New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1650702	0 (0.000)	29 (0.960)	28/488	0.2	100%	intergenic (+717/+2026)	ydfD/ynfP	lysis protein/protein YnfP
	?	NC_000913	1670814 =	0 (0.000)					coding (1116/1254 nt)	ynfM	putative transporter YnfM

CATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGACATATCGTTGAAGCGTTGATGAAAATGCCAGAAGTTAACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATACACGTCTGTTGTTGATCTCGCCCGCGCCAGAGCCAATCAACAGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTT  >  NC_000913/1650455‑1650936                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                           cATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGACATATCGTTGAAGCGTTGATGAAAATGCCAGAAGTTAACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggg                                                                                                                                                                                                                                         >  1:221086‑M1/1‑248 (MQ=255)     aCCGTTGATATGGGTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGACATATCGTTGAAGCGTTGATGAAAATGCCAGAAGTTAACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcg                                                                                                                                                                                                                                     <  2:6697‑M1/251‑8 (MQ=255)                  ttattaGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGACATATCGTTGAAGCGTTGATGAAAATGCCAGAAGTTAACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccggg                                                                                                                                                                                                                         >  1:118735‑M1/1‑231 (MQ=255)                  ttattaGCGCAAAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGAAATCTCGTTGAAGCGTTGATGCAAATGCCAGAAGTTAACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGAGAACGCAAGGAAACCGGAAAATggggtcgagtattgccggg                                                                                                                                                                                                                         >  2:203698‑M1/1‑231 (MQ=255)                   tattaGCGCACAGTAATTGTTGCAGGAAGCAATGGCACCATTCGAAGGACATATCGTTGAAGCGTTAATGAAAATGCCAGAAGTTAACGCCATGTATCCGGAGCTTAAGTTGCAAGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAACTTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGGGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggac                                                                                                                                                                                                                       >  2:295665‑M1/1‑230 (MQ=255)                       aGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGACATATCGTTGAAGCGTTGATGAAAATGCCAGAAGTTAACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctg                                                                                                                                                                                                                   <  1:90247‑M1/251‑26 (MQ=255)                                                        aCATTCGACGGACATATCGTTGAAGCGTTGATGAAAATGCCAGAAGTTAACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaac                                                                                                                                                                                  <  1:80097‑M1/251‑59 (MQ=255)                                                                                                 aGAAGTTAACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctct                                                                                                                                         <  1:13128‑M1/251‑100 (MQ=255)                                                                                                 aGAAGTTAACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTAAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGAGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtaggcgcatttattgctctgatgctggtcattgctct                                                                                                                                         >  1:105182‑M1/1‑152 (MQ=255)                                                                                                   aaGTTAACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgc                                                                                                                                       >  2:74416‑M1/1‑150 (MQ=255)                                                                                                     gTTAACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGAAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggagttttctggcataactatggctggaacggcgtcggcgcatttattgccctgatgctggtcattgctctgctg                                                                                                                                     >  1:12768‑M1/1‑148 (MQ=255)                                                                                                                               gTTGCACGCCAGTGGGTGGGTTAAGCATAAATGTATTCATGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtct                                                                                                           <  1:48110‑M1/251‑130 (MQ=255)                                                                                                                                           tgggtgggTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaa                                                                                                <  1:27779‑M1/250‑141 (MQ=255)                                                                                                                                            gggtgggtTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaa                                                                                              <  1:141296‑M1/251‑143 (MQ=255)                                                                                                                                                gggtTAAGCATAAATGTATGCCTGGTGCTAAAGGGCCCGAAATGCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataa                                                                                          <  2:221086‑M1/251‑147 (MQ=255)                                                                                                                                                           aaaTGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcat                                                                                                                                               >  1:82159‑M1/1‑94 (MQ=255)                                                                                                                                                           aaaTGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcat                                                                                                                                               <  2:82159‑M1/187‑94 (MQ=255)                                                                                                                                                                 aTTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaa                                                                          <  1:165660‑M1/250‑163 (MQ=255)                                                                                                                                                                  ttCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttcttgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaat                                                                        >  2:210569‑M1/1‑87 (MQ=255)                                                                                                                                                                       ggTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGGGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaatacccg                                                                   <  1:203698‑M1/251‑170 (MQ=255)                                                                                                                                                                          gCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaatacccgtcc                                                                >  1:102640‑M1/1‑79 (MQ=255)                                                                                                                                                                                 ggCCCGAAATTCAGGCAGAGATGCTCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaatacccgtccggactt                                                          <  2:118735‑M1/250‑179 (MQ=255)                                                                                                                                                                                               gccgagatgcGCAACTGGAAAAAACGTCGCGAAGGTGATCTCAAGGTAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggcttgaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctgttcgggacgcgttttcatcttcggctgcacgcctgaaaaataagtccggactgcggtaaatacccgtccggacttattgccagctcaaac                                           <  2:278608‑M1/248‑194 (MQ=255)                                                                                                                                                                                                                 aaaaaaCGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaatacccgtccggacttattgccagctcaaaccaacgttaatagccatcc                         >  1:157396‑M1/1‑40 (MQ=255)                                                                                                                                                                                                                        gTCGCGAAGGTGAACGCAAGGAAACCGGATAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacg                                                                                                      >  1:284376‑M1/1‑33 (MQ=255)                                                                                                                                                                                                                        gTCGCGAAGGTGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgtcggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacg                                                                                                      <  2:284376‑M1/167‑135 (MQ=255)                                                                                                                                                                                                                        gTCGCGAAGGGGAACGCAAGGAAACCGGAAAATggggtcgagtattgccgggacgctgggtggtgttttctggcataactatggctggaacggcgacggcgcatttattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaatacccgtccggacttattgccagctcaaaccaacgttaatagccatcctaaaata                  <  1:99923‑M1/251‑219 (MQ=255)                                                                                                                                                                                                                                   gAACGCAAGGAAACCGGAAAATggggtcgagtatggcctggacgctggggggtgttttctggcataactatggctggaacggcggcggcgcattgattgctctgatgctggtcattgctctgctggtcgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaatacccgtccggacttattgccagctcaaaccaacgttaatagccatcctaaaatagacgaagcgcc       <  1:295665‑M1/251‑230 (MQ=255)                                                                                                                                                                                                                                         aaGGAAACCGGAACATggggtcgagtattgccgggacgctgggaggtgttttatggcataactatggctggaacggcgtgggcgcatttattgctctgctgctggtcattgctctgctggacgggacgcgtttgcatcgtcgtctgcacgcctgaaaaataagtccggactgcggtaaatacccgtccgaacttattgccagctcaaaccaacgttaatagccatcctaaaatagcagaagcgccatcca  >  2:214631‑M1/1‑16 (MQ=255)                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                           CATCACCGTTGATATGGTTATTAGCGCACAGGAATTGTTGCAGGAAGACATGGCAACATTCGACGGACATATCGTTGAAGCGTTGATGAAAATGCCAGAAGTTAACGCCATGTATCCGGAGCTTAAGTTGCACGCCATTGGGTGGGTTAAGCATAAATGTATTCCTGGTGCTAAATGGCCCGAAATTCAGGCAGAGATGCGCATCTGGAAAAAACGTCGCGAAGGTGAACGCAAGGAAACCGGAAAATACACGTCTGTTGTTGATCTCGCCCGCGCCAGAGCCAATCAACAGTACACTGAAAATTCAACAGGAAAAATCAGCCCGGTCATTGCTGCCATTCATCGCGAATACAAGCAGACATGGAAAACACTGGATGACGAACTGGCCTATGGGCGCTGCTTCGCAGACAGGCAGAACTTGATGGTATGCCTGCGATCAATGCCAAACGTGTTTACCGGATCATGCGCCAGAATGCGCTGTT  >  NC_000913/1650455‑1650936

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.