mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 200 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,634,724 | 0 | G | A | 63.6% | ‑5.2 / 17.7 | 23 | F54F (TTC→TTT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,699 | 0 | A | C | 63.0% | ‑4.5 / 24.1 | 27 | S63A (TCA→GCA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,661 | 0 | C | G | 60.6% | ‑4.6 / 39.2 | 33 | T75T (ACG→ACC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,676 | 0 | A | G | 60.0% | ‑6.1 / 32.5 | 30 | D70D (GAT→GAC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,658 | 0 | A | G | 58.8% | ‑6.0 / 36.5 | 34 | V76V (GTT→GTC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,769 | 0 | T | A | 58.8% | ‑1.8 / 20.3 | 17 | P39P (CCA→CCT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,778 | 0 | T | G | 58.8% | ‑1.7 / 18.6 | 17 | T36T (ACA→ACC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 579,651 | 0 | C | T | 57.7% | 5.1 / 26.5 | 26 | intergenic (‑57/‑229) | ybcV/ybcW | DUF1398 domain‑containing protein YbcV/uncharacterized protein YbcW |
| * | NC_000913 | 1,634,569 | 0 | A | T | 57.1% | ‑5.4 / 25.9 | 21 | F106Y (TTT→TAT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,571 | 0 | C | T | 57.1% | ‑3.3 / 22.9 | 21 | E105E (GAG→GAA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,578 | 0 | T | C | 57.1% | ‑3.3 / 16.6 | 21 | E103G (GAA→GGA) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 578,831 | 0 | T | C | 55.6% | 2.0 / 34.5 | 28 | T21T (ACA→ACG) | borD | prophage lipoprotein BorD |
| * | NC_000913 | 579,134 | 0 | T | C | 54.8% | 0.2 / 38.2 | 31 | intergenic (‑241/+50) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 580,020 | 0 | G | A | 54.5% | 3.4 / 24.2 | 23 | R47R (AGG→AGA) | ybcW | uncharacterized protein YbcW |
| * | NC_000913 | 580,437 | 0 | A | C | 54.5% | ‑5.1 / 26.7 | 22 | T3T (ACT→ACG) | ylcI | DUF3950 domain‑containing protein YlcI |
| * | NC_000913 | 580,302 | 0 | C | T | 53.5% | 3.7 / 55.2 | 44 | R48R (AGG→AGA) | ylcI | DUF3950 domain‑containing protein YlcI |
| * | NC_000913 | 1,634,799 | 0 | A | G | 53.3% | ‑0.8 / 17.4 | 15 | D29D (GAT→GAC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 579,146 | 0 | A | G | 53.1% | ‑4.6 / 42.9 | 32 | intergenic (‑253/+38) | borD/ybcV | prophage lipoprotein BorD/DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 111,195 | 0 | T | G | 52.9% | 4.3 / 11.1 | 17 | V51G (GTG→GGG) | mutT | 8‑oxo‑dGTP diphosphatase |
| * | NC_000913 | 580,830 | 0 | T | A | 52.4% | 2.7 / 27.4 | 21 | intergenic (‑385/‑4) | ylcI/nohD | DUF3950 domain‑containing protein YlcI/putative DNA‑packaging protein NohD |