New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1633132 =	0 (0.000)	21 (0.670)	21/484	0.4	100%	coding (61/234 nt)	ydfK	cold shock protein YdfK
	?	NC_000913	2101749 =	NA (NA)					noncoding (1195/1195 nt)	IS5	repeat region

GCTATATGAACAGCATACTGATAATCACATCTCTCCTTATCATATTCAGCATTTTTAGTCATGCCCTAATAAAATTAGGGATTGGCATATCCAATAACCCAGACAAAACCGATGTATAAGTCAACATATCCTGAATCAGACATACAATATCGCAATGAAAATCAATAATATTTTAAGGAATATCTTCATGAAATCAAAAGACACCCTAAAGTGGTTCCCTGCGCAGCTTCCTGAAGTAAGAATTATCCTAGGGGATGCTGTAGTGGAAGTAGCAAAACAGGGAAGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTATTACAAACAGCGATATCAGTTCTTAAAGACAACCAAAATTTAAATGGTAAAATGTAATATAATAAACTTACTTTTTTATCATTTTTCCACTTTAACAACATTTTGCTCCACTTTTCCACGACCAAAC  >  NC_000913/1632885‑1633375                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                    aggggttgctgaaaaacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAg                                                                                                                                                                                                                                                  >  1:222643‑M1/248‑251 (MQ=255)               aacgataaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGGGGATGCTGTAGTg                                                                                                                                                                                                                                    >  1:3513‑M1/234‑251 (MQ=255)                     aaccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatgtccccgcttattcgcaccttccCTAGGGTAGGCTGTAGTGGAAGTa                                                                                                                                                                                                                              >  2:196045‑M1/228‑251 (MQ=255)                       ccaactggcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaagtgactgagtcagccgagaagaatttcaccgcttattcgcaccttccCTAGGGGATGCTGGAGTGGAAGTAGc                                                                                                                                                                                                                            >  2:257247‑M1/226‑251 (MQ=255)                              gcgatgttattcacgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGGGGATGCTGTAGTGGAAGTagcaacac                                                                                                                                                                                                                       <  2:129468‑M1/31‑4 (MQ=255)                                   gttattcccgctggccaacctgtttcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggctaacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccATAGGGGATGCTGTAGTGGAAGTAGCAAAACAGGGa                                                                                                                                                                                                                  <  2:18212‑M1/36‑1 (MQ=255)                                                 ccaacctgtgtcgggcggaccaaatgatacgtcagtgggagagatctcactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGTGGATGCTGTAGTGGAAGTAGCAAAACAGGGAAGACCTATCAATACCa                                                                                                                                                                                                  >  2:245754‑M1/200‑251 (MQ=255)                                                                                                cactaaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGGGGATGCTGTAGTGGAAGTAGCAAAACAGGGAAGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATgg                                                                                                                                                   <  1:205197‑M1/99‑1 (MQ=255)                                                                                                   taaaaactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGGGGATGCTGTAGTGGCAGTAGCAAAACAGGGAAGACCTATCAATACCAGCACATTGCTTGATTACATTGACGGAAACATAAAGAAAAAATCATGGCTg                                                                                                                                                <  1:28449‑M1/102‑1 (MQ=255)                                                                                                    aaaaactggggataacgccttaaagggcgaagaaacggtctaaataggctgatgcaaggcagttacgggagaaaaaagcggctcaaacatgaagaaatgaaatgactgaggcagccgagaagaatttccccgcttattcgcaccttccCTAGGGGATGCTGTAGTGGAAGTAGCAAAAAAGGGAAGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTgg                                                                                                                                               >  2:246484‑M1/149‑251 (MQ=255)                                                                                                                        taaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGGGGATGCTGTAGTGGAAGTAGCAAAACAGGGAAGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTATTACa                                                                                                                            <  2:133705‑M1/122‑1 (MQ=255)                                                                                                                                    aaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgcaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGGGGCTGCTGTAGTGTAAGTAGCAAAACAGGGAAGACCTATCAATACCAGAACATTGCTTGATTACCTTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTATTACAAACAGCGATATc                                                                                                                <  1:131660‑M1/134‑1 (MQ=255)                                                                                                                                               ataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGGGGATGCTGTAGTGGAAGTAGCAAAACAGGGAAGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTTGATAACAAAGAATTATTACAAACAGCGATATCAGTGCTTAAAGa                                                                                                    >  2:288638‑M1/106‑251 (MQ=255)                                                                                                                                                           aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGGGGATGCTGTAGTGGAAGTAGCAAAACAGGGAAGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTATTACAAACAGCGATATCAGTTCTTAAAGACAAc                                                                                                >  1:261282‑M1/94‑243 (MQ=255)                                                                                                                                                           aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGGGGATGCTGTAGTGGAAGTAGCAAAACAGGGAAGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTATTACAAACAGCGATATCAGTTCTTAAAGACAAc                                                                                                <  2:261282‑M1/150‑1 (MQ=255)                                                                                                                                                                                  cggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGGGGATGCTGTAGTGGAAGTAGCAAAACAGGGAAGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTATTACAAACAGCGATATCAGTTCTTAAAGACAACCAAAATTTAAATGGTAAAATGtaatataat                                                                  <  1:74714‑M1/180‑1 (MQ=255)                                                                                                                                                                                              gaagaaatgaaatgactgagtcagccgagaagaatttccccgcttagtcgcaccttccCTAGGGGATGCTGGAGTGGAAGTAGCAAAACAGGGAAGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTATTACAAACAGCGATATCAGTTCTTAAAGACATCCAAAATTTAAATGGTAAAATGTAATATAATAAACTTACtttt                                                      >  2:14626‑M1/59‑250 (MQ=255)                                                                                                                                                                                              gaagaaatgaaatgacggagtcagccgagaagaatttccacgcttattcgcaccttccCTAGGGGATGCTGTAGTGGAAGTAGCAAAACAGGGAAGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGTAAACATAAAGAAAAAATCATGGATGGATAACAAAGAATTATTACAAACAGCGATATCAGTTCTTTAAGACATCCAAAATTTAAATGGTAAAATGTAATATAATAAACTTACttttt                                                     >  2:47742‑M1/59‑251 (MQ=255)                                                                                                                                                                                               aaaaaatgaaatgactgagtcagccgagaagaatttccccgctgattcgcaccttccCTAGGGGATGCTGTAGTGGAAGTAGCAAAACAGGGAAGACCTATCAATACCAGAACAGTGCTTGATTACAGTGAAGGAAACATAAAGAAAAAATCAGGGCTGGATAACAAAGAATTATTACAAACAGCGATATCAGTTCTTAAAGTCATCCAAAATGGAAATGGTAAAATGTAATATAATAAACTTACgttttt                                                    >  2:332692‑M1/58‑251 (MQ=255)                                                                                                                                                                                                          tgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAGGGGATGCTGTAGTGGAAGTAGCAAAACAGGGAAGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTATTACAAACAGCGATATCAGTTCTTAAAGACAACCAAAATTTAAATGGTAAAATGTAATATAATAAACTTACTTTTTTATCATTTTTcc                                         <  1:129666‑M1/205‑1 (MQ=255)                                                                                                                                                                                                                                                 accttccCTAGGGGATGCTGTAGTGGAAGTAGCAAAACAGGGAAGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTATTACAAACAGCGATATCAGTTCTTAAAGACAACCAAAATTTAAATGGTAAAATGTAATATAATAAACTTACTTTTTTATCATTTTTCCACTTTAACAACATTTTGCTCCACTTTTCCACGACCAaac  >  1:104103‑M1/8‑251 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                    GCTATATGAACAGCATACTGATAATCACATCTCTCCTTATCATATTCAGCATTTTTAGTCATGCCCTAATAAAATTAGGGATTGGCATATCCAATAACCCAGACAAAACCGATGTATAAGTCAACATATCCTGAATCAGACATACAATATCGCAATGAAAATCAATAATATTTTAAGGAATATCTTCATGAAATCAAAAGACACCCTAAAGTGGTTCCCTGCGCAGCTTCCTGAAGTAAGAATTATCCTAGGGGATGCTGTAGTGGAAGTAGCAAAACAGGGAAGACCTATCAATACCAGAACATTGCTTGATTACATTGAAGGAAACATAAAGAAAAAATCATGGCTGGATAACAAAGAATTATTACAAACAGCGATATCAGTTCTTAAAGACAACCAAAATTTAAATGGTAAAATGTAATATAATAAACTTACTTTTTTATCATTTTTCCACTTTAACAACATTTTGCTCCACTTTTCCACGACCAAAC  >  NC_000913/1632885‑1633375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.