New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1411924	0 (0.000)	20 (0.400)	20/436	0.9	100%	coding (25/936 nt)	ttcA	tRNA cytosine(32) 2‑sulfurtransferase TtcA
	?	NC_000913	1434985 =	0 (0.000)					intergenic (‑579/+200)	ynaM/uspF	protein YnaM/universal stress protein F

CACGTCGTATGCAAGAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTAC  >  NC_000913/1434738‑1435226                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                  cgggcagaacgtgttccgggaagcccggttgcttttgatcgaggttaacagccaccagcgaaaaattgattggcgcgctttgctgcaaattgcgcagaagctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgtgcaggttgtattgttctttcttACt                                                                                                                                                                                                                                                 <  2:476999‑M2/3‑1 (MQ=255) cgggcagaacgtgttccgggaagcccggtggcttttgatcgaggttaacagccacaagcgaaaaattgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttaaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttattACt                                                                                                                                                                                                                                                 >  1:251147‑M2/248‑250 (MQ=255)  gggcagaacgtgttccgggaagcccggttgcttttgatcgaggttaacagccaccagcgaaaaattgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaacccatgatgcgatcgccttcttcaatcatattgaagtcatcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTaa                                                                                                                                                                                                                                               <  1:256419‑M2/5‑1 (MQ=255)      agaacgtgttccaggaagaccggttacttttgctcgcggttaacagccaccagagaaacattgattggcgcgctttgctgcaaattgcgcagactctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatagccttcttcaatcatattgaagtcagcaatggcttagcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTc                                                                                                                                                                                                                                           >  2:251992‑M2/243‑251 (MQ=255)           gtgttccgggaagcccggttgcttttgatcgaggttaacagccaccagcgaaaaattgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGAt                                                                                                                                                                                                                                      <  1:22452‑M2/14‑1 (MQ=255)             gttccgggaagcccggttgcttttgatcgaggttaacagccaccagcgaaaaattgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGAttt                                                                                                                                                                                                                                    <  1:429261‑M2/16‑1 (MQ=255)                            gttgcttttgatcgaggttaacagcctccagcgaaaaattgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtcgtttcccccggagaggcaaaccatgatgcgatcgccttcgtcaatcatagtgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaagttgttcaggttgtattgttctttctgACTAATGTCCGGATTTTGCGACAGTTaaa                                                                                                                                                                                                                       <  2:237357‑M2/29‑1 (MQ=255)                                cttttgatcgaggttaacagccaccagcgaaaaattgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGCCATTTAAAAGCGAc                                                                                                                                                                                                                 >  2:174782‑M2/217‑251 (MQ=255)                                     gatcgaggttaacagccaccagcgaaaaattgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCaa                                                                                                                                                                                                             <  2:177276‑M2/39‑1 (MQ=255)                                         gaggttaacagccaccatcgaaaaattgattggcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgaaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGt                                                                                                                                                                                                        <  2:17129‑M2/44‑1 (MQ=255)                                                  agccacgagcgaaaaattggttggagcgctttgctgcaaattgcgcagaatctcgaacatggtatagctgtctttaaccacggagaggcaaaccatgatgcggtagccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCCATTCGTTATATGGc                                                                                                                                                                                                >  2:482740‑M2/199‑250 (MQ=255)                                                                         gcgcgctttgctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCg                                                                                                                                                                        <  2:148412‑M2/76‑1 (MQ=255)                                                                             cctttgctgcaaagtgcgcagaatctccagcatggtatagctgtcgttacccccggagaggcaacccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgtgcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGTCATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAAc                                                                                                                                                                    <  2:487212‑M2/80‑1 (MQ=255)                                                                                   ctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGAc                                                                                                                                                                                                                              <  1:544559‑M2/22‑1 (MQ=255)                                                                                   ctgcaaattgcgcagaatctccagcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGAc                                                                                                                                                                                                                              >  2:544559‑M2/166‑187 (MQ=255)                                                                                                   atctccagcatggtatagctgtctttacccccggagaggcaaaccaagatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgccgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGATATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCACAGCATAAGAAATCTGat                                                                                                                                               >  1:26168‑M2/150‑250 (MQ=255)                                                                                                         agcatggtatagctgtctttacccccggagaggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATaaaa                                                                                                                                         >  2:250481‑M2/144‑250 (MQ=255)                                                                                                                                        ggcaaaccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAgggg                                                                                                         <  2:336916‑M2/139‑1 (MQ=255)                                                                                                                                              ccatgatgcgatcgccttcttcaatcatattgaagtcagcaatggcttcgcacacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATg                                                                                                   >  2:281632‑M2/107‑251 (MQ=255)                                                                                                                                                           gccgtcttcaatcatattgaagtcagcaatggcttcgcccacgttacgacgcagacgtttttgtaatttgttcaggttgtattgttctttcttACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGc                                                                                      <  2:136939‑M2/158‑1 (MQ=255)                                                                                                                                                                                                                                    aGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAAACCGCAGCAATTTGCGGGCGTTAGTGTCAGCGCACAACCAGCCCGGAGCACTCTggg             >  2:7415/1‑249 (MQ=255)                                                                                                                                                                                                                                     ggTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGGGTCAGCGCACAACCAGCACGGAGCACTCTGCGt            >  1:241454/1‑251 (MQ=255)                                                                                                                                                                                                                                         gTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGc                                                   >  2:46332/1‑208 (MQ=255)                                                                                                                                                                                                                                         gTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGc                                                   <  1:46332/208‑1 (MQ=255)                                                                                                                                                                                                                                                tctttcttACTAATTTCTTGATTTTGCTACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGGGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTAc  <  2:488697/250‑1 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                  CACGTCGTATGCAAGAACGTGCTGCGGTTGGTTTGACTTTGATTGAGACGTTTTGGAATTTTTTTCGGTGGCAAAAATGGGGCAAAACGCTGCAAAAGGGGCAAAAAAGGGGCAAAAAAAGAGTGGATTATCGTAGCTTATTGTTGTCGCTGATGATATTTAACACATTGAAAAATAAGTAAAATACTTATGAGTCAGAGAGTTGTGATTTTTGCCCTTACTTGTTCAGGTTGTATTGTTCTTTCTTACTAATTTCTTGATTTTGCGACATTTAAAAGCGACTCAATTCGTTATATGGCATCAGAAGAGTATGCGTCATGCCGGAACGCCCAGCATAAGAAATCTGATATAAAAAACTGTGGCGTGTATGGTACGGATTAGAGGGGAAAATGTCAGCACATTTGCGAAATGAATCAAAAAGCCCGCAGCAATGTGCGGGCGTTAGTGTCAGCGCACAACCAGCACGGAGCACTCTGCGTGACGCACTAC  >  NC_000913/1434738‑1435226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.