| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 676,985 | Δ10,866 bp | IS5‑mediated | [ybeR]–gltI | [ybeR], djlB, ybeT, ybeU, djlC, hscC, rihA, gltL, gltK, gltJ, sroC, gltI |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 676985 | 688813–687847 | 10863–11829 | 31 [0] | [1] 2 | [ybeR]–[insH3] | [ybeR],djlB,ybeT,ybeU,djlC,hscC,rihA,gltL,gltK,gltJ,sroC,gltI,[insH3] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 676984 | 0 (0.000) | 29 (0.920) | 27/486 | 0.3 | 100% | coding (274/708 nt) | ybeR | DUF1266 domain‑containing protein YbeR |
| ? | NC_000913 | 687851 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
ATACGCAATGAATGCTGTTTACCTTCGCATTCATCACCCAAAATGTATTTAGGTACATGCTTTTTTGACCTTTCTTCCTCATGGGGAATTGATGACCGTGATGACCTGCTGCGCACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAATGAGCAAGGTCAGGCTTATGCGCAATTTGTCGCCAGCACCGCCGAATGCTGTGGCGAAGGGGGAATCAAAGCCTGGGATTATGTCCGGATGGGTTTTTTAAGCCGAATGGGCGTACTTAATAACTGGTTGAGCGAAGAAGAAAGTCTATGGATCCAGTCGCGCATTCATCTACGGGCTCTACGTTATTATAGTAACTGGCGGCAATACTTTGCCGGTTATACCTTTGGTCGGCAATATT > NC_000913/676762‑677224 | aTACGCAATGAATTCTGTTTACCTTCGCATTCATCACCCAAAATGTATTTAGGTACATGCTTTTTTGACCTTTCTTCCTCATGGGGAATTGATGACCGTGATGACCTGCTGCGCACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCAGCGCTGGTTGCGTTATTCGCCATGTGAATGGCTGGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattct < 2:329830‑M1/251‑29 (MQ=255) aCGCAATGAATGCTGTTTACCTTCGCATTCATCACCCAAAATGTATTTAGGTACATGCTTTTTTGACCTTTCTTCCTCATGGGGAATTGATGACCGTGATGACCTGCTGCGCACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattctt < 2:289933‑M1/250‑30 (MQ=255) cGCAATGAATGCTGTTTTCCTTCGCATTCATCACCCAAAATGTATTTAGGTACATGCTTTTTTGACCTTTCGTCCTCATGGGGAATTGATGACCGTGATGACCTGCTGCGCACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttct < 2:195746‑M1/251‑32 (MQ=255) aatgCTGTTTACCTTCGCATTCATCACCCAAAATGTATTTAGGTACATGCTTTTTTGACCTTTCTTCCTCATGGGGAATTGATGACCGTGATGACCTGCTGCGCACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttctcggctg > 1:92055‑M1/1‑213 (MQ=255) tcaCCCAAAATGTATTTAGGTACATGCTTTTTTGACCTTTCTTCCTCATGGGGAATTGATGACCGTGATGACCTGCTGCGCACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg > 1:296474‑M1/1‑190 (MQ=255) tATTTAGGTACATGCTTTTTTGACCTTGCTTCCTCATGGGGAATTGATGACCGTGCTGACCTGCTGCGCACAATTCACCGCATGCTCGATAACGGCCACACCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATATGAATGGCGTGACTATCTTGCTCAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcctgtttgagcagatt > 1:30794‑M1/1‑178 (MQ=255) tAGGTACATGCTTTTTTGACCTTTCTTCCTCATGGGGAATTGATGACCGTGATGACCTGCTGCGCACAATTCACCGACTGCTCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttttcggctgactcagtcatttcatttcttcatgtttgagccgatttttt > 2:166942‑M1/1‑174 (MQ=255) tGCTTTTTTGACCTTTCTTCCTCATGGGGAATTGATGACCGTGATGACCTGCTGCGCACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcat > 1:139616‑M1/1‑166 (MQ=255) tGCTTTTTTGACCTTTCTTCCTCATGGGGAATTGATGACCGTGATGACCTGCTGCGCACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcat < 2:139616‑M1/213‑48 (MQ=255) tttttGACCTTTCTTCCTCATGGGGAATTGATGACCGTGATGACCTGCTGCGCACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatg > 1:94035‑M1/1‑162 (MQ=255) ttcttcCTCATGGGGAATTGATGACCGTGATGACCTGCTGCGCACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccg > 2:245382‑M1/1‑152 (MQ=255) ttcttcCTCATGGGGAATTGATGACCGTGATGACCTGCTGCGCACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcattgcttcatgtttgagccg < 1:245382‑M1/222‑71 (MQ=255) ttcCTCATGGGGAATTGATGACCGTGATGACCTGCTGCGCACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcc > 1:236939‑M1/1‑149 (MQ=255) ccTCATGGGGAATTGATGACCGTGATGACCTGCTGCGCACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcct < 1:51179‑M1/250‑104 (MQ=255) cTCATGGGGAATTGATGACCGTGATGACCTGCTGCGCACAATTCACCGAATGATCGATAACGGTCATGCCTCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAgggaggtgcgaataagcggggagattcttctcggctgactcagtcatttaatttcttcatgtttgagccggttttttctcccgtaaatgccttgaatcagcctat > 1:120092‑M1/1‑146 (MQ=255) cATGGGGAATTGATGACCGTGATGACCTGCTGCGCACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTaa > 2:77931/1‑144 (MQ=255) cATGGGGAATTGATGACCGTGATGACCTGCTGCGCACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTaa < 1:77931/144‑1 (MQ=255) gatgaCCGTGATGACCTGCTGCGCACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttct < 1:73609‑M1/251‑119 (MQ=255) gatgaCCGTGATGACCTGCTGCGCACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttct > 2:36759‑M1/1‑133 (MQ=255) gcgcACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccttttcttcgccatttaaggcgtta < 2:51775‑M1/249‑137 (MQ=255) gcgcACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatc > 1:280624‑M1/1‑113 (MQ=255) gcgcACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCACGGTTTTATCACCGCTGGTATCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggggcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgattgagccgattttttctcccgtaaatgccttgaatcagcatatttagaccgtttcttcgccatttaagacgttatc > 1:293899‑M1/1‑113 (MQ=255) aTAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctc > 1:94415‑M1/1‑90 (MQ=255) ggTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatccgcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccact > 1:46912‑M1/1‑85 (MQ=255) cATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactga < 1:313137‑M1/250‑169 (MQ=255) gCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatc > 1:17486‑M1/1‑76 (MQ=255) ggCAGGGTTTTATCATCGCGGGTTTCGTTAGTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttctcgtctgactcagtcatttcatttcttcatttttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtaccattgggtcc < 2:236939‑M1/251‑184 (MQ=255) ggCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgatgtatcatttggtcc < 2:92055‑M1/251‑184 (MQ=255) cATGTGAATGGCGTGACTATCTTGCTGAACTAAggaaggtgcgaataagcggggaaattcttctcggctgactcaatcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtgaataacatcgc > 1:110042‑M1/1‑33 (MQ=255) tGCTGAACTCAggaaggtgcgaataagcggggaaattcttctcggctgactcagtaatttcctttcttcctgtttgcgccgcttttttctcccgtcaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgatatccccagtttttagtgagatctctcccactgacgtatcatttggtccgcccgaaacaggttggccagcgtgaataacatcgccagttggttatcgtttttcagc > 2:327632‑M1/1‑11 (MQ=255) gCTGAACTAAggaaggtgcgaataatctgggaaattcttctcggcttactcagttatttcatttcttcatgtttgagccgattttgtctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtttttagtgagatcgctcccactgacgtatcatttggtccgccctaaacaggttggccagcgtgaataacatcgccagttggttatcgtttttcagc < 1:36759‑M1/250‑241 (MQ=255) | ATACGCAATGAATGCTGTTTACCTTCGCATTCATCACCCAAAATGTATTTAGGTACATGCTTTTTTGACCTTTCTTCCTCATGGGGAATTGATGACCGTGATGACCTGCTGCGCACAATTCACCGAATGATCGATAACGGTCATGCCGCTCGGTTGGCAGGGTTTTATCACCGCTGGTTTCGTTATTCGCCATGTGAATGGCGTGACTATCTTGCTGAACTAAATGAGCAAGGTCAGGCTTATGCGCAATTTGTCGCCAGCACCGCCGAATGCTGTGGCGAAGGGGGAATCAAAGCCTGGGATTATGTCCGGATGGGTTTTTTAAGCCGAATGGGCGTACTTAATAACTGGTTGAGCGAAGAAGAAAGTCTATGGATCCAGTCGCGCATTCATCTACGGGCTCTACGTTATTATAGTAACTGGCGGCAATACTTTGCCGGTTATACCTTTGGTCGGCAATATT > NC_000913/676762‑677224 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |