 2:433005‑M1/249‑203 (MQ=255) aaaaTGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatctttcagggtgacaaatttgtgctctggcatagtgaattcacccaggcgtagcggcgggcgaataccaaaggcgctccattcaggagaacggcggtaaagtgcaggagtctgggcaaactgcttcttgaatgcgcgggtaaatgtct < 1:300870‑M1/251‑209 (MQ=255) aaaaTGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatcttccagggtgacaaatttgtgctctggcatagtgaattcacccaggcgtagcggcgggcgaataccaaaggcgctccattcaggagaacggcggtaaagtgcaggagtctgggcaaactgcttcttgaatgcgcgggtaaatgtct < 1:98021‑M1/251‑209 (MQ=255) aaTGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatcttccagggtgacaaatttgtgctctggcatagtgaattcacccaggcgtagcggcgggcgaataccaaaggcgctccattcaggagaacggcggtaaagtgcaggagtctgggcaaactgcttcttgaatgcgcgggtaaatgtctgt < 1:70602‑M1/251‑211 (MQ=255) tttttGATTAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatcttccagggtgacaaatttgtgctctggcatagtgaattcacccaggcgtagcggcgggcgaataccaaaggcgctccattcaggagaacggcggtaaagtgcaggagtctgggcaaactgcttcttgaatgcgcgggtaaatgtctgttgagagt < 2:472382‑M1/250‑218 (MQ=255) ttttGATGAGTTGAAAACCTCTCTGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaccaatcagcggcgtatcttccagggtgacaaatttgtgctctggcatagtgaattcacccaggcgtagcggcgggcgaataccaaaggcgctccattcaggagaacggcggtaaagtgcaggagtctgggcaaactgcttcttgaatgcgcgggtaaatgtctgttgagagtc < 1:365213‑M1/250‑219 (MQ=255) ctGGAAGAGGaaatcagagatttgctccagcgaacaggagtagctctgggtaacaacaatcagcggcgtatcttccagggtgacaaatttgtgctctggcatagtgaattcacccaggcgtagcggcgggcgaataccaaaggcgctccattcaggagaacggcgttaaagtgcaggagtctgggcaaactgcttcttgaatgcgcgggtaaatgtctgttgagagtcgaagcggtattgcagcgcgat < 1:352042‑M1/249‑240 (MQ=255) gagGaaatcagagatttgctccagcgaacaggagtagtgctgggtaacaccaatcagcggcgtatcttccagggtgacaaatttgtgctctggcatagtgaattcacccaggcgtagcggcgggcgaatacaaaaggcgttccattcaggagaacggcggtaaagtgcaggagtctgggcaaactgcttcttgaatgcgcgggtaaatgtctgttgagagtcgaagcggtattgcatcgcgatgtccagaa < 2:425743‑M1/251‑248 (MQ=255) | CGGATGGTTTACGCAGCCTCGGCAGTTCGGTGGATCGCAAAGAGTTCCAGAACTTGCTGGTGGAGATGCTCGAAGAGAACAATATCGAATTTGTGCGGGTTGAAGAGGAAGATTACGACAGTCGTTTCCTGCGCTGCGTGGAACTGGTGCGGGAGATGATGGGGGAGCAGAGATAACCGTGATGAAACTGCTCAAAGGCGAGGTATAAAATGAGTTTTTTTGATGAGTTGAAAACCTCTCTGGAAGAGGCTGTCGAGATTAAACAAGGTTTGAAAAAACCTGCACGGGTGACCCGCCACGAAATTGAGGATGCTAAGGCTGTTGTAGACCGGAAACGGTGTTCACGCCGCATCCGGCATTCGGTGCTCAATGCCTGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATA > NC_000913/4628372‑4628867 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |