New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979271 =	0 (0.000)	18 (0.430)	17/482	1.0	100%	intergenic (‑56/‑482)	insA5/uspC	IS1 family protein InsA/universal stress protein C
	?	NC_000913	= 2102947	NA (NA)					pseudogene (443/446 nt)	wbbL	interrupted rhamnosyltransferase WbbL

CATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGC  >  NC_000913/1979033‑1979507                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                             gataaggtcgccggccattaccagccatggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatttgctccaagcgggacaagaaaatctcttttcgggtctgacgtcgcttactgctgaattcactgtcggcgaacgtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATaa                                                                                                                                                                                                                                  >  1:317968‑M1/239‑251 (MQ=255)      ggtcgccggccattaccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCAt                                                                                                                                                                                                                             >  1:2852‑M1/234‑251 (MQ=255)                   taccagccttggggtaaaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACttttgttttg                                                                                                                                                                                                                 >  1:8848‑M1/221‑250 (MQ=255)                                gtaaaacggcgcgatgacgtccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgatggcgcttactgctgaattcactgtcggcgaaggtaagttgatggctcatgatgaatcctgttctatggctccagatgacaaacatgatctcatagcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATc                                                                                                                                                                                                   >  1:198368‑M1/208‑251 (MQ=255)                                   aaacggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt                                                                                                                                                                                                <  1:45531‑M1/47‑1 (MQ=255)                                      cggctcgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaa                                                                                                                                                                                             >  1:176723‑M1/202‑251 (MQ=255)                                           cgatgacttccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGGCATACTTTTGTGTTGGGTGTATTTCAATCTGTTAAAAAGt                                                                                                                                                                                        >  2:136892‑M1/197‑251 (MQ=255)                                                    ccaccatgttttgccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgct                                                                                                                                                                                >  2:300331‑M1/188‑250 (MQ=255)                                                                 ccatggcagaatctgctccatgcgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTTCGCTAgcaagcaa                                                                                                                                                                  >  1:89106‑M1/175‑251 (MQ=255)                                                                                       cgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt                                                                                                                                                                                                    >  2:295972‑M1/153‑195 (MQ=255)                                                                                       cgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt                                                                                                                                                                                                    <  1:295972‑M1/43‑1 (MQ=255)                                                                                       cgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcaatgtcggcgaaggtaagttgatgactcatgataaatcctgttctatggctccagataaaaaacatgatctcataacagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAACGTTTTTAGCTACGCTAGCAAGCAAAAATgaaacaggactactcga                                                                                                                                             <  1:393446‑M1/98‑9 (MQ=255)                                                                                                           tctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGt                                                                                                                         >  2:302994‑M1/133‑250 (MQ=255)                                                                                                              gggctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCa                                                                                                                       >  2:113887‑M1/130‑249 (MQ=255)                                                                                                               gtctgccggcgcctactgctggatacactgtcggcgaaggaaagttgatgcctaatgatgaatcctgttctatggcttcagatgacaaccctgatctcatatcagggacttgttcgcaccttccttaaCATAACTGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTATTCGCTACGCTAGCAAGCAAACATGAAACAGCAATAATCGAAATGGGATGTTGCGCACAGTCaaa                                                                                                                     <  2:205658‑M1/122‑1 (MQ=255)                                                                                                                     cggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTc                                                                                                              <  2:365044‑M1/129‑1 (MQ=255)                                                                                                                                                   aaggcaagttgatgactcatgatgaatcctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccttaaCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATc                                                                                <  2:71156‑M1/159‑1 (MQ=255)                                                                                                                                                                                                                                 cgcaccttccttaaCATAAATGTATAAATCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGc  >  1:386459‑M1/15‑251 (MQ=255)                                                                                                                                                                                                                                               |                                                                                                                                                                                                                                             CATGGCCATATCAATGATTTTCTGGTGCGTACCGGGTTGAGAAGCGGTGTAAGTGAACTGCAGTTGCCATGTTTTACGGCAGTGAGAGCAGAGATAGCGCTGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGC  >  NC_000913/1979033‑1979507

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.