New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1411924	0 (0.000)	20 (0.400)	20/436	0.9	100%	coding (25/936 nt)	ttcA	tRNA cytosine(32) 2‑sulfurtransferase TtcA
	?	NC_000913	1434985 =	0 (0.000)					intergenic (‑579/+200)	ynaM/uspF	protein YnaM/universal stress protein F

CGGGCAGAACGTGTTCCGGGAAGCCCGGTTGCTTTTGATCGAGGTTAACAGCCACCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCT  >  NC_000913/1411678‑1412082                                                                                                                                                                                                                                                       |                                                                                                                                                               cGGGCAGAACGTGTTCCGGGAAGCCCGGTTGCTTTTGATCGAGGTTAACAGCCACCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAAGCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTGCAGGTTGTATTGTTCTTTCTTact                                                                                                                                                             <  2:476999‑M1/250‑4 (MQ=255) cGGGCAGAACGTGTTCCGGGAAGCCCGGTGGCTTTTGATCGAGGTTAACAGCCACAAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTAAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTATTact                                                                                                                                                             >  1:251147‑M1/1‑247 (MQ=255)  gggCAGAACGTGTTCCGGGAAGCCCGGTTGCTTTTGATCGAGGTTAACAGCCACCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAACCCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCATCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaa                                                                                                                                                           <  1:256419‑M1/251‑6 (MQ=255)      aGAACGTGTTCCAGGAAGACCGGTTACTTTTGCTCGCGGTTAACAGCCACCAGAGAAACATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGACTCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATAGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTAGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttc                                                                                                                                                       >  2:251992‑M1/1‑242 (MQ=255)           gtgtTCCGGGAAGCCCGGTTGCTTTTGATCGAGGTTAACAGCCACCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgat                                                                                                                                                  <  1:22452‑M1/251‑15 (MQ=255)             gtTCCGGGAAGCCCGGTTGCTTTTGATCGAGGTTAACAGCCACCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattt                                                                                                                                                <  1:429261‑M1/251‑17 (MQ=255)                            gTTGCTTTTGATCGAGGTTAACAGCCTCCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCGTTTCCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCGTCAATCATAGTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAAGTTGTTCAGGTTGTATTGTTCTTTCTGactaatgtccggattttgcgacagttaaa                                                                                                                                   <  2:237357‑M1/249‑30 (MQ=255)                                cTTTTGATCGAGGTTAACAGCCACCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgccatttaaaagcgac                                                                                                                             >  2:174782‑M1/1‑216 (MQ=255)                                     gATCGAGGTTAACAGCCACCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaa                                                                                                                         <  2:177276‑M1/250‑40 (MQ=255)                                         gAGGTTAACAGCCACCATCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGAAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgt                                                                                                                    <  2:17129‑M1/251‑45 (MQ=255)                                                  aGCCACGAGCGAAAAATTGGTTGGAGCGCTTTGCTGCAAATTGCGCAGAATCTCGAACATGGTATAGCTGTCTTTAACCACGGAGAGGCAAACCATGATGCGGTAGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactccattcgttatatggc                                                                                                            >  2:482740‑M1/1‑198 (MQ=255)                                                                         gcgcgcTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccg                                                                                    <  2:148412‑M1/251‑77 (MQ=255)                                                                             cctTTGCTGCAAAGTGCGCAGAATCTCCAGCATGGTATAGCTGTCGTTACCCCCGGAGAGGCAACCCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTGCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgtcatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaac                                                                                <  2:487212‑M1/250‑81 (MQ=255)                                                                                   ctgcAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgac                                                                                                                                          <  1:544559‑M1/187‑23 (MQ=255)                                                                                   ctgcAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgac                                                                                                                                          >  2:544559‑M1/1‑165 (MQ=255)                                                                                                   aTCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCAAGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGCCGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgatatatggcatcagaagagtatgcgtcatgccggaacgcacagcataagaaatctgat                                                           >  1:26168‑M1/1‑149 (MQ=255)                                                                                                         aGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaa                                                     >  2:250481‑M1/1‑143 (MQ=255)                                                                                                                                        ggCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatggtacggattagagggg                     <  2:336916‑M1/251‑140 (MQ=255)                                                                                                                                              ccATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCACACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatggtacggattagaggggaaaatg               >  2:281632‑M1/1‑106 (MQ=255)                                                                                                                                                           gccgtcttcaatcATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTactaatttcttgattttgcgacatttaaaagcgactcaattcgttatatggcatcagaagagtatgcgtcatgccggaacgcccagcataagaaatctgatataaaaaactgtggcgtgtatggtacggattagaggggaaaatgtcagcacatttgc  <  2:136939‑M1/247‑159 (MQ=255)                                                                                                                                                                                                                                                       |                                                                                                                                                               CGGGCAGAACGTGTTCCGGGAAGCCCGGTTGCTTTTGATCGAGGTTAACAGCCACCAGCGAAAAATTGATTGGCGCGCTTTGCTGCAAATTGCGCAGAATCTCCAGCATGGTATAGCTGTCTTTACCCCCGGAGAGGCAAACCATGATGCGATCGCCTTCTTCAATCATATTGAAGTCAGCAATGGCTTCGCCCACGTTACGACGCAGACGTTTTTGTAATTTGTTCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCT  >  NC_000913/1411678‑1412082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.