| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 168354 | 0 (0.000) | 37 (1.530) | 37/470 | 0.0 | 100% | coding (871/2244 nt) | fhuA | ferrichrome outer membrane transporter/phage receptor |
| ? | NC_000913 | = 182568 | 0 (0.000) | coding (106/1158 nt) | cdaR | DNA‑binding transcriptional activator CdaR | |||||
CTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTTCATCATCCTTTAGGCATTTGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTATCGGCAGCGGCGATCGTGAGCGTATTGGTGAATTGCACGAAGGTGCATTGCTGGTACTTTCACAGGGACGAGTCGTCGATATCGATGACGCGGTAGCACGTCATCTGCACGGTGTGCGGCAGGGGATTAATCTACCGTTACGGCTGGAAGGTGAAATTGTCGGCGTAATTGGCCTGACAGGTGAACCAGAGAATCTGCGTAAATATGGCGAACTGGTCTGCATGACGGCTGAAATGATGCTGGAACAG > NC_000913/182322‑182816 | cTTCCTGCAACCGGGCAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTTCATCATCCTTTAGGCATTTGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGCGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTACTGGATGCCCGTGGGCGAATTATCgg > 2:94917/1‑251 (MQ=255) cTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTTCATCATCCTTTAGGCATTTGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTATCGGCAgc > 2:253526/1‑251 (MQ=255) aCGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTTCATCATCCTTTAGGCATTTGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctca > 1:215181‑M2/1‑237 (MQ=255) aaCTTCACCACAACTCCATACATCTTCATCATCCTTTAGGCATTTGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTGCCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcagccagccgta > 1:47002‑M2/1‑208 (MQ=255) ccaaCTCCATACATCTTCATCATCCTTTAGGCATTTGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggt > 2:218183‑M2/2‑199 (MQ=255) aTACATCTTCATCATCCTTTAGGCATTTGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggct < 1:79686‑M2/251‑61 (MQ=255) aCATCTTCATCATCCTTTAGGCATTTGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctc > 2:209869‑M2/1‑189 (MQ=255) aCATCTTCATAAACCTTTACGCATTTGCACAATGCAGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGCAATTATGGCTGGCTGGCATATTGATACCAAAATGGCGCAGGATATCGTGGCCCGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggccaaacggttccctctttcgacaaccagccgaaataaccggtttccggaccg < 2:168249‑M2/251‑63 (MQ=255) cATCTTCATCATCCTTTAGGCATTTGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgt > 2:58875‑M2/1‑188 (MQ=255) catcatCCTTTAGGCATTTGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctgg > 2:79686‑M2/1‑182 (MQ=255) gCATTTGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaa > 1:178879‑M2/1‑169 (MQ=255) aTTTGCCCAATGCCGTGCGTTACTTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTAGGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATAACGTGGCACGTACCAGGCGCATCATCGATACCAATATCAACGTAATGTATGCCCGTGGGCGAATTAtcggcagcggcttaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgtgctggaagtaagaaaggaagg > 1:177426‑M2/1‑167 (MQ=255) ttGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggcgcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggt > 1:104452‑M2/1‑165 (MQ=255) aaTGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggttgccggctcgttctggaagtaagaaaggaaggtaaaattg > 2:122583‑M2/1‑159 (MQ=255) cGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggtttt < 1:22484‑M2/251‑98 (MQ=255) acgttacgtACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCATGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttat > 1:152682‑M2/1‑151 (MQ=255) gttacgtACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggccgcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcat < 1:250700‑M2/251‑103 (MQ=255) tacgtACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatcc < 2:101095‑M2/251‑105 (MQ=255) aCTTCCTTATGCTAAGCTGTGCATAACGGGGGACTTATGGCTGGCTGGCATATTGATACCAAAATTGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGATTTAtcggcagcggctcaacggttccctccttcggcaaccagccgtaataaccggtttccttctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggac > 2:33175‑M2/1‑142 (MQ=255) cTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgc < 1:224428‑M2/251‑111 (MQ=255) tAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATCCCAAAATGGCGCAGGATATCGTAGCACGTACCATGCGCATCATCGATAACAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccttaataaccggtttccggcacgttctggcagtaagtaaggaagggaaaattggttttatcatccggacgccaggtacacgc < 2:61857‑M2/251‑122 (MQ=255) ccGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatcaggacgccaggtgcacgccggt < 2:48253‑M2/251‑126 (MQ=255) cGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgccggtg < 1:83446‑M2/251‑127 (MQ=255) cGGAGGACTTATGGCTGGCTGGCAGCTTGAGACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGAGACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggtgcccgctttcggcaaccagccgtaataaccggtttccggcgcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgccggtgcaatagcat > 2:228092‑M2/1‑116 (MQ=255) ggaCTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgccggtgcaatagcataacg < 1:193611‑M2/251‑140 (MQ=255) gaCTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCAGGCGCATCATCGATACCAATATCAACGGAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataacctgtttccggctcgttctggaagtaagaaaggaaggtaaaattgttgtgatcatccggacgccaggtgaacgccggtgcaatagcataacgc > 1:235323‑M2/1‑111 (MQ=255) ggctggctggcATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgccggtgcaatagcataacgctgctctt < 1:175683‑M2/251‑148 (MQ=255) tggcATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgccggtgcaatagcataacgctgctcttctgaccc < 2:154092‑M2/251‑155 (MQ=255) ggcATCTTGATACCAAAATGGCGCAGGATCTCGTGGCACGTACCATGCGCATCATAGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggcgcaacggttccctctttcggcaaccagccgtactaaccggtttccggctcgttctggaggtaagaaaggcaggtaaaattggttttatcatccggacgccaggtgaacgccggtgcaataccctaacgctgatattctgacccc < 2:143368‑M2/251‑156 (MQ=255) cAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgccggtgcaatagcatacctctgctcttttgaccctttctgctgggaat < 2:184345‑M2/251‑169 (MQ=255) aaaTGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgccgttgcaatagcataacgctgctcttctgaccctttctgctgggcattg > 1:94917‑M2/1‑81 (MQ=255) tatCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtacgaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgccggtgcaatagcataacgctgctcttctgaccctttctgctgggcattggcagaacgcgca < 1:148582‑M2/250‑183 (MQ=255) gcgcATCATCGATACCAATATCAACGTAATGTATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagacgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgccggtgcaatagcataacgctgctcttctgaccctttctgctgggcattggcagaacgcgcaagaccggtcaggcgataag > 2:498‑M2/1‑50 (MQ=255) aaCGTAATGGATGCCCGTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgccggtgcaatagcataacgctgctcttctgaccctttctgctgggcattggcagaacgcgcaagaccggtcaggcgataagagtaaacaccgtcatcatcca < 1:215470‑M2/250‑223 (MQ=255) gTGGGCGAATTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgccggtgcaatagcataacgctgctcttctgaccctttctgctgggcattggcagaacgcgcaagaccggtcaggcgataagagtaaacaccgtcatcatccaacgaatcgctaaagtca > 1:154092‑M2/1‑12 (MQ=255) ggCGAATTAtcggcagcgtctcaacggatccctctttcggccaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgccggtgcaatagcataacgctgctcttctgaccctttctgctgggcattggcagaacgcgcaagaccggtcaggcgataagagtaaacaccgtcatcatccaacgaatcgctaaagtcaaa < 1:75576‑M2/250‑242 (MQ=255) aaTTAtcggaagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgccggtgcaatagcataacgctgctcttctgaccctttctgctgggcattggcagaacgcgcaagaccggtcaggcgataagagtaaacaccgtcatcatccaacgaatcgctaaagtcaaaacc < 1:187223‑M2/249‑245 (MQ=255) aTTAtcggcagcggctcaacggttccctctttcggcaaccagccgtaataaccggtttccggctcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgccggtgcaatagcataacgctgctcttctgaccctttctgctgggcattggcagaacgcgcaagaccggtcaggtgataagagtaaacaccgtcatcatccaacgaatcgctaaagtcaaaaccagt > 1:205077‑M2/1‑4 (MQ=255) tAtcggcagcggcgcaacggttccctctttcggcaaccagccgtaataaccggtttccggcgcgttctggaagtaagaaaggaaggtaaaattggttttatcatccggacgccaggtgaacgccggtgcaatagcataacgctgctcttctgaccctgtctgctgggcatgggcagaacgcgcaagaccggtcaggcgataagagtaaacaccgtcatcatccaacgaatcgctaaagtcaaaaccagtc > 1:229935‑M2/1‑2 (MQ=255) | CTTCCTGAAAACGGGAAGGGGTTCTCCTTACAATCTGTGAACTTCACCACAACTCCATACATCTTCATCATCCTTTAGGCATTTGCACAATGCCGTACGTTACGTACTTCCTTATGCTAAGCCGTGCATAACGGAGGACTTATGGCTGGCTGGCATCTTGATACCAAAATGGCGCAGGATATCGTGGCACGTACCATGCGCATCATCGATACCAATATCAACGTAATGGATGCCCGTGGGCGAATTATCGGCAGCGGCGATCGTGAGCGTATTGGTGAATTGCACGAAGGTGCATTGCTGGTACTTTCACAGGGACGAGTCGTCGATATCGATGACGCGGTAGCACGTCATCTGCACGGTGTGCGGCAGGGGATTAATCTACCGTTACGGCTGGAAGGTGAAATTGTCGGCGTAATTGGCCTGACAGGTGAACCAGAGAATCTGCGTAAATATGGCGAACTGGTCTGCATGACGGCTGAAATGATGCTGGAACAG > NC_000913/182322‑182816 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |