New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979271 =	0 (0.000)	18 (0.430)	17/482	1.0	100%	intergenic (‑56/‑482)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	= 2102947	NA (NA)					pseudogene (443/446 nt)	wbbL	interrupted rhamnosyltransferase WbbL

GTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCTATATTTTTCCTTTACATACGCCACCG  >  NC_000913/2102700‑2103184                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                              gTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATcc                                                                                                                                                                                                                                            >  1:73053/1‑251 (MQ=11)   ttCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATccc                                                                                                                                                                                                                                           <  1:163383/250‑1 (MQ=31)              aaGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGa                                                                                                                                                                                                                               <  2:185889/251‑1 (MQ=35)                                   ccTTGGGGTAAATCGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTATGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATATAATCAGAAAgaac                                                                                                                                                                                                          >  2:354693/1‑248 (MQ=255)                                       ggggTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAgg                                                                                                                                                                                                       >  1:58413/1‑250 (MQ=255)                                            aaaaCGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGACCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAAGGACACAATAAAATCAGAAAGCACAGGaaagtt                                                                                                                                                                                                 <  2:359675/251‑4 (MQ=255)                                                cGGCTCGATGACTTCCACCATGTTTTGCTATGGCATAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCGGGTCTGACGGCGCGTACTGCTGAATTCACTGTCGGCGAAGGTATGTTTATGACTCATTATGAACCTTGGTCTATGTCTCCGGATGACAAACATGATCTCAGATCAGGGACTGGTTCGCATCTTCCTTAAGCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCtt                                                                                                                                                                                             <  1:57409/251‑1 (MQ=17)                                                                                 cAGAATCAGCTCCATGCGGGACAAGAAAATCTCGTTTCTGGTCTGACGGCGCTTACTGCTTAATTCACTGTCGGCGAAGGTAAGTTGATGAATCATGATGAACCCTGTTCTAGGGCTCCAGATGACAAACATGAACTCATATCAGGGACTGGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATGTTCATACGGAATAATCATGTAAATAATTCGCTTCAtct                                                                                                                                                            <  2:283661/251‑1 (MQ=18)                                                                                          cTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACAGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAgg                                                                                                                                                   >  1:35411/1‑251 (MQ=255)                                                                                                          aaaaTCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAg                                                                                                                                   <  2:126255/251‑1 (MQ=255)                                                                                                            aaTCTCTTTTCTGGTCTGACGGCGCTTACTCCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACACATCATGACACCTGTCATATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTAGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAAAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATATCGGAACAGGCATAATGAACTAAAAGc                                                                                                                                  >  1:402753/1‑250 (MQ=21)                                                                                                                        ggTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGTTAAGTTGATGACTCATGATGAACCCTGTTCTATTGCTCCAGATGACAAACAGGATCTCATATCAGGTACTTGTTCGCACCTTCCTTAAGCCCTAACATAAATGACTCAATAAAATCGGAAAGCACAGGAAATTTGCTTACGGAATAATCATGTAAAGATGTCGCTTCATCTCGTAACAGGCATAATGTACTATAAGCAGAACGCTTa                                                                                                                        <  1:271393/248‑1 (MQ=21)                                                                                                                        ggTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTAc                                                                                                                       <  2:82524/249‑1 (MQ=255)                                                                                                                               cGGCGCTTACTGCTGAATTCACTGTCGGCGCAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTACTCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACat                                                                                                              >  1:352537/1‑251 (MQ=255)                                                                                                                                                   aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTCTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGAATTGTTCGCCCCTTCCTTAATCCCTATCATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAAGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTCAATATATGTCAGCata                                                                                          <  2:319723/251‑3 (MQ=37)                                                                                                                                                         ggCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTTGACATATTTAATATATGTCAGCAAAgcatca                                                                                    <  2:182458/251‑1 (MQ=255)                                                                                                                                                                    gTTGATGCCTCATGATGACCACTGTTCTATGTCTACAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGAAACAATAAAATCAGCAAGCACAGGAAATTTTCTTACGGAATAATCCTGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCatgat                                                                         >  2:191356/1‑251 (MQ=38)                                                                                                                                                                           aCTCATGATGATCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTGCCTTAATCCCTAACATAAAGGACACAAAAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTGCTAAAAGCATAACGCTTACTTTCTACTTATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCg                                                                  <  1:29842/251‑1 (MQ=38)                                                                                                                                                                               atgatgAACCCTGTTCTATGGCTACAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTTCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGAGTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGAt                                                              <  2:352537/251‑1 (MQ=255)                                                                                                                                                                                                                                  ggACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGAAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAAAGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCTATATTTTTCCTTTACAt           >  1:42191/1‑251 (MQ=255)                                                                                                                                                                                                                                           cGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCTATATTTTTCCTTTACATACGCCAcc   <  2:341540/250‑1 (MQ=255)                                                                                                                                                                                                                                           cGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACAAAATGTAATCATCAGCTGCGGGTCTATATTTTTCCTTTACATACGCCACCg  <  1:4326/251‑1 (MQ=255)                                                                                                                                                                                                                                               ccttccttAATCCCTACCATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAat                                                                                         >  1:327729/1‑160 (MQ=255)                                                                                                                                                                                                                                               ccttccttAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAat                                                                                         <  2:327729/160‑1 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                              GTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGGGGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGTCAGCAAATCATCATGCTTCATGATGATATCGGGATTCAAAAACAAAATGTAATCATCATCTGCGGGTCTATATTTTTCCTTTACATACGCCACCG  >  NC_000913/2102700‑2103184

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.