New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1650702	0 (0.000)	29 (0.960)	28/488	0.2	100%	intergenic (+717/+2026)	ydfD/ynfP	lysis protein/protein YnfP
	?	NC_000913	1670814 =	0 (0.000)					coding (1116/1254 nt)	ynfM	putative transporter YnfM

AGCTCACCCAAAGCCGGAACCATGACCACCCGCTATGGGCGTGGTCCAGTGATGTTGTTTTCGACGGGGGTTATGCTGTTTGGTTTACTGATGACCTTATTCAGCTCGCTGTGGCTGATCTTTGCCGGAATGTTACTCTTCTCAGCAGGATTCTTCGCAGCCCACTCAGTAGCCAGCAGCTGGATCGGCCCCCGCGCAAAACGCGCTAAAGGCCAGGCCTCCTCGCTGTATCTGTTCAGTTACTATCTGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGTCGGCGCATTTATTGCTCTGATGCTGGTCATTGCTCTGCTGGTCGGGACGCGTTTGCATCGTCGTCTGCACGCCTGAAAAATAAGTCCGGACTGCGGTAAATACCCGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCA  >  NC_000913/1670566‑1671047                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                          catcaccgttgatatggttattagcgcacaggaattgttgcaggaagacatggcaacattcgacggacatatcgttgaagcgttgatgaaaatgccagaagttaacgccatgtatccggagcttaagttgcacgccattgggtgggttaagcataaatgtattcctggtgctaaatggcccgaaattcaggcagagatgcgcatctggaaaaaacgtcgcgaaggtgaacgcaaggaaaccggaaaatggg                                                                                                                                                                                                                                         >  1:221086‑M2/249‑251 (MQ=255)     accgttgatatgggtattagcgcacaggaattgttgcaggaagacatggcaacattcgacggacatatcgttgaagcgttgatgaaaatgccagaagttaacgccatgtatccggagcttaagttgcacgccattgggtgggttaagcataaatgtattcctggtgctaaatggcccgaaattcaggcagagatgcgcatctggaaaaaacgtcgcgaaggtgaacgcaaggaaaccggaaaatGGGGTCg                                                                                                                                                                                                                                     <  2:6697‑M2/7‑1 (MQ=255)                  ttattagcgcacaggaattgttgcaggaagacatggcaacattcgacggacatatcgttgaagcgttgatgaaaatgccagaagttaacgccatgtatccggagcttaagttgcacgccattgggtgggttaagcataaatgtattcctggtgctaaatggcccgaaattcaggcagagatgcgcatctggaaaaaacgtcgcgaaggtgaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCggg                                                                                                                                                                                                                         >  1:118735‑M2/232‑250 (MQ=255)                  ttattagcgcaaaggaattgttgcaggaagacatggcaacattcgacggaaatctcgttgaagcgttgatgcaaatgccagaagttaacgccatgtatccggagcttaagttgcacgccattgggtgggttaagcataaatgtattcctggtgctaaatggcccgaaattcaggcagagatgcgcatctggaaaaaacgtcgcgaaggagaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCggg                                                                                                                                                                                                                         >  2:203698‑M2/232‑250 (MQ=255)                   tattagcgcacagtaattgttgcaggaagcaatggcaccattcgaaggacatatcgttgaagcgttaatgaaaatgccagaagttaacgccatgtatccggagcttaagttgcaagccattgggtgggttaagcataaatgtattcctggtgctaaatggcccgaacttcaggcagagatgcgcatctggaaaaaacgtcgcgaaggggaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGAc                                                                                                                                                                                                                       >  2:295665‑M2/231‑251 (MQ=255)                       agcgcacaggaattgttgcaggaagacatggcaacattcgacggacatatcgttgaagcgttgatgaaaatgccagaagttaacgccatgtatccggagcttaagttgcacgccattgggtgggttaagcataaatgtattcctggtgctaaatggcccgaaattcaggcagagatgcgcatctggaaaaaacgtcgcgaaggtgaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTg                                                                                                                                                                                                                   <  1:90247‑M2/25‑1 (MQ=255)                                                        acattcgacggacatatcgttgaagcgttgatgaaaatgccagaagttaacgccatgtatccggagcttaagttgcacgccattgggtgggttaagcataaatgtattcctggtgctaaatggcccgaaattcaggcagagatgcgcatctggaaaaaacgtcgcgaaggtgaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAAc                                                                                                                                                                                  <  1:80097‑M2/58‑1 (MQ=255)                                                                                                 agaagttaacgccatgtatccggagcttaagttgcacgccattgggtgggttaagcataaatgtattcctggtgctaaatggcccgaaattcaggcagagatgcgcatctggaaaaaacgtcgcgaaggtgaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGTCGGCGCATTTATTGCTCTGATGCTGGTCATTGctct                                                                                                                                         <  1:13128‑M2/99‑1 (MQ=255)                                                                                                 agaagttaacgccatgtatccggagcttaagttgcacgccattgggtgggttaagcataaatgtattcctggtgctaaatggcccgaaattaaggcagagatgcgcatctggaaaaaacgtcgcgaaggagaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGTAGGCGCATTTATTGCTCTGATGCTGGTCATTGctct                                                                                                                                         >  1:105182‑M2/153‑251 (MQ=255)                                                                                                   aagttaacgccatgtatccggagcttaagttgcacgccattgggtgggttaagcataaatgtattcctggtgctaaatggcccgaaattcaggcagagatgcgcatctggaaaaaacgtcgcgaaggtgaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGTCGGCGCATTTATTGCTCTGATGCTGGTCATTGCTctgc                                                                                                                                       >  2:74416‑M2/151‑251 (MQ=255)                                                                                                     gttaacgccatgtatccggagcttaagttgcacgccattgggtgggttaagcataaatgtattcctggtgctaaatggcccgaaattcaggcagagatgcgcatctgaaaaaaacgtcgcgaaggtgaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTGGGTGGAGTTTTCTGGCATAACTATGGCTGGAACGGCGTCGGCGCATTTATTGCCCTGATGCTGGTCATTGCTctgctg                                                                                                                                     >  1:12768‑M2/149‑251 (MQ=255)                                                                                                                               gttgcacgccagtgggtgggttaagcataaatgtattcatggtgctaaatggcccgaaattcaggcagagatgcgcatctggaaaaaacgtcgcgaaggtgaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGTCGGCGCATTTATTGCTCTGATGCTGGTCATTGCTCTGCTGGTCGGGACGCGTTTGCATCGTCGTCt                                                                                                           <  1:48110‑M2/129‑1 (MQ=255)                                                                                                                                           tgggtgggttaagcataaatgtattcctggtgctaaatggcccgaaattcaggcagagatgcgcatctggaaaaaacgtcgcgaaggtgaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGTCGGCGCATTTATTGCTCTGATGCTGGTCATTGCTCTGCTGGTCGGGACGCGTTTGCATCGTCGTCTGCACGCCTGaa                                                                                                <  1:27779‑M2/140‑1 (MQ=255)                                                                                                                                            gggtgggttaagcataaatgtattcctggtgctaaatggcccgaaattcaggcagagatgcgcatctggaaaaaacgtcgcgaaggtgaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGTCGGCGCATTTATTGCTCTGATGCTGGTCATTGCTCTGCTGGTCGGGACGCGTTTGCATCGTCGTCTGCACGCCTGaaaa                                                                                              <  1:141296‑M2/142‑1 (MQ=255)                                                                                                                                                gggttaagcataaatgtatgcctggtgctaaagggcccgaaatgcaggcagagatgcgcatctggaaaaaacgtcgcgaaggtgaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGTCGGCGCATTTATTGCTCTGATGCTGGTCATTGCTCTGCTGGTCGGGACGCGTTTGCATCGTCGTCTGCACGCCTGAAAAATaa                                                                                          <  2:221086‑M2/146‑1 (MQ=255)                                                                                                                                                           aaatgtattcctggtgctaaatggcccgaaattcaggcagagatgcgcatctggaaaaaacgtcgcgaaggtgaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGTCGGCGCATTTATTGCTCTGATGCTGGTCAt                                                                                                                                               >  1:82159‑M2/95‑187 (MQ=255)                                                                                                                                                           aaatgtattcctggtgctaaatggcccgaaattcaggcagagatgcgcatctggaaaaaacgtcgcgaaggtgaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGTCGGCGCATTTATTGCTCTGATGCTGGTCAt                                                                                                                                               <  2:82159‑M2/93‑1 (MQ=255)                                                                                                                                                                 attcctggtgctaaatggcccgaaattcaggcagagatgcgcatctggaaaaaacgtcgcgaaggtgaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGTCGGCGCATTTATTGCTCTGATGCTGGTCATTGCTCTGCTGGTCGGGACGCGTTTGCATCGTCGTCTGCACGCCTGAAAAATAAGTCCGGACTGCGGTaa                                                                          <  1:165660‑M2/162‑1 (MQ=255)                                                                                                                                                                  ttcctggtgctaaatggcccgaaattcaggcagagatgcgcatctggaaaaaacgtcgcgaaggtgaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGTCGGCGCATTTCTTGCTCTGATGCTGGTCATTGCTCTGCTGGTCGGGACGCGTTTGCATCGTCGTCTGCACGCCTGAAAAATAAGTCCGGACTGCGGTAAAt                                                                        >  2:210569‑M2/88‑251 (MQ=255)                                                                                                                                                                       ggtgctaaatggcccgaaattcaggcagagatgcgcatctggaaaaaacgtcgcgaaggggaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGTCGGCGCATTTATTGCTCTGATGCTGGTCATTGCTCTGCTGGTCGGGACGCGTTTGCATCGTCGTCTGCACGCCTGAAAAATAAGTCCGGACTGCGGTAAATACCCg                                                                   <  1:203698‑M2/169‑1 (MQ=255)                                                                                                                                                                          gctaaatggcccgaaattcaggcagagatgcgcatctggaaaaaacgtcgcgaaggtgaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGTCGGCGCATTTATTGCTCTGATGCTGGTCATTGCTCTGCTGGTCGGGACGCGTTTGCATCGTCGTCTGCACGCCTGAAAAATAAGTCCGGACTGCGGTAAATACCCGTcc                                                                >  1:102640‑M2/80‑251 (MQ=255)                                                                                                                                                                                 ggcccgaaattcaggcagagatgctcatctggaaaaaacgtcgcgaaggtgaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGTCGGCGCATTTATTGCTCTGATGCTGGTCATTGCTCTGCTGGTCGGGACGCGTTTGCATCGTCGTCTGCACGCCTGAAAAATAAGTCCGGACTGCGGTAAATACCCGTCCGGACtt                                                          <  2:118735‑M2/178‑1 (MQ=255)                                                                                                                                                                                               gccgagatgcgcaactggaaaaaacgtcgcgaaggtgatctcaaggtaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTTGAACGGCGTCGGCGCATTTATTGCTCTGATGCTGGTCATTGCTCTGCTGTTCGGGACGCGTTTTCATCTTCGGCTGCACGCCTGAAAAATAAGTCCGGACTGCGGTAAATACCCGTCCGGACTTATTGCCAGCTCAAAc                                           <  2:278608‑M2/193‑1 (MQ=255)                                                                                                                                                                                                                 aaaaaacgtcgcgaaggtgaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGTCGGCGCATTTATTGCTCTGATGCTGGTCATTGCTCTGCTGGTCGGGACGCGTTTGCATCGTCGTCTGCACGCCTGAAAAATAAGTCCGGACTGCGGTAAATACCCGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATcc                         >  1:157396‑M2/41‑251 (MQ=255)                                                                                                                                                                                                                        gtcgcgaaggtgaacgcaaggaaaccggataatGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGTCGGCGCATTTATTGCTCTGATGCTGGTCATTGCTCTGCTGGTCGGGACGCGTTTGCATCGTCGTCTGCACg                                                                                                      >  1:284376‑M2/34‑167 (MQ=255)                                                                                                                                                                                                                        gtcgcgaaggtgaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGTCGGCGCATTTATTGCTCTGATGCTGGTCATTGCTCTGCTGGTCGGGACGCGTTTGCATCGTCGTCTGCACg                                                                                                      <  2:284376‑M2/134‑1 (MQ=255)                                                                                                                                                                                                                        gtcgcgaaggggaacgcaaggaaaccggaaaatGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGACGGCGCATTTATTGCTCTGATGCTGGTCATTGCTCTGCTGGTCGGGACGCGTTTGCATCGTCGTCTGCACGCCTGAAAAATAAGTCCGGACTGCGGTAAATACCCGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATa                  <  1:99923‑M2/218‑1 (MQ=255)                                                                                                                                                                                                                                   gaacgcaaggaaaccggaaaatGGGGTCGAGTATGGCCTGGACGCTGGGGGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGGCGGCGCATTGATTGCTCTGATGCTGGTCATTGCTCTGCTGGTCGGGACGCGTTTGCATCGTCGTCTGCACGCCTGAAAAATAAGTCCGGACTGCGGTAAATACCCGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCgcc       <  1:295665‑M2/229‑1 (MQ=255)                                                                                                                                                                                                                                         aaggaaaccggaacatGGGGTCGAGTATTGCCGGGACGCTGGGAGGTGTTTTATGGCATAACTATGGCTGGAACGGCGTGGGCGCATTTATTGCTCTGCTGCTGGTCATTGCTCTGCTGGACGGGACGCGTTTGCATCGTCGTCTGCACGCCTGAAAAATAAGTCCGGACTGCGGTAAATACCCGTCCGAACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGCAGAAGCgccatcca  >  2:214631‑M2/17‑250 (MQ=255)                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                          AGCTCACCCAAAGCCGGAACCATGACCACCCGCTATGGGCGTGGTCCAGTGATGTTGTTTTCGACGGGGGTTATGCTGTTTGGTTTACTGATGACCTTATTCAGCTCGCTGTGGCTGATCTTTGCCGGAATGTTACTCTTCTCAGCAGGATTCTTCGCAGCCCACTCAGTAGCCAGCAGCTGGATCGGCCCCCGCGCAAAACGCGCTAAAGGCCAGGCCTCCTCGCTGTATCTGTTCAGTTACTATCTGGGGTCGAGTATTGCCGGGACGCTGGGTGGTGTTTTCTGGCATAACTATGGCTGGAACGGCGTCGGCGCATTTATTGCTCTGATGCTGGTCATTGCTCTGCTGGTCGGGACGCGTTTGCATCGTCGTCTGCACGCCTGAAAAATAAGTCCGGACTGCGGTAAATACCCGTCCGGACTTATTGCCAGCTCAAACCAACGTTAATAGCCATCCTAAAATAGACGAAGCGCCAGCCA  >  NC_000913/1670566‑1671047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.